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Redefine the default boolean type to gmx_bool.
[alexxy/gromacs.git]
/
src
/
2010-08-25
Rossen Apostolov
Redefine the default boolean type to gmx_bool.
tree
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commitdiff
2010-08-25
Erik Lindahl
Added missing header include
tree
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commitdiff
2010-08-25
hess
turned on pdb2gmx Amber rtp renaming for pdb input...
tree
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commitdiff
2010-08-25
hess
fixed pdb2gmx not automatically changing termini rtp...
tree
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commitdiff
2010-08-25
David van der Spoel
Made genrestr -constr to produce constraints of type...
tree
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commitdiff
2010-08-25
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-25
Erik Lindahl
Made sure all source files have some copyright header...
tree
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commitdiff
2010-08-25
Mark Abraham
Fixed leak from unclosed directory handles when pdb2gmx...
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commitdiff
2010-08-25
Mark Abraham
Made pdb2gmx be slightly more helpful when using AMBER...
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commitdiff
2010-08-24
Erik Lindahl
Re-added openmm paper
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commitdiff
2010-08-24
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-24
Erik Lindahl
Updated intel syntax x86-64 asm files to also support...
tree
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commitdiff
2010-08-24
hess
pdb2gmx can now rename terminal rtp entries with rtp...
tree
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commitdiff
2010-08-24
Berk Hess
fixed pdb2gmx using start name iso end name for C-terminus
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commitdiff
2010-08-24
Berk Hess
fixed bug in search_rtp introduced in previous commit
tree
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commitdiff
2010-08-24
Berk Hess
updated gmx_membed.c for a VV update
tree
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commitdiff
2010-08-24
Berk Hess
fixed pdb2gmx behavior for nearly matching residue...
tree
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commitdiff
2010-08-24
hess
fixed too permissive check for pdb2gmx warning about...
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commitdiff
2010-08-24
hess
reenabled the pdb2gmx force field sorting
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commitdiff
2010-08-23
Rossen Apostolov
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-23
Rossen Apostolov
Fixed a typo about non-existing macro in OpenMM
tree
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commitdiff
2010-08-23
Christoph Junghans
Fixed threads flags in pc files for autotools
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commitdiff
2010-08-23
Berk Hess
removed the pdb2gmx -cwd option and updated the pdb2gmx...
tree
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commitdiff
2010-08-23
Berk Hess
pdb2gmx now prints the force field dir before the selec...
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commitdiff
2010-08-23
Mark Abraham
Two spelling fixes in comment and output
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commitdiff
2010-08-23
Pär Bjelkmar
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-23
Berk Hess
fixed mpi hang/crash with separate pme nodes and dd...
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commitdiff
2010-08-22
Erik Lindahl
Fixed uninitialized variable error in GB kernel with...
tree
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commitdiff
2010-08-22
Erik Lindahl
Fixed an unsigned/signed integer comparison
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commitdiff
2010-08-22
Erik Lindahl
Fixed two more instances of strcasecmp->gmx_strcasecmp
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commitdiff
2010-08-22
Erik Lindahl
Copied SSE intrinsics kernels from x86-64 to ia32
tree
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commitdiff
2010-08-22
Erik Lindahl
Replaced all occurences of str(n)casecmp with gmx_str...
tree
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commitdiff
2010-08-22
Erik Lindahl
Fixed stupid mistake where a statement was placed befor...
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commitdiff
2010-08-22
Erik Lindahl
Replaced testing of git version with testing for features
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commitdiff
2010-08-22
Erik Lindahl
Fixed naming problems for double precision Fortran...
tree
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commitdiff
2010-08-22
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-22
Erik Lindahl
Cleaned up all installed headers to remove strict depen...
tree
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commitdiff
2010-08-22
David van der Spoel
Fixed bug 417.
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commitdiff
2010-08-21
Erik Lindahl
Added F77 kernel setup headers
tree
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commitdiff
2010-08-21
Erik Lindahl
Fixed synchronization counter update for f77 kernels
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commitdiff
2010-08-21
Erik Lindahl
Fixed a bug for GB OBC born radius calculation in SSE2...
tree
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commitdiff
2010-08-21
Erik Lindahl
Fixed an uninitialized variable bug
tree
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commitdiff
2010-08-21
Erik Lindahl
Fixed a minor bug that caused Fortran builds to fail...
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commitdiff
2010-08-21
Erik Lindahl
Dont write nonpolar surface energy to energy file if...
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commitdiff
2010-08-21
Erik Lindahl
Fixed so Fortran kernels work again
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commitdiff
2010-08-21
Erik Lindahl
Fixed a chain rule error in double prec. SSE2 GB for...
tree
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commitdiff
2010-08-21
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-21
Erik Lindahl
Double precision SSE2 kernels for Generalized Born...
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commitdiff
2010-08-20
Sander Pronk
Added support for new mdp options controlling free...
tree
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commitdiff
2010-08-20
Berk Hess
added function do_cpte_n_reals to checkpoint.c
tree
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commitdiff
2010-08-20
Berk Hess
fixed automated DD/PME grid decomposition choice which...
tree
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commitdiff
2010-08-20
Berk Hess
disabled optimized IBM BlueGene converts2ints macro...
tree
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commitdiff
2010-08-20
Berk Hess
increased tpx_generation which should have been done...
tree
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commitdiff
2010-08-20
Berk Hess
eneconv now copies the new delta_t entry
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commitdiff
2010-08-20
Berk Hess
added dt to energy file frames
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commitdiff
2010-08-20
Berk Hess
added free and some comment to deprecated close_trj
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commitdiff
2010-08-20
Berk Hess
fixed segv's in g_anaeig
tree
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commitdiff
2010-08-19
David van der Spoel
Fixes more misery in function skipstr, where pointers...
tree
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commitdiff
2010-08-19
David van der Spoel
Added two missing include files. Fixed horrible coding...
tree
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commitdiff
2010-08-19
Sander Pronk
Fixed get_libdir() PATH search.
tree
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commitdiff
2010-08-19
Rossen Apostolov
Enable the Reference platform for OpenMM.
tree
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commitdiff
2010-08-19
Michael Shirts
Additional fixes to the nsttcouple and nstpcouple worki...
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commitdiff
2010-08-19
Michael Shirts
Additional changes for setting nsttcouple
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commitdiff
2010-08-19
Michael Shirts
Fix for readir.c so that nstpcouple and nsttcouple...
tree
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commitdiff
2010-08-19
Michael Shirts
Fixed bug with md-vv and with v-rescale
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commitdiff
2010-08-19
Michael Shirts
Proposed fix for v-rescale and berendsen for velocity...
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commitdiff
2010-08-19
Michael Shirts
Merge branch 'release-4-5-patches' of git@git.gromacs...
tree
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commitdiff
2010-08-18
Erik Lindahl
Updated GB SSE2 kernels, testing in progress now...
tree
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commitdiff
2010-08-18
Michael Shirts
Merge branch 'release-4-5-patches' of git@git.gromacs...
tree
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commitdiff
2010-08-18
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-18
Rossen Apostolov
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-18
Rossen Apostolov
Fixed the execution order in OpenMM so that the generat...
tree
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commitdiff
2010-08-18
Christoph Junghans
cmake: add so version to libs
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commitdiff
2010-08-18
Christoph Junghans
port lib suffixes to cmake
tree
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commitdiff
2010-08-18
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-18
Erik Lindahl
Fix to write GB and surface energy to separate terms...
tree
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commitdiff
2010-08-18
Berk Hess
reduced the warning limit for Berendsen T-coupling...
tree
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commitdiff
2010-08-18
Michael Shirts
Merge branch 'release-4-5-patches' of git@git.gromacs...
tree
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commitdiff
2010-08-18
Michael Shirts
Changed the way energy conservation bookeeping is done.
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commitdiff
2010-08-18
Berk Hess
removed the bNEMD boolean from the main MD loop and...
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commitdiff
2010-08-18
Berk Hess
added some comment to group grompp assignment options
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commitdiff
2010-08-18
Berk Hess
added group comparison to gmxcheck and print groups...
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commitdiff
2010-08-18
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-18
Erik Lindahl
Enabled double precision all-vs-all kernels. Tested...
tree
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commitdiff
2010-08-18
Berk Hess
fixed possible pathe string buffer overflow in get_libdir
tree
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commitdiff
2010-08-18
Erik Lindahl
Fixed simple typo in last commit
tree
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commitdiff
2010-08-18
Erik Lindahl
Fixed previous nasm-segv bug for intel-syntax SSE in...
tree
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commitdiff
2010-08-17
Erik Lindahl
Fixed 64-bit bug in SSE assembly (only visible with...
tree
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commitdiff
2010-08-17
Erik Lindahl
Worked around an internal compiler error for MSVC when...
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commitdiff
2010-08-17
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-17
Erik Lindahl
Deprecated -ins option to g_hbond since nobody seems...
tree
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commitdiff
2010-08-17
Sander Pronk
fsync fix for FAH core.
tree
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commitdiff
2010-08-17
Erik Lindahl
Copied all-vs-all change from x86-64 to ia32 kernels too
tree
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commitdiff
2010-08-17
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-17
Erik Lindahl
Fixed potential error in coulomb energy, and maybe...
tree
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commitdiff
2010-08-17
Michael Shirts
Merge branch 'release-4-5-patches' of git@git.gromacs...
tree
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commitdiff
2010-08-17
Christoph Junghans
store custom GMX defines in pkgconfig files for cmake
tree
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commitdiff
2010-08-17
Christoph Junghans
store custom GMX defines in pkgconfig files for autotools
tree
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commitdiff
2010-08-17
Berk Hess
added function rescale_velocities
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commitdiff
2010-08-17
Roland Schulz
Use always DIR_SEPARATOR
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commitdiff
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