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Workaround for ICC 19u5 and 20initial
[alexxy/gromacs.git]
/
src
/
2020-01-07
Roland Schulz
Workaround for ICC 19u5 and 20initial
tree
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commitdiff
2019-12-23
Paul Bauer
Revert "Fix that tests intended for multiple ranks...
tree
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commitdiff
2019-12-20
Christian Blau
Remove problematic output of gmx angle
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commitdiff
2019-12-17
Paul Bauer
Fix formatting error
tree
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commitdiff
2019-12-17
Mark Abraham
Fix that tests intended for multiple ranks run that way
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commitdiff
2019-12-16
Szilárd Páll
Fix the GPU bonded stream with 1 PP + 1 PME rank
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commitdiff
2019-12-16
Paul Bauer
Fix torsion angle calculation
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commitdiff
2019-12-13
Paul Bauer
Check for using correct hwloc headers and runtime
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commitdiff
2019-12-10
Mark Abraham
Simplify gmxapi RPATH handling
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commitdiff
2019-12-06
Christian Blau
Change arbitrary units to counts in RMSD distance distr...
tree
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commitdiff
2019-11-28
Berk Hess
Remove assertion failure in AWH without initial stage
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commitdiff
2019-11-26
Berk Hess
Fix issues with AWH with periodic pulling
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commitdiff
2019-11-25
Christian Blau
Fix duplicate CONNECT records in pdb files
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commitdiff
2019-11-18
Berk Hess
Fix intermolecular interactions with DD
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commitdiff
2019-11-07
Berk Hess
Fix .gro large box writing
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commitdiff
2019-10-23
Berk Hess
Fix illegal memory access in FE calculations
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commitdiff
2019-10-09
Berk Hess
Increase spc minimization test tolerance
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commitdiff
2019-10-09
Berk Hess
Fix harmless OpenMP write race
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commitdiff
2019-10-09
Berk Hess
Fix GPU atom data init timer issue
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commitdiff
2019-10-09
Berk Hess
Fix random energy and virial with PME on GPU on a PME...
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commitdiff
2019-10-01
Paul Bauer
Fix chain ID handling in make_ndx
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commitdiff
2019-10-01
Berk Hess
Always output correct kinetic at last step
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commitdiff
2019-09-30
Berk Hess
Actually fix gmx wham with angle geometries
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commitdiff
2019-09-27
Mark Abraham
Fix gro file output with index groups
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commitdiff
2019-09-23
Berk Hess
Limit Zen nbnxm kernel choice to Zen 1
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commitdiff
2019-09-21
Berk Hess
Fix incorrect shift forces for CMAP
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commitdiff
2019-09-02
Berk Hess
Fix incorrect rvdw on GPU with rvdw<rcoulomb
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commitdiff
2019-08-26
Berk Hess
Fix grompp constraints=all-angles with constraints
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commitdiff
2019-08-23
Erik Lindahl
Default to AVX2_256 SIMD for Zen2
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commitdiff
2019-08-20
Berk Hess
Fix missing bonded forces with CUDA GPUs and DD
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commitdiff
2019-08-06
Mark Abraham
Fix for MSVC+CUDA
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commitdiff
2019-08-02
Berk Hess
Made gmx disre work with non-consecutively labeled...
tree
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commitdiff
2019-07-29
Berk Hess
Fix segmentation fault with cosine pulling
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commitdiff
2019-07-09
David van der Spoel
Fixed small bug in gmx anaeig
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commitdiff
2019-07-08
Paul Bauer
Fix issues found by clang-tidy 7
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commitdiff
2019-07-02
Paul Bauer
Fix bug in gmx xpm2ps
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commitdiff
2019-06-19
Szilárd Páll
Disable PME GPU on Apple OpenCL
tree
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commitdiff
2019-06-14
Paul Bauer
Merge branch release-2018 into release-2019
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commitdiff
2019-06-12
Paul Bauer
Fix qsort not being defined on Apple Clang
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commitdiff
2019-06-11
Mark Abraham
Initialize all of gmx_domdec_comm_t
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commitdiff
2019-06-11
Paul Bauer
Fix residue and molecule indexing in selections
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commitdiff
2019-06-11
Paul Bauer
Extend information for gmxcpp syntax error.
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commitdiff
2019-06-11
Berk Hess
Allow AWH geometry 'direction' to be periodic
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commitdiff
2019-06-11
Paul Bauer
Add check for too many grid points in hbond
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commitdiff
2019-06-10
Berk Hess
Fix gmx wham with angle geometries
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commitdiff
2019-06-05
Berk Hess
Fix reference SIMD memory alignment
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commitdiff
2019-05-29
Berk Hess
Fix missing intermolecular interactions with DD
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commitdiff
2019-05-27
Berk Hess
Work around gcc 7 avx512 bug
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commitdiff
2019-05-27
Paul Bauer
Add more info for wrong line endings
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commitdiff
2019-05-24
Paul Bauer
Fix PQR formatting
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commitdiff
2019-05-24
Paul Bauer
Fix membrane embedding
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commitdiff
2019-05-23
Berk Hess
Fix SHAKE dH/dlambda contributions
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commitdiff
2019-05-23
Mark Abraham
Revert "Fixed dvdlambda for SHAKE + FE"
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commitdiff
2019-05-23
Paul Bauer
Add check for allocating too many interactions
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commitdiff
2019-05-02
Paul Bauer
Fix FPE in do_steep
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commitdiff
2019-04-16
Paul Bauer
Fix off-by-one error in gmx cluster
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commitdiff
2019-04-16
Berk Hess
Make mdrun -nsteps work again.
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commitdiff
2019-04-15
Berk Hess
Fix pdb-related issues
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commitdiff
2019-04-15
Berk Hess
Disallow pull geometry direction-periodic with AWH
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commitdiff
2019-04-13
Mark Abraham
Fix self-consistency tests of hwloc data structures
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commitdiff
2019-04-12
Mark Abraham
Improve warning messages about duplicate definitions
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commitdiff
2019-04-05
Морозов Дмитрий
Fixes bug in l-bfgs.
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commitdiff
2019-04-04
Paul Bauer
Fix segmentation fault with simulated annealing
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commitdiff
2019-03-28
Szilárd Páll
Better document GMX_OPENMP_MAX_THREADS
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commitdiff
2019-03-27
Roland Schulz
Fix UB vector usage
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commitdiff
2019-03-19
Mark Abraham
Prevented FFTW build errors with clang and AVX-512
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commitdiff
2019-03-11
Berk Hess
Add grompp warning with use of GROMOS FF
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commitdiff
2019-03-08
Roland Schulz
Fix ICC warnings
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commitdiff
2019-03-05
Szilárd Páll
Relax OpenCL gather kernel barrier on AMD
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commitdiff
2019-02-27
Jukka Maatta
Make OpenCL dummyKernel to require a input parameter
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commitdiff
2019-02-26
Mark Abraham
Add new line to trjconv notice to users
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commitdiff
2019-02-26
Berk Hess
Correct grompp index file error message
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commitdiff
2019-02-20
Berk Hess
Fix mass Delta H double counting
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commitdiff
2019-02-20
Berk Hess
Fix incorrect LJ repulsion force switching on GPUs
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commitdiff
2019-02-15
Mark Abraham
Improved diagnostics when PME cannot run on GPUs
tree
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commitdiff
2019-02-15
Paul Bauer
Fix tune_pme
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commitdiff
2019-02-15
Berk Hess
Fix mass Delta H double counting
tree
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commitdiff
2019-02-14
Mark Abraham
Fix use of selections referring to index groups
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commitdiff
2019-02-14
Mark Abraham
Revert changes to implementation of insert-molecules...
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commitdiff
2019-02-13
Paul Bauer
Move simulated tempering default setting
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commitdiff
2019-02-09
Berk Hess
Disallow rerun with perturbed masses or constraints
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commitdiff
2019-02-06
Berk Hess
Fix segfault with EM, DD and group scheme
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commitdiff
2019-02-01
Berk Hess
Fix incorrect LJ repulsion force switching on GPUs
tree
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commitdiff
2019-01-30
Mark Abraham
Merge remote branch release-2018 into release-2019
tree
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commitdiff
2019-01-30
Szilárd Páll
Fix double-increment of GPU NB launch subcounter
tree
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commitdiff
2019-01-29
Teemu Murtola
Avoid warnings with Apple Clang
tree
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commitdiff
2019-01-25
Roland Schulz
Work-around for ICC bug in simd-tests
tree
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commitdiff
2019-01-23
Roland Schulz
Merge release-2018 into release-2019
tree
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commitdiff
2019-01-23
Berk Hess
Fix error with 2D/3D DLB
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commitdiff
2019-01-21
Mark Abraham
Fix trjconv -ndec
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commitdiff
2019-01-18
Mark Abraham
Disabled internal clFFT when using MSVC with OpenCL
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commitdiff
2019-01-16
Paul Bauer
Fix memory leak in solvate
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commitdiff
2019-01-14
Mark Abraham
Improve portability of PME on GPU code
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commitdiff
2019-01-10
Mark Abraham
Add more checks for division by zero
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commitdiff
2019-01-09
Berk Hess
Fix gcc-8 release warnings in tng_io
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commitdiff
2019-01-08
Mark Abraham
Fix trjconv -ndec
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commitdiff
2019-01-08
Mark Abraham
Simplify reporting of GPU selection
tree
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commitdiff
2019-01-04
Szilárd Páll
Fix formatting warning
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commitdiff
2019-01-03
Berk Hess
Fix segmentation fault in DD code
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commitdiff
2019-01-02
Szilárd Páll
Do not whitelist the use of OpenCL 1.1 API
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commitdiff
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