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Merge "Improve ProgramInfo and use it everywhere."
[alexxy/gromacs.git]
/
src
/
2012-07-05
David van der Spoel
Merge "Improve ProgramInfo and use it everywhere."
tree
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commitdiff
2012-07-05
Christoph Junghans
Merge "Fix most doxygen warnings."
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commitdiff
2012-07-04
Roland Schulz
Remove unused FFT functions
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commitdiff
2012-07-04
Teemu Murtola
Fix most doxygen warnings.
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commitdiff
2012-07-04
Roland Schulz
Fixes for FFT libraries
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commitdiff
2012-07-03
Teemu Murtola
Improve ProgramInfo and use it everywhere.
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commitdiff
2012-07-03
Teemu Murtola
Error/exception handling improvements.
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commitdiff
2012-07-03
Teemu Murtola
Always build thread_mpi threading into libgromacs.
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commitdiff
2012-06-28
Teemu Murtola
Remove more underscore-prefixed C++ symbols.
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commitdiff
2012-06-26
Roland Schulz
Merge "Make sure that found Boost version is new enough"
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commitdiff
2012-06-26
Teemu Murtola
Merge "Merge remote-tracking branch 'origin/release...
tree
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commitdiff
2012-06-26
Christoph Junghans
Merge "Merge remote-tracking branch 'gerrit/release...
tree
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commitdiff
2012-06-24
Roland Schulz
Merge remote-tracking branch 'origin/release-4-6'
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commitdiff
2012-06-24
Michael Shirts
Merge "Fix mdp_opt formatting of expanded ensemble...
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commitdiff
2012-06-24
Teemu Murtola
Merge remote-tracking branch 'gerrit/release-4-6'
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commitdiff
2012-06-23
Roland Schulz
Fix illegal usage of MPI_Comm_create
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commitdiff
2012-06-22
Christoph Junghans
Merge "Simple patch for openmm_wrapper.cpp" into releas...
tree
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commitdiff
2012-06-22
Teemu Murtola
Increase coverate of selection unit tests.
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commitdiff
2012-06-21
Erik Lindahl
Fixed gcc inline assembly issue with PIC and older...
tree
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commitdiff
2012-06-20
Teemu Murtola
Make the selection parser exception-proof.
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commitdiff
2012-06-20
Teemu Murtola
Use push parser for selection parsing.
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commitdiff
2012-06-20
Teemu Murtola
Add string utility functions for suffix handling.
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commitdiff
2012-06-20
Teemu Murtola
Rename format.h to more generic stringutil.h.
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commitdiff
2012-06-20
Teemu Murtola
Clean up option and selection flags.
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commitdiff
2012-06-20
Teemu Murtola
Remove (part of) underscore-prefixed C++ symbols.
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commitdiff
2012-06-18
Martin Hoefling
gmx_dyecoupl: check selected groups from user
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commitdiff
2012-06-16
Erik Lindahl
New CPU detection & AVX/SSE code, removed raw assembly...
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commitdiff
2012-06-15
John Eblen
Remove unnecessary "move" on shared pointer
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commitdiff
2012-06-15
Justin Lemkul
Simple patch for openmm_wrapper.cpp
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commitdiff
2012-06-15
Christoph Junghans
Merge "Remove unnecessary *-impl.h files."
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commitdiff
2012-06-13
Teemu Murtola
Updates to selection online help.
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commitdiff
2012-06-13
Teemu Murtola
Remove unnecessary *-impl.h files.
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commitdiff
2012-06-13
Christoph Junghans
Merge "Merge branch 'release-4-6'"
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commitdiff
2012-06-06
Roland Schulz
Renamed TestTemporaryFileManager to TestFileManager
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commitdiff
2012-06-06
Roland Schulz
Testutils improvements for arrays and parameterized...
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commitdiff
2012-06-06
Roland Schulz
Merge branch 'release-4-6'
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commitdiff
2012-06-04
Michael Shirts
Merging in free energy, exp. ensemble, & andersen t...
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commitdiff
2012-06-03
Roland Schulz
Merge release-4-6 into master
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commitdiff
2012-06-02
Sander Pronk
thread_mpi C++11 compatible mutex classes
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commitdiff
2012-06-01
Roland Schulz
Merge release-4-5-patches into release-4-6
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commitdiff
2012-06-01
Christoph Junghans
Merge "Use External BLAS/LAPACK by default" into releas...
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commitdiff
2012-06-01
Christoph Junghans
Merge "Replace our fftpack version with Numpy's version...
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commitdiff
2012-06-01
Roland Schulz
Replace our fftpack version with Numpy's version
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commitdiff
2012-06-01
Teemu Murtola
More config.h cleanup.
tree
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commitdiff
2012-05-30
Teemu Murtola
Make get_libdir() robust when run from build tree.
tree
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commitdiff
2012-05-30
Teemu Murtola
Fix use after free in g_anaeig projection code.
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commitdiff
2012-05-30
Teemu Murtola
Fixed some memory leaks.
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commitdiff
2012-05-29
Sander Pronk
Removed dependency on windows.h through commrec.h,...
tree
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commitdiff
2012-05-29
Christoph Junghans
Merge "Revised g_tune_pme" into release-4-6
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commitdiff
2012-05-29
Teemu Murtola
Improve 'g_ana help'.
tree
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commitdiff
2012-05-29
Teemu Murtola
Generic handling of online help topics.
tree
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commitdiff
2012-05-29
Teemu Murtola
Additional features to TextTableFormatter.
tree
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commitdiff
2012-05-29
Teemu Murtola
Separated string formatting used only for help.
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commitdiff
2012-05-29
Teemu Murtola
Reorganize linear algebra code.
tree
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commitdiff
2012-05-28
Christoph Junghans
Merge "Continuing to fix threading on Cygwin" into...
tree
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commitdiff
2012-05-28
Christoph Junghans
Merge "Improve gmx::test::CommandLine."
tree
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commitdiff
2012-05-28
Christoph Junghans
Merge "Improve analysisdata reference checks."
tree
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commitdiff
2012-05-28
Christoph Junghans
Merge "Move common test code to testutils."
tree
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commitdiff
2012-05-28
Christoph Junghans
Merge "Simplify selection parsing methods signature."
tree
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commitdiff
2012-05-28
Christoph Junghans
Merge "Option parsing through SelectionOptionManager."
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commitdiff
2012-05-28
Christoph Junghans
Merge "Simpler required selection input from a file."
tree
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commitdiff
2012-05-28
Christoph Junghans
Merge "Split option code away from SelectionCollection."
tree
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commitdiff
2012-05-28
Christoph Junghans
Merge "Merge release-4-6 (commit 'Ic142a690')"
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commitdiff
2012-05-28
Christoph Junghans
Merge "Fixed 'g_ana select' broken by I8806b3e0."
tree
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commitdiff
2012-05-27
Roland Schulz
Fix editconf real-bool misusage
tree
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commitdiff
2012-05-27
Roland Schulz
Merge release-4-6 (commit 'Ic142a690')
tree
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commitdiff
2012-05-27
David van der Spoel
Merge "added explicit sqrtf to the float version of...
tree
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commitdiff
2012-05-27
Roland Schulz
Fix Clang 3.1 warning
tree
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commitdiff
2012-05-26
Mark Abraham
Continuing to fix threading on Cygwin
tree
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commitdiff
2012-05-25
Roland Schulz
Make load_vmd_library static
tree
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commitdiff
2012-05-25
Roland Schulz
Made all vmdio headers private
tree
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commitdiff
2012-05-25
Roland Schulz
Merge "fixed [dd] and [TT] typos in documentation of...
tree
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commitdiff
2012-05-25
David van der Spoel
Merge "grompp now retains the order of bonds converted...
tree
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commitdiff
2012-05-25
Martin Hoefling
fixed [dd] and [TT] typos in documentation of mdrun...
tree
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commitdiff
2012-05-25
Szilárd Páll
Merge "Fix Clang 3.1 compile error"
tree
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commitdiff
2012-05-25
Christoph Junghans
Merge "Fix that sigaction mask wasn't zeroed" into...
tree
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commitdiff
2012-05-25
Roland Schulz
Fix Clang 3.1 compile error
tree
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commitdiff
2012-05-24
Berk Hess
now mdrun always initializes MPI
tree
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commitdiff
2012-05-24
Teemu Murtola
Merge "Code cleanup to avoid name collisions" into...
tree
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commitdiff
2012-05-24
Teemu Murtola
Improve gmx::test::CommandLine.
tree
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commitdiff
2012-05-24
Teemu Murtola
Improve analysisdata reference checks.
tree
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commitdiff
2012-05-24
Teemu Murtola
Move common test code to testutils.
tree
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commitdiff
2012-05-23
Carsten Kutzner
Revised g_tune_pme
tree
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commitdiff
2012-05-23
Roland Schulz
Fix that sigaction mask wasn't zeroed
tree
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commitdiff
2012-05-23
Roland Schulz
Code cleanup to avoid name collisions
tree
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commitdiff
2012-05-22
Teemu Murtola
Fixed 'g_ana select' broken by I8806b3e0.
tree
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commitdiff
2012-05-21
Berk Hess
grompp now retains the order of bonds converted to...
tree
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commitdiff
2012-05-21
Berk Hess
re-introduced fix for real/double issue in gmx_density
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commitdiff
2012-05-20
Teemu Murtola
Remove unused defines from config.h, part 3.
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commitdiff
2012-05-20
Teemu Murtola
Remove unused defines from config.h, part 2.
tree
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commitdiff
2012-05-20
Teemu Murtola
Remove unused defines from config.h, part 1.
tree
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commitdiff
2012-05-19
Teemu Murtola
Simplify selection parsing methods signature.
tree
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commitdiff
2012-05-19
Teemu Murtola
Option parsing through SelectionOptionManager.
tree
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commitdiff
2012-05-18
Teemu Murtola
Simpler required selection input from a file.
tree
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commitdiff
2012-05-18
Teemu Murtola
Split option code away from SelectionCollection.
tree
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commitdiff
2012-05-18
Roland Schulz
Merge remote-tracking branch 'origin/release-4-6'
tree
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commitdiff
2012-05-18
Roland Schulz
Rename BOOL to EBOOL
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commitdiff
2012-05-17
Teemu Murtola
Merge "Fixing more clang warnings" into release-4-6
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commitdiff
2012-05-17
Maarten Wolf
mv membed.h from include to src/kernel
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commitdiff
2012-05-17
Teemu Murtola
Utility class for temporary unit testing files.
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commitdiff
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