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2015-02-13	Teemu Murtola	Make (most) HTML links to file formats work again	commit \| commitdiff \| tree
2015-02-13	Teemu Murtola	Convert file format descriptions to rst	commit \| commitdiff \| tree
2015-02-04	Mark Abraham	Implement user guide	commit \| commitdiff \| tree
2015-02-02	Mark Abraham	Merge branch release-5-0	commit \| commitdiff \| tree
2015-02-02	Mark Abraham	Avoid near-silent generation of zero energies	commit \| commitdiff \| tree
2015-01-23	John Baxter	Cleans up steepest descent initial potential hack	commit \| commitdiff \| tree
2015-01-23	Mark Abraham	Update FindCUDA work-around	commit \| commitdiff \| tree
2015-01-22	John Baxter	Changed "struct swap" to "struct t_swap"	commit \| commitdiff \| tree
2015-01-20	Mark Abraham	Removed gmx_header_config.h	commit \| commitdiff \| tree
2015-01-15	Mark Abraham	Merge branch release-5-0	commit \| commitdiff \| tree
2015-01-08	Mark Abraham	Handle ivec* correctly in DD error message	commit \| commitdiff \| tree
2015-01-05	Teemu Murtola	Support subset of rvec array as input for analysis...	commit \| commitdiff \| tree
2014-12-15	Mark Abraham	Merge branch 'release-5-0'	commit \| commitdiff \| tree
2014-12-15	Mark Abraham	Removing iteration + constraints framework	commit \| commitdiff \| tree
2014-12-15	Mark Abraham	Version bumps after new release	commit \| commitdiff \| tree
2014-12-15	Mark Abraham	Version 5.0.4	commit \| commitdiff \| tree
2014-12-15	Mark Abraham	Fix constraints checks in grompp	commit \| commitdiff \| tree
2014-12-11	Mark Abraham	Merge release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-12-09	Mark Abraham	Version bumps after new release	commit \| commitdiff \| tree
2014-12-09	Mark Abraham	Version 5.0.3	commit \| commitdiff \| tree
2014-12-05	Mark Abraham	Move threading support into listed-forces module	commit \| commitdiff \| tree
2014-11-27	Mark Abraham	Convert remaining callers of do_force to C++	commit \| commitdiff \| tree
2014-11-27	Mark Abraham	Merge branch release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-11-26	Roland Schulz	Merge release-5-0 into master	commit \| commitdiff \| tree
2014-11-24	Berk Hess	Avoid NaN in rlist buffer calculation	commit \| commitdiff \| tree
2014-11-17	Szilárd Páll	Allow increasing CUDA thread block size	commit \| commitdiff \| tree
2014-10-17	Mark Abraham	Extend gmock to turn off socket listener	commit \| commitdiff \| tree
2014-10-17	Mark Abraham	Move code to what will become the ewald module	commit \| commitdiff \| tree
2014-10-15	Mark Abraham	Converted many integrator-loop files to C++	commit \| commitdiff \| tree
2014-10-13	Mark Abraham	Merge release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-10-09	Mark Abraham	Fixed minor issue with NPT conserved energy	commit \| commitdiff \| tree
2014-10-09	Mark Abraham	Clean up cshake() and resolve old issues	commit \| commitdiff \| tree
2014-10-06	Mark Abraham	Fix trjconv -split not closing files	commit \| commitdiff \| tree
2014-10-03	Mark Abraham	Unite code for handling listed pairs	commit \| commitdiff \| tree
2014-10-01	Mark Abraham	Merge release-5-0 into master	commit \| commitdiff \| tree
2014-10-01	Mark Abraham	Version bumps after new release	commit \| commitdiff \| tree
2014-10-01	Mark Abraham	Version 5.0.2	commit \| commitdiff \| tree
2014-10-01	Carsten Kutzner	Allow gmx tune_pme to skip the check for command-line...	commit \| commitdiff \| tree
2014-09-23	Teemu Murtola	Reorganize CPack management	commit \| commitdiff \| tree
2014-09-18	Erik Lindahl	Add Power/PowerPC VMX SIMD support	commit \| commitdiff \| tree
2014-09-18	Mark Abraham	Merge branch release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-09-13	Mark Abraham	Teach git that some files are binary	commit \| commitdiff \| tree
2014-09-11	Mark Abraham	Remove documentation references to optimize-fft	commit \| commitdiff \| tree
2014-09-11	Mark Abraham	Convert domdec code to C++	commit \| commitdiff \| tree
2014-09-11	Teemu Murtola	Move _GNU_SOURCE to gmxpre.h	commit \| commitdiff \| tree
2014-09-11	Teemu Murtola	Sort includes outside src/gromacs	commit \| commitdiff \| tree
2014-09-11	Teemu Murtola	Sort all includes in src/gromacs	commit \| commitdiff \| tree
2014-09-11	Teemu Murtola	Use absolute include paths in nbnxn kernels	commit \| commitdiff \| tree
2014-09-11	Teemu Murtola	Manually sort some includes in src/gromacs	commit \| commitdiff \| tree
2014-09-08	Erik Lindahl	Add 64-bit AArch64 asimd SIMD support	commit \| commitdiff \| tree
2014-09-08	Erik Lindahl	Add 32-bit ARM Neon SIMD support	commit \| commitdiff \| tree
2014-09-05	Mark Abraham	Version bumps after new release	commit \| commitdiff \| tree
2014-09-05	Mark Abraham	Version 5.0.1	commit \| commitdiff \| tree
2014-09-04	Mark Abraham	Created bonded module	commit \| commitdiff \| tree
2014-09-01	Mark Abraham	Merge branch release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-08-29	Mark Abraham	Version bump after 4.6.7	commit \| commitdiff \| tree
2014-08-23	Teemu Murtola	Backport of 'Remove unused figures from share/html/'	commit \| commitdiff \| tree
2014-08-17	Mark Abraham	Remove mdrun -seppot	commit \| commitdiff \| tree
2014-07-07	Mark Abraham	Version bump after 4.6.6 release	commit \| commitdiff \| tree
2014-06-29	Mark Abraham	Version bump for 5.0	commit \| commitdiff \| tree
2014-06-29	Mark Abraham	Add forgotten licenses to COPYING	commit \| commitdiff \| tree
2014-06-28	Mark Abraham	Merge branch 'release-4-6' into release-5-0	commit \| commitdiff \| tree
2014-06-26	Roland Schulz	Merge release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-06-24	Berk Hess	Fixed the sign of mass perturbed contribution	commit \| commitdiff \| tree
2014-06-17	Erik Lindahl	Disabled replica exchange when T not in order	commit \| commitdiff \| tree
2014-06-05	Berk Hess	Fixed shift and switch modifiers, particularly for...	commit \| commitdiff \| tree
2014-06-02	Mark Abraham	Converted md.c to C++	commit \| commitdiff \| tree
2014-06-02	Erik Lindahl	Added grompp checks for zero atom masses in state B	commit \| commitdiff \| tree
2014-06-01	Erik Lindahl	Two quotes contributed by Vedran Miletic	commit \| commitdiff \| tree
2014-05-27	Roland Schulz	Merge release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-05-20	Mark Abraham	Fix copyright years for new code	commit \| commitdiff \| tree
2014-05-15	David van der Spoel	Added cmake profiling support	commit \| commitdiff \| tree
2014-05-13	Mark Abraham	Prohibit AVX_256 with buggy gcc 4.6.1	commit \| commitdiff \| tree
2014-04-29	Mark Abraham	Merge branch release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-04-10	Mark Abraham	Merge branch 'release-4-6' into release-5-0	commit \| commitdiff \| tree
2014-04-10	Teemu Murtola	Move part of types/simple.h to utility/	commit \| commitdiff \| tree
2014-04-07	Mark Abraham	Version bump for 5.0-rc1	commit \| commitdiff \| tree
2014-03-31	Teemu Murtola	Remove #include <...> for local files in gmx-view	commit \| commitdiff \| tree
2014-03-26	Mark Abraham	Fix use of inline in IMD	commit \| commitdiff \| tree
2014-03-23	Mark Abraham	Merge branch release-4-6	commit \| commitdiff \| tree
2014-03-18	Mark Abraham	Revert "Added new amber99sb-ildn-bsc0 force field."	commit \| commitdiff \| tree
2014-03-17	Mark Abraham	House-keeping for MTTK	commit \| commitdiff \| tree
2014-03-17	Mark Abraham	Merge branch release-4-6	commit \| commitdiff \| tree
2014-03-11	Rossen Apostolov	Removed .itp files from top level directory.	commit \| commitdiff \| tree
2014-03-06	Mark Abraham	Fix formatting in install guide	commit \| commitdiff \| tree
2014-03-06	Mark Abraham	Fix CMake syntax error	commit \| commitdiff \| tree
2014-03-03	Mark Abraham	Fix calling SIMD group kernels	commit \| commitdiff \| tree
2014-02-26	Roland Schulz	Use reduce in pme	commit \| commitdiff \| tree
2014-02-26	Erik Lindahl	Redesigned SIMD module and unit tests.	commit \| commitdiff \| tree
2014-02-24	Berk Hess	Implemented LJ-PME nbnxn kernels	commit \| commitdiff \| tree
2014-02-21	Szilard Pall	portability aspects in install guide + minor tweaks	commit \| commitdiff \| tree
2014-02-19	Berk Hess	Implemented nbnxn LJ switch functions	commit \| commitdiff \| tree
2014-02-18	Mark Abraham	Fix outstanding references to "CPU acceleration"	commit \| commitdiff \| tree
2014-02-18	Mark Abraham	Extend TestFileManager	commit \| commitdiff \| tree
2014-02-16	Mark Abraham	Fix test reference data accidentally broken	commit \| commitdiff \| tree
2014-02-11	Mark Abraham	Update stuff for old BlueGene	commit \| commitdiff \| tree
2014-02-09	Teemu Murtola	Make 'gmx -h' invariant wrt. provided options	commit \| commitdiff \| tree
2014-02-09	Teemu Murtola	Remove old help formatting code	commit \| commitdiff \| tree
2014-02-09	Teemu Murtola	Make FileNameOption behave more like old filenm parser	commit \| commitdiff \| tree
2014-02-09	Teemu Murtola	Implement synopsis for help output	commit \| commitdiff \| tree
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