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Fixed the execution order in OpenMM so that the generated trajectory frames correspon...
[alexxy/gromacs.git]
/
include
/
2010-08-18
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-18
Erik Lindahl
Fix to write GB and surface energy to separate terms...
tree
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commitdiff
2010-08-18
Berk Hess
removed the bNEMD boolean from the main MD loop and...
tree
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commitdiff
2010-08-17
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-17
Sander Pronk
Fixed thread_mpi inline assembly issue and non-optimize...
tree
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commitdiff
2010-08-17
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-17
Berk Hess
added function rescale_velocities
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commitdiff
2010-08-16
Berk Hess
gmx_rmpbc gets natoms passed again, without natoms...
tree
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commitdiff
2010-08-16
Sander Pronk
Moved the OS-dependent part of gmx_fio_fsync() to futil.c
tree
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commitdiff
2010-08-13
Berk Hess
moved full precision real format definition to simple.h
tree
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commitdiff
2010-08-12
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-12
Erik Lindahl
Fixed checkpoint problem in 32 bits. We should always...
tree
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commitdiff
2010-08-12
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-12
Erik Lindahl
Fixed SSE kernels in double precision for Cmake, workin...
tree
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commitdiff
2010-08-11
Sander Pronk
C++ type fixes in thread_mpi atomics.
tree
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commitdiff
2010-08-11
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-11
Sander Pronk
Cmake now honors CFLAGS/CXXFLAGS as much as it can.
tree
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commitdiff
2010-08-10
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-10
Erik Lindahl
Changes to make Cmake work under windows again
tree
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commitdiff
2010-08-10
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-09
Sander Pronk
Now correctly checkpoints on dhdl histograms/lists...
tree
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commitdiff
2010-08-09
Berk
env.var. GMX_NB_GENERIC no turns off solvent optimizati...
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commitdiff
2010-08-09
Berk
added exclusion check for cg-cg innerloops
tree
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commitdiff
2010-08-08
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-06
Sander Pronk
BAR calculations can now store energy histograms in...
tree
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commitdiff
2010-08-06
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-05
Berk Hess
sc_sigma now also sets the minimum value for the soft...
tree
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commitdiff
2010-08-04
Erik Lindahl
Fixed nonexistent return type on gmx_mm_sincos_pd
tree
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commitdiff
2010-08-04
Erik Lindahl
Added out int-extraction macro to double precision...
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commitdiff
2010-08-04
Erik Lindahl
Added double precision SSE2 transcendental functions...
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commitdiff
2010-08-04
Erik Lindahl
Fixed accuracy issues in gmx_mm_log_ps(), and added...
tree
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commitdiff
2010-08-03
Berk Hess
made vrescale and Berendsen tcouple work with VV, altho...
tree
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commitdiff
2010-08-02
Erik Lindahl
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-02
Christoph Junghans
fixed linking of inputrec.h
tree
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commitdiff
2010-08-02
Erik Lindahl
Fixed error in (unused) SSE2 double precision inline...
tree
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commitdiff
2010-08-02
Sander Pronk
Fixed shared library build by removing references to...
tree
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commitdiff
2010-08-01
David van der Spoel
Merge branch 'release-4-5-patches' of git.gromacs.org...
tree
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commitdiff
2010-08-01
David van der Spoel
Moved pdb2top.h from src/kernel to include to allow...
tree
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commitdiff
2010-07-30
Erik Lindahl
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-30
Erik Lindahl
Replaced non-thread-safe calls to ctime() with our...
tree
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commitdiff
2010-07-30
Berk
added mdp parameters nsttcouple and nstpcouple
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commitdiff
2010-07-30
Christoph Junghans
removed old motif stuff from statutil.h
tree
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commitdiff
2010-07-30
Christoph Junghans
remove some deprecated headers, which are not used...
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commitdiff
2010-07-30
Sander Pronk
More onerous locking of open_files in gmx_fio.
tree
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commitdiff
2010-07-30
Erik Lindahl
Added portable gmx_ctime_r() to enable replacement...
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commitdiff
2010-07-30
Erik Lindahl
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-30
Erik Lindahl
Replaced readdir() with readdir_r() to avoid future...
tree
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commitdiff
2010-07-30
Erik Lindahl
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-30
Berk
commented out nthreads and threadid in t_commrec to...
tree
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commitdiff
2010-07-29
Rossen Apostolov
Removed OpenMM interface from autoconf, use CMake inste...
tree
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commitdiff
2010-07-29
Erik Lindahl
Worked around cross-inclusion problem between grompp...
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commitdiff
2010-07-29
Erik Lindahl
Removed deprecated nsb.h header
tree
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commitdiff
2010-07-29
Erik Lindahl
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-29
Berk
replaced all size_t in t_enxblock by int to avoid casts
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commitdiff
2010-07-29
Berk
added 12-6 wall potential
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commitdiff
2010-07-29
Christoph Junghans
Merge branch 'master' of git://git.gromacs.org/gromacs
tree
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commitdiff
2010-07-28
Christoph Junghans
Merge branch 'master' of git://git.gromacs.org/gromacs
tree
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commitdiff
2010-07-28
Christoph Junghans
fixed rest of include typos in headers
tree
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commitdiff
2010-07-28
Berk Hess
renamed pme_maxshift0/1 to pme_maxshift_x/y
tree
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commitdiff
2010-07-28
Christoph Junghans
fixed some include typos in headers
tree
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commitdiff
2010-07-27
Erik Lindahl
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-27
Erik Lindahl
Added missing double prec. SSE2 header file
tree
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commitdiff
2010-07-27
Erik Lindahl
Modified PDB io code to merely store the chain _identif...
tree
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commitdiff
2010-07-26
Erik Lindahl
Added lots of missing cmakedefines to config.h.cmakein
tree
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commitdiff
2010-07-26
Sander Pronk
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-26
Sander Pronk
Added support for Windows _fseeki64.
tree
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commitdiff
2010-07-26
Sander Pronk
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-26
Sander Pronk
Fixed faulty commit.
tree
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commitdiff
2010-07-26
Erik Lindahl
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-26
Sander Pronk
Removed redundant header files from thread_mpi.
tree
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commitdiff
2010-07-26
Erik Lindahl
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-26
Berk Hess
added natoms_force_constr to t_forcerec
tree
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commitdiff
2010-07-25
Erik Lindahl
Resolved merge conflict
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commitdiff
2010-07-25
Erik Lindahl
Fixed bug for small systems in all-vs-all kernels,...
tree
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commitdiff
2010-07-25
Erik Lindahl
Added a POSIX/Windows portable way to scan directories...
tree
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commitdiff
2010-07-24
Erik Lindahl
Second batch of file modifications to enable Amber...
tree
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commitdiff
2010-07-24
Sander Pronk
New .edr file format: now supports blocks of arbitrary...
tree
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commitdiff
2010-07-23
Berk
resolved an exception issue which could make PME slow
tree
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commitdiff
2010-07-23
Berk
hopefully fixed the genborn allocation issue
tree
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commitdiff
2010-07-22
Christoph Junghans
fixed some include typos in headers
tree
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commitdiff
2010-07-22
Sander Pronk
Serialized access to FORTRAN bindings of gromacs's...
tree
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commitdiff
2010-07-21
Sander Pronk
Removed reference to orig.h in thread_mpi Makefile.am
tree
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commitdiff
2010-07-21
Sander Pronk
thread_mpi header files are now in sync with source...
tree
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commitdiff
2010-07-21
Berk
corrected the order of the parallel inputrec and state...
tree
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commitdiff
2010-07-19
Berk Hess
fixed mdrun append check when requested output file...
tree
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commitdiff
2010-07-14
Carsten Kutzner
Fixed several minor issues in ED/flooding module
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commitdiff
2010-07-12
David van der Spoel
Merge branch 'master' of git@git.gromacs.org:gromacs
tree
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commitdiff
2010-07-10
Michael Shirts
Fixed minor formatting conflict.
tree
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commitdiff
2010-07-10
Michael Shirts
Fixing the include file definition for trotter_update.
tree
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commitdiff
2010-07-08
David van der Spoel
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-07
David van der Spoel
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-07
David van der Spoel
Fixed miserable bug in commrec.h where an int array...
tree
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commitdiff
2010-07-06
Per Larsson
Merge branch 'master' of git@git.gromacs.org:gromacs
tree
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commitdiff
2010-07-06
Berk Hess
added mdp parameter for FE dH tables
tree
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commitdiff
2010-07-05
Maarten Wolf
Merge branch 'master' of git@git.gromacs.org:gromacs
tree
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commitdiff
2010-07-05
Sander Pronk
Added option to ingore fsync failures.
tree
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commitdiff
2010-07-05
Berk Hess
removed a lot of slow FFT grid sizes from calc_grid...
tree
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commitdiff
2010-07-05
Maarten Wolf
Merge branch 'master' of git@git.gromacs.org:gromacs
tree
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commitdiff
2010-07-05
David van der Spoel
Merge branch 'master' of git.gromacs.org:gromacs
tree
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commitdiff
2010-07-05
Sander Pronk
Added missing include files in thread_mpi
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commitdiff
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