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Merge branch 'release-4-5-patches'
[alexxy/gromacs.git]
/
src
/
2011-02-16
Carsten Kutzner
Merge branch 'release-4-5-patches'
tree
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commitdiff
2011-02-16
Carsten Kutzner
Merge branch 'release-4-5-patches' of git.gromacs.org...
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commitdiff
2011-02-16
Carsten Kutzner
Fixed int overflow happening in genion when number...
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commitdiff
2011-02-16
Teemu Murtola
Merge branch 'release-4-5-patches'
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commitdiff
2011-02-16
Teemu Murtola
Fixed a rare bug in selection position handling.
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commitdiff
2011-02-16
Teemu Murtola
Added selection unit tests for most keywords.
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commitdiff
2011-02-16
Justin Lemkul
Add -tu option to g_hbond.
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commitdiff
2011-02-16
Mark Abraham
Clarified source of g_rmsf reference frame
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commitdiff
2011-02-15
Justin Lemkul
Small fix to improve xpm2ps output
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commitdiff
2011-02-13
Mark Abraham
Added workaround for F_GB13 duplicates
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commitdiff
2011-02-13
Mark Abraham
Fixed erroneous floating-point comparison
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commitdiff
2011-02-12
Mark Abraham
Added note about doing repeat invocations of genbox
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commitdiff
2011-02-11
Mark Abraham
Removed ancient CVS tag lines
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commitdiff
2011-02-11
Mark Abraham
Used some spacing to make code readable
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commitdiff
2011-02-11
Mark Abraham
Used symbolic constant more consistently
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commitdiff
2011-02-11
Mark Abraham
Made the "multiple settles" fatal error more helpful
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commitdiff
2011-02-10
Sander Pronk
Fixed a bug in g_energy -odh
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commitdiff
2011-02-09
Teemu Murtola
Simpler memory semantics for analysis runner.
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commitdiff
2011-02-08
Teemu Murtola
Converted rest of selection unit tests.
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commitdiff
2011-02-07
Teemu Murtola
Added selection unit tests using new framework.
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commitdiff
2011-02-07
Teemu Murtola
Added test framework for reference runs.
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commitdiff
2011-02-07
Teemu Murtola
Added functions for path and dir manipulation.
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commitdiff
2011-02-04
Roland Schulz
using set_mm_ps to make pgi happy
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commitdiff
2011-02-03
Christoph Junghans
Merge branch 'release-4-5-patches'
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commitdiff
2011-02-03
Justin Lemkul
Fixed a typo.
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commitdiff
2011-02-02
Mark Abraham
Fixed minor issue with replica exchange
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commitdiff
2011-02-01
Roland Schulz
Merge remote branch 'origin/release-4-5-patches'
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commitdiff
2011-01-30
Erik Lindahl
Improved PBC handling for large molecules during cluste...
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commitdiff
2011-01-30
Erik Lindahl
Fixed the pbc cluster option of trjconv by switching...
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commitdiff
2011-01-29
David van der Spoel
Merge branch 'release-4-5-patches' of git@git.gromacs...
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commitdiff
2011-01-29
David van der Spoel
Added code in g_nmeig to compute the quantum correction...
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commitdiff
2011-01-28
Mark Abraham
Added forgotten file
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commitdiff
2011-01-28
Mark Abraham
Turned g_options into a normal GROMACS tool
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commitdiff
2011-01-28
Mark Abraham
Renamed src/tools/options.c
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commitdiff
2011-01-28
Mark Abraham
Improved grompp documentation
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commitdiff
2011-01-26
David van der Spoel
Merge branch 'release-4-5-patches' of git@git.gromacs...
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commitdiff
2011-01-25
Mark Abraham
Improved genion -h
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commitdiff
2011-01-25
Mark Abraham
Improved do_dssp -ssdump output
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commitdiff
2011-01-25
Mark Abraham
Improved do_dssp -sc output
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commitdiff
2011-01-24
Christoph Junghans
Merge branch 'release-4-5-patches'
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commitdiff
2011-01-24
Justin Lemkul
Various small changes to the man pages.
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commitdiff
2011-01-23
Justin Lemkul
Small fix for editconf related to formatting consistency.
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commitdiff
2011-01-23
Teemu Murtola
Removed most autoconf-related files.
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commitdiff
2011-01-23
Mark Abraham
Improved conversion of documentation to LaTeX
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commitdiff
2011-01-23
Mark Abraham
Improved consistency of text style usage
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commitdiff
2011-01-23
Mark Abraham
Minor wording fixes
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commitdiff
2011-01-23
Mark Abraham
Moved options.c to tools subdir
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commitdiff
2011-01-23
Mark Abraham
cmake: added back gsl support (GMX_GSL, disabled by...
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commitdiff
2011-01-22
Christoph Junghans
cmake: added back gsl support (GMX_GSL, disabled by...
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commitdiff
2011-01-22
David van der Spoel
Fixed bug 678 which was due to calling gmx_fatal withou...
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commitdiff
2011-01-22
David van der Spoel
Fixed bug 678 which was due to calling gmx_fatal withou...
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commitdiff
2011-01-21
Justin Lemkul
More minor formatting/editorial fixes for the manual.
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commitdiff
2011-01-20
Christoph Junghans
add g_options to runtime components
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commitdiff
2011-01-20
Christoph Junghans
fixed cmake build of ngmx
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commitdiff
2011-01-20
Christoph Junghans
added g_options, needed for the manual, to cmake build
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commitdiff
2011-01-20
Mark Abraham
Made gmxdump error message clearer.
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commitdiff
2011-01-19
Justin Lemkul
Fixes to g_wham documentation.
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commitdiff
2011-01-19
Justin Lemkul
Tons of tiny changes to documentation. Manual looks...
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commitdiff
2011-01-19
Teemu Murtola
Make default option values more flexible.
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commitdiff
2011-01-19
Justin Lemkul
Trivial fixes to program descriptions.
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commitdiff
2011-01-19
Christoph Junghans
fixed libgromacs pkg-config file
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commitdiff
2011-01-18
Mark Abraham
Improved .mdp file comment about the 'define' field
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commitdiff
2011-01-17
Justin Lemkul
Removed non-existent program and redundant information...
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commitdiff
2011-01-17
Teemu Murtola
Added common unit testing utilities.
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commitdiff
2011-01-17
Berk Hess
fixed incorrect parameter declarations in gmx_fft_fftw2.c
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commitdiff
2011-01-14
Teemu Murtola
Improved Doxygen docs for trajectoryanalysis/.
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commitdiff
2011-01-14
Justin Lemkul
Fixes to grompp -maxwarn documentation. Issue ID #627
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commitdiff
2011-01-13
Carsten Kutzner
Enforced rotation: added fit type 'potential'
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commitdiff
2011-01-13
Mark Abraham
Made src/kernel/repl_ex.c legible
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commitdiff
2011-01-10
Teemu Murtola
Added a C++ template for analysis tools.
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commitdiff
2011-01-10
Berk Hess
fixed zero viscosity energy/log file output with cos_ac...
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commitdiff
2011-01-09
Teemu Murtola
Moved protonate and tpbconv to src/programs/.
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commitdiff
2011-01-09
Teemu Murtola
Removed libgmxpreprocess from CMake.
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commitdiff
2011-01-09
Teemu Murtola
Moved x2top, gmxcheck and gmxdump to src/programs/.
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commitdiff
2011-01-09
Teemu Murtola
Moved pdb2gmx from src/kernel/ to src/programs/pdb2gmx/.
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commitdiff
2011-01-09
Teemu Murtola
Moved grompp from src/kernel/ to src/programs/grompp/.
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commitdiff
2011-01-09
Teemu Murtola
Moved mdrun from src/kernel/ to src/programs/mdrun/.
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commitdiff
2011-01-07
Mark Abraham
Added note that g_msd -mol does treat PBC (by making...
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commitdiff
2011-01-04
Carsten Kutzner
Merge branch 'release-4-5-patches'
tree
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commitdiff
2011-01-04
ckutzne
Fixed inconvenient output file names if -sep is used...
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commitdiff
2011-01-04
Berk Hess
fixed grompp looking for include files in double relati...
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commitdiff
2011-01-03
Teemu Murtola
Merge branch 'cpp-migration'
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commitdiff
2011-01-03
Teemu Murtola
Added g_select for the new framework.
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commitdiff
2010-12-26
David van der Spoel
Merge branch 'release-4-5-patches' of git@git.gromacs...
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commitdiff
2010-12-26
Teemu Murtola
Removed an obsolete file.
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commitdiff
2010-12-26
Teemu Murtola
Fixed issues with header installation.
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commitdiff
2010-12-26
Teemu Murtola
Merge branch 'cpp-analysis'
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commitdiff
2010-12-26
Teemu Murtola
Merge commit '0e52c9073c31ddc1cdc23f0cbf867ad1c9e72524...
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commitdiff
2010-12-26
Teemu Murtola
Moved selection and trajana modules to src/gromacs/.
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commitdiff
2010-12-26
Teemu Murtola
Merge commit '4d39dbdaa88b63df182fb3ca1d9133f2809277c1...
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commitdiff
2010-12-26
Teemu Murtola
Merge branch 'release-4-5-patches'
tree
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commitdiff
2010-12-26
Teemu Murtola
Deleted leftover files from the migration.
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commitdiff
2010-12-26
Teemu Murtola
Removed autoconf files from moved directories.
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commitdiff
2010-12-25
David van der Spoel
Added warning in g_dipoles
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commitdiff
2010-12-23
David van der Spoel
Merge branch 'release-4-5-patches'
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commitdiff
2010-12-23
David van der Spoel
Fixed bug in statistics which did not allow fitting...
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commitdiff
2010-12-22
Berk Hess
removed incorrect citation print of Engin2010 for pull...
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commitdiff
2010-12-21
Berk Hess
pme.c work-around for MPI fatal error in pme with partt...
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commitdiff
2010-12-16
Berk Hess
fixed incorrect LJ table in mdrun with reppow!=12
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commitdiff
2010-12-16
Berk Hess
removed editconf warning on box distance with -bt
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