Workaround for ICC 19u5 and 20initial
[alexxy/gromacs.git] / src /
2020-01-07 Roland SchulzWorkaround for ICC 19u5 and 20initial
2019-12-23 Paul BauerRevert "Fix that tests intended for multiple ranks...
2019-12-20 Christian BlauRemove problematic output of gmx angle
2019-12-17 Paul BauerFix formatting error
2019-12-17 Mark AbrahamFix that tests intended for multiple ranks run that way
2019-12-16 Szilárd PállFix the GPU bonded stream with 1 PP + 1 PME rank
2019-12-16 Paul BauerFix torsion angle calculation
2019-12-13 Paul BauerCheck for using correct hwloc headers and runtime
2019-12-10 Mark AbrahamSimplify gmxapi RPATH handling
2019-12-06 Christian BlauChange arbitrary units to counts in RMSD distance distr...
2019-11-28 Berk HessRemove assertion failure in AWH without initial stage
2019-11-26 Berk HessFix issues with AWH with periodic pulling
2019-11-25 Christian BlauFix duplicate CONNECT records in pdb files
2019-11-18 Berk HessFix intermolecular interactions with DD
2019-11-07 Berk HessFix .gro large box writing
2019-10-23 Berk HessFix illegal memory access in FE calculations
2019-10-09 Berk HessIncrease spc minimization test tolerance
2019-10-09 Berk HessFix harmless OpenMP write race
2019-10-09 Berk HessFix GPU atom data init timer issue
2019-10-09 Berk HessFix random energy and virial with PME on GPU on a PME...
2019-10-01 Paul BauerFix chain ID handling in make_ndx
2019-10-01 Berk HessAlways output correct kinetic at last step
2019-09-30 Berk HessActually fix gmx wham with angle geometries
2019-09-27 Mark AbrahamFix gro file output with index groups
2019-09-23 Berk HessLimit Zen nbnxm kernel choice to Zen 1
2019-09-21 Berk HessFix incorrect shift forces for CMAP
2019-09-02 Berk HessFix incorrect rvdw on GPU with rvdw<rcoulomb
2019-08-26 Berk HessFix grompp constraints=all-angles with constraints
2019-08-23 Erik LindahlDefault to AVX2_256 SIMD for Zen2
2019-08-20 Berk HessFix missing bonded forces with CUDA GPUs and DD
2019-08-06 Mark AbrahamFix for MSVC+CUDA
2019-08-02 Berk HessMade gmx disre work with non-consecutively labeled...
2019-07-29 Berk HessFix segmentation fault with cosine pulling
2019-07-09 David van der SpoelFixed small bug in gmx anaeig
2019-07-08 Paul BauerFix issues found by clang-tidy 7
2019-07-02 Paul BauerFix bug in gmx xpm2ps
2019-06-19 Szilárd PállDisable PME GPU on Apple OpenCL
2019-06-14 Paul BauerMerge branch release-2018 into release-2019
2019-06-12 Paul BauerFix qsort not being defined on Apple Clang
2019-06-11 Mark AbrahamInitialize all of gmx_domdec_comm_t
2019-06-11 Paul BauerFix residue and molecule indexing in selections
2019-06-11 Paul BauerExtend information for gmxcpp syntax error.
2019-06-11 Berk HessAllow AWH geometry 'direction' to be periodic
2019-06-11 Paul BauerAdd check for too many grid points in hbond
2019-06-10 Berk HessFix gmx wham with angle geometries
2019-06-05 Berk HessFix reference SIMD memory alignment
2019-05-29 Berk HessFix missing intermolecular interactions with DD
2019-05-27 Berk HessWork around gcc 7 avx512 bug
2019-05-27 Paul BauerAdd more info for wrong line endings
2019-05-24 Paul BauerFix PQR formatting
2019-05-24 Paul BauerFix membrane embedding
2019-05-23 Berk HessFix SHAKE dH/dlambda contributions
2019-05-23 Mark AbrahamRevert "Fixed dvdlambda for SHAKE + FE"
2019-05-23 Paul BauerAdd check for allocating too many interactions
2019-05-02 Paul BauerFix FPE in do_steep
2019-04-16 Paul BauerFix off-by-one error in gmx cluster
2019-04-16 Berk HessMake mdrun -nsteps work again.
2019-04-15 Berk HessFix pdb-related issues
2019-04-15 Berk HessDisallow pull geometry direction-periodic with AWH
2019-04-13 Mark AbrahamFix self-consistency tests of hwloc data structures
2019-04-12 Mark AbrahamImprove warning messages about duplicate definitions
2019-04-05 Морозов ДмитрийFixes bug in l-bfgs.
2019-04-04 Paul BauerFix segmentation fault with simulated annealing
2019-03-28 Szilárd PállBetter document GMX_OPENMP_MAX_THREADS
2019-03-27 Roland SchulzFix UB vector usage
2019-03-19 Mark AbrahamPrevented FFTW build errors with clang and AVX-512
2019-03-11 Berk HessAdd grompp warning with use of GROMOS FF
2019-03-08 Roland SchulzFix ICC warnings
2019-03-05 Szilárd PállRelax OpenCL gather kernel barrier on AMD
2019-02-27 Jukka MaattaMake OpenCL dummyKernel to require a input parameter
2019-02-26 Mark AbrahamAdd new line to trjconv notice to users
2019-02-26 Berk HessCorrect grompp index file error message
2019-02-20 Berk HessFix mass Delta H double counting
2019-02-20 Berk HessFix incorrect LJ repulsion force switching on GPUs
2019-02-15 Mark AbrahamImproved diagnostics when PME cannot run on GPUs
2019-02-15 Paul BauerFix tune_pme
2019-02-15 Berk HessFix mass Delta H double counting
2019-02-14 Mark AbrahamFix use of selections referring to index groups
2019-02-14 Mark AbrahamRevert changes to implementation of insert-molecules...
2019-02-13 Paul BauerMove simulated tempering default setting
2019-02-09 Berk HessDisallow rerun with perturbed masses or constraints
2019-02-06 Berk HessFix segfault with EM, DD and group scheme
2019-02-01 Berk HessFix incorrect LJ repulsion force switching on GPUs
2019-01-30 Mark AbrahamMerge remote branch release-2018 into release-2019
2019-01-30 Szilárd PállFix double-increment of GPU NB launch subcounter
2019-01-29 Teemu MurtolaAvoid warnings with Apple Clang
2019-01-25 Roland SchulzWork-around for ICC bug in simd-tests
2019-01-23 Roland SchulzMerge release-2018 into release-2019
2019-01-23 Berk HessFix error with 2D/3D DLB
2019-01-21 Mark AbrahamFix trjconv -ndec
2019-01-18 Mark AbrahamDisabled internal clFFT when using MSVC with OpenCL
2019-01-16 Paul BauerFix memory leak in solvate
2019-01-14 Mark AbrahamImprove portability of PME on GPU code
2019-01-10 Mark AbrahamAdd more checks for division by zero
2019-01-09 Berk HessFix gcc-8 release warnings in tng_io
2019-01-08 Mark AbrahamFix trjconv -ndec
2019-01-08 Mark AbrahamSimplify reporting of GPU selection
2019-01-04 Szilárd PállFix formatting warning
2019-01-03 Berk HessFix segmentation fault in DD code
2019-01-02 Szilárd PállDo not whitelist the use of OpenCL 1.1 API
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