BioD PNPI Git Repos - alexxy/gromacs.git/history

biod.pnpi.spb.ru / alexxy / gromacs.git / history

[alexxy/gromacs.git] / src / mdlib / update.c

2010-08-25	Rossen Apostolov	Redefine the default boolean type to gmx_bool.	blob \| commitdiff \| raw
2010-08-21	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	blob \| commitdiff \| raw \| diff to current
2010-08-19	Michael Shirts	Fixed bug with md-vv and with v-rescale	blob \| commitdiff \| raw \| diff to current
2010-08-19	Michael Shirts	Proposed fix for v-rescale and berendsen for velocity...	blob \| commitdiff \| raw \| diff to current
2010-08-03	Berk Hess	made vrescale and Berendsen tcouple work with VV, altho...	blob \| commitdiff \| raw \| diff to current
2010-07-30	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2010-07-30	Berk	added mdp parameters nsttcouple and nstpcouple	blob \| commitdiff \| raw \| diff to current
2010-07-21	Berk	corrected the order of the parallel inputrec and state...	blob \| commitdiff \| raw \| diff to current
2010-06-09	Gerrit Groenhof	Merge branch 'master' into qmmm	blob \| commitdiff \| raw \| diff to current
2010-04-27	Berk Hess	resolved merge conflicts	blob \| commitdiff \| raw \| diff to current
2010-03-02	Roland Schulz	Merge branch 'release-4-0-patches'	blob \| commitdiff \| raw \| diff to current
2010-02-17	Berk Hess	some clean-up in the VV code in do_md and fixed the...	blob \| commitdiff \| raw \| diff to current
2010-01-26	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2010-01-25	Berk Hess	fixed segv with integrator sd2	blob \| commitdiff \| raw \| diff to current
2010-01-19	David van der Spoel	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2010-01-07	Michael Shirts	Merge branch 'master' of git://git.gromacs.org/gromacs	blob \| commitdiff \| raw \| diff to current
2010-01-05	Roland Schulz	Undo Michael's accidental commits with:	blob \| commitdiff \| raw \| diff to current
2010-01-04	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-27	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-27	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-23	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-23	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-23	Michael Shirts	fixed sd (I think).	blob \| commitdiff \| raw \| diff to current
2009-12-22	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-22	Sander Pronk	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-22	Sander Pronk	Fixed some small issues - mdrun still doesn't work.	blob \| commitdiff \| raw \| diff to current
2009-12-21	David van der Spoel	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-20	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-19	Michael Shirts	Committing to merge	blob \| commitdiff \| raw \| diff to current
2009-12-19	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-19	Michael Shirts	Making the code thread safe (removing the static ints...	blob \| commitdiff \| raw \| diff to current
2009-12-17	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-17	Michael Shirts	Changed eiVV2 to eiVVAK, and "md-vv2" to "md-vv-avek...	blob \| commitdiff \| raw \| diff to current
2009-12-05	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-12-04	Michael Shirts	Rewrite of the half-step ekin for velocity verlet,...	blob \| commitdiff \| raw \| diff to current
2009-11-28	Michael Shirts	Majority of commits for correct checkpointing.	blob \| commitdiff \| raw \| diff to current
2009-11-23	Michael Shirts	Apparently works with all the methods now, both with...	blob \| commitdiff \| raw \| diff to current
2009-11-22	Michael Shirts	Checking in code that does all but NPT average Ekin.	blob \| commitdiff \| raw \| diff to current
2009-11-20	Michael Shirts	Working with velocity verlet / harmonic bonds with...	blob \| commitdiff \| raw \| diff to current
2009-11-20	Michael Shirts	Almost working now! not vv for average kinetic energy...	blob \| commitdiff \| raw \| diff to current
2009-11-19	Michael Shirts	Partway through with rationalization of different integ...	blob \| commitdiff \| raw \| diff to current
2009-11-17	Michael Shirts	bug fix for leap.	blob \| commitdiff \| raw \| diff to current
2009-11-17	Michael Shirts	Some fixes for starting with constraints. Right now...	blob \| commitdiff \| raw \| diff to current
2009-11-15	Michael Shirts	Changed the organization of trotter updates to make...	blob \| commitdiff \| raw \| diff to current
2009-11-14	Michael Shirts	changed setup of trotter decomposition to make it easie...	blob \| commitdiff \| raw \| diff to current
2009-10-25	Michael Shirts	Bug fix from last commit -- one change.	blob \| commitdiff \| raw \| diff to current
2009-10-25	Michael Shirts	added changes to take alpha out of the ir->opts. now...	blob \| commitdiff \| raw \| diff to current
2009-10-25	Michael Shirts	Made changes suggested by Berk.	blob \| commitdiff \| raw \| diff to current
2009-09-26	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-09-26	Michael Shirts	Now we are getting energy conservation with NPT, and...	blob \| commitdiff \| raw \| diff to current
2009-09-23	Michael Shirts	before I make any other mistakes . . .	blob \| commitdiff \| raw \| diff to current
2009-09-23	Michael Shirts	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-09-23	Michael Shirts	Code now almost conserves energy. I should investigate...	blob \| commitdiff \| raw \| diff to current
2009-09-19	Michael Shirts	About to make more drastic changes to try to fix conser...	blob \| commitdiff \| raw \| diff to current
2009-09-18	Michael Shirts	A number of changes to try to rationalize constraints...	blob \| commitdiff \| raw \| diff to current
2009-09-14	David van der Spoel	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-09-14	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-09-09	Michael Shirts	Merge branch 'master' of git://git.gromacs.org/gromacs	blob \| commitdiff \| raw \| diff to current
2009-09-09	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-09-07	Michael Shirts	A number of changes to gromacs_mrs. Almost working...	blob \| commitdiff \| raw \| diff to current
2009-09-07	Roland Schulz	renamed gmx_step_t to gmx_large_int_t. gmx_large_int_t...	blob \| commitdiff \| raw \| diff to current
2009-08-21	Sander Pronk	Merge branch 'thread_mpi'. Threads should work for...	blob \| commitdiff \| raw \| diff to current
2009-08-04	David van der Spoel	Merge branch 'master' of git@git.gromacs.org:gromacs	blob \| commitdiff \| raw \| diff to current
2009-08-03	Berk Hess	changed the twin-range integrator to a symplectic Trott...	blob \| commitdiff \| raw \| diff to current
2009-07-14	Berk Hess	added mdp parameters nstcalcenergy and rlistlong and...	blob \| commitdiff \| raw \| diff to current
2009-06-17	Sander Pronk	Merge branch 'thread_mpi'	blob \| commitdiff \| raw \| diff to current
2009-06-17	Berk Hess	removed static variables	blob \| commitdiff \| raw \| diff to current
2009-06-04	Erik Lindahl	Removed Id tags from master branch since they will...	blob \| commitdiff \| raw \| diff to current
2009-06-03	hess	moved the cos accel if statement into calc_ke_part	blob \| commitdiff \| raw \| diff to current
2009-06-03	hess	updated for C++ compilation	blob \| commitdiff \| raw \| diff to current
2009-06-02	hess	implemented exact v-rescale thermostating for small...	blob \| commitdiff \| raw \| diff to current
2009-05-13	hess	fixed v-rescale and Berendsen segv with PR p-couplingwi...	blob \| commitdiff \| raw \| diff to current
2009-05-13	hess	fixed v-rescale and Berendsen segv with PR p-coupling...	blob \| commitdiff \| raw \| diff to current
2009-04-09	hess	replaced the global buf vector by local vectors	blob \| commitdiff \| raw \| diff to current
2009-02-02	hess	changed most step count variables from int to gmx_step_t	blob \| commitdiff \| raw \| diff to current
2008-11-23	hess	made pressure/virial calculation optional	blob \| commitdiff \| raw \| diff to current
2008-10-15	hess	set velocity for frozen dof with nose-hoover integratio...	blob \| commitdiff \| raw \| diff to current
2008-10-15	hess	set velocity for frozen dof with nose-hoover integratio...	blob \| commitdiff \| raw \| diff to current
2008-10-09	hess	added missing coordinate scaling for Parrinello-Rahman...	blob \| commitdiff \| raw \| diff to current
2008-10-09	hess	added missing coordinate scaling for Parrinello-Rahman...	blob \| commitdiff \| raw \| diff to current
2008-09-21	hess	fixed the slight kinetic energy mismatch at continuatio...	blob \| commitdiff \| raw \| diff to current
2008-09-21	hess	fixed the slight kinetic energy mismatch at continuatio...	blob \| commitdiff \| raw \| diff to current
2008-08-12	hess	introced a new structure for the local topology in...	blob \| commitdiff \| raw \| diff to current
2008-08-11	hess	split the t_group struct into a gmx_ekindata_t struct...	blob \| commitdiff \| raw \| diff to current
2008-07-24	hess	implemented velocity rescaling thermostat and fixed...	blob \| commitdiff \| raw \| diff to current
2008-07-01	carsten	edsam pointer no longer needed in update. Removed do_ed...	blob \| commitdiff \| raw \| diff to current
2008-06-18	hess	the deform reference box is now only set after reading...	blob \| commitdiff \| raw \| diff to current
2008-06-18	hess	fixed binary exact checkpoint continuation with pressur...	blob \| commitdiff \| raw \| diff to current
2008-06-17	hess	implemented checkpointing for distance and orientation...	blob \| commitdiff \| raw \| diff to current
2008-06-10	hess	moved the Berendsen lambda initialization to a separate...	blob \| commitdiff \| raw \| diff to current
2008-04-15	hess	fixed checkpointing for parallel SD simulations	blob \| commitdiff \| raw \| diff to current
2008-04-11	hess	implemented checkpoint files	blob \| commitdiff \| raw \| diff to current
2008-03-14	hess	made the two step SD integrator the default sd again	blob \| commitdiff \| raw \| diff to current
2008-02-19	hess	shakefirst now calls constrain directly (no longer...	blob \| commitdiff \| raw \| diff to current
2008-02-13	hess	implemented box shape preservation for (semi)isotropic...	blob \| commitdiff \| raw \| diff to current
2008-02-03	hess	implemented Berendsen coupling with -nosum	blob \| commitdiff \| raw \| diff to current
2008-01-11	hess	made two separate sd integrator options	blob \| commitdiff \| raw \| diff to current
2008-01-08	hess	implemented domain decomposition for steep and cg	blob \| commitdiff \| raw \| diff to current
2008-01-03	hess	merged the pull calls into do_force() and constrain...	blob \| commitdiff \| raw \| diff to current
2007-11-27	hess	removed global variable stdlog	blob \| commitdiff \| raw \| diff to current
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