Allow overlapping CPU force H2D with compute
[alexxy/gromacs.git] / docs /
2019-12-12 Christian BlauDensityfitting - enforce similarity increase with adapt...
2019-12-11 Artem ZhmurovClarify what setting zero to some output mdp options...
2019-12-11 M. Eric Irrganggmxapi landing page update.
2019-12-11 M. Eric Irrganggmxapi documentation readability improvements.
2019-12-11 M. Eric Irrganggmxapi documentation formatting improvements.
2019-12-06 M. Eric IrrgangAdd notes on MPI with gmxapi Python package.
2019-12-06 M. Eric Irrganggmxapi Python package usage prose.
2019-12-01 Paul BauerUse DOI for citing in reference manual section
2019-11-29 Berk HessMerge "Merge branch release-2019 into release-2020...
2019-11-29 Mark AbrahamMerge branch release-2019 into release-2020
2019-11-28 Berk HessUpdate documenation for NPT GPU update
2019-11-28 Berk HessRemove assertion failure in AWH without initial stage
2019-11-26 Berk HessFix issues with AWH with periodic pulling
2019-11-25 Christian BlauFix duplicate CONNECT records in pdb files
2019-11-25 Christian BlauRead mrc density map format with all endianesses.
2019-11-20 Vedran MiletićFix building on Solaris with GCC
2019-11-20 Paul BauerMerge 'origin/release-2019' into release-2020
2019-11-20 M. Eric IrrgangRemove stub content from gmxapi docs.
2019-11-19 Mark AbrahamUpdated release notes for CODATA update
2019-11-18 Berk HessFix intermolecular interactions with DD
2019-11-17 M. Eric IrrgangRemove extraneous file.
2019-11-17 M. Eric IrrgangAdd transitional links for online gmxapi Python package...
2019-11-12 Paul BauerIndicate which versions are no longer supported
2019-11-07 Berk HessFix .gro large box writing
2019-11-07 Christian BlauStochastic dynamics - document that nsttcouple is ignored
2019-11-06 Berk HessDeprecated sc-r-power=48
2019-11-06 Erik LindahlWork around broken Apple compilers in Mac OS 10.15
2019-11-06 Erik LindahlWork around broken Apple compilers in Mac OS 10.15
2019-11-04 Paul BauerAdd build for clang-format
2019-11-04 Paul BauerSplit up source code formatting scripts
2019-11-04 M. Eric IrrgangUpdate gmxapi Python documentation instructions.
2019-11-03 M. Eric IrrgangUpdate Sphinx link.
2019-11-03 M. Eric IrrgangFix typos.
2019-11-01 M. Eric IrrgangFix documentation typo.
2019-11-01 Paul BauerPrepare for 2020 beta 2
2019-11-01 Paul BauerAdd validation of tarball builds
2019-10-31 M. Eric IrrgangImprove uniformity of OS X CMake configuration.
2019-10-31 Berk HessUpdate GPU update restrictions
2019-10-30 Pascal MerzFix modular simulator documentation
2019-10-29 Berk HessAdd mdrun GPU update documentation
2019-10-29 Paul BauerMerge "Merge branch 'release-2019' into master"
2019-10-29 Paul BauerMerge branch 'release-2019' into master
2019-10-23 Berk HessFix illegal memory access in FE calculations
2019-10-21 Artem ZhmurovUpdate the copyright message
2019-10-18 Christian BlauManual entry and .mdp option for adaptive force scaling
2019-10-18 Christian Blaugenion: prohibit ion placement close to non-solvent
2019-10-15 M. Eric IrrgangAdd note about libpython requirement to gmxapi install...
2019-10-09 Berk HessFix random energy and virial with PME on GPU on a PME...
2019-10-08 Berk HessMake nbnxm a proper module
2019-10-03 M. Eric IrrgangBuild gmxapi documentation in main GROMACS documentation.
2019-10-02 Carsten KutznerUpdate the www link to the Doxygen documentation in...
2019-10-02 Carsten KutznerUpdate the www link to the Doxygen documentation in...
2019-10-02 Paul BauerPrepare for 2019.5
2019-10-02 Paul BauerGROMACS version 2019.4
2019-10-01 Paul BauerFix chain ID handling in make_ndx
2019-10-01 Berk HessAlways output correct kinetic at last step
2019-09-30 Berk HessActually fix gmx wham with angle geometries
2019-09-27 Berk HessFix location of angle in vsite figure
2019-09-27 Mark AbrahamFix gro file output with index groups
2019-09-25 Szilárd PállMerge remote-tracking branch 'origin/release-2019'
2019-09-25 Mark AbrahamFix log file flag output
2019-09-24 Mark AbrahamMerge "Merge branch release-2019 into master"
2019-09-24 Paul BauerMerge branch release-2019 into master
2019-09-24 Paul BauerAdd release notes for modular simulator
2019-09-23 Berk HessLimit Zen nbnxm kernel choice to Zen 1
2019-09-23 Christian BlauGrompp error for mismatching nst for energy calulation...
2019-09-23 Christian BlauAmendments to density fitting manual section
2019-09-22 Christian BlauAdd cross-correlation as density simlarity measure
2019-09-21 Berk HessFix incorrect shift forces for CMAP
2019-09-19 Berk HessRemove charge group data from t_forcerec
2019-09-18 Berk HessAdded free-energy kernel performance note
2019-09-18 Christian BlauAdd mdp option documentation for density fitting.
2019-09-17 Paul BauerAdd deprecation note for 32 bit
2019-09-17 Pascal MerzMake modular simulator the default code path for md...
2019-09-17 Pascal MerzEnable checkpointing for modular simulator
2019-09-16 Berk HessRemove obsolete mdp option ns-type
2019-09-16 Paul BauerFormatting fixes for reference manual
2019-09-16 M. Eric IrrgangAdd gmxapi release notes.
2019-09-16 Berk HessAdd virtual site type 2FD
2019-09-16 Berk HessRemove cut-off schemes from manual
2019-09-16 Kevin BoydRemove group scheme from deprecated release notes
2019-09-15 Pascal MerzIntroduce the modular simulator
2019-09-15 M. Eric IrrgangImport gmxapi docs to main GROMACS docs directory.
2019-09-13 Paul BauerAdd list of unsupported functions in 2020
2019-09-12 Berk HessUpdated mdp documentation for group scheme removal
2019-09-12 Christian BlauManual entry for density guided simulations
2019-09-12 Christian BlauAdd release note for density fitting.
2019-09-12 Berk HessEnable TPI with the Verlet cut-off scheme
2019-09-11 Paul BauerRemove -sub option from trjconv
2019-09-10 Paul BauerAdd method to extract clusters from trajectory
2019-09-10 Pascal MerzCompositeSimulatorElement for the modular simulator
2019-09-10 Pascal MerzCoordinate Propagators
2019-09-10 Pascal MerzConstraint element for the modular simulator
2019-09-09 Pascal MerzDomain decomposition and PME load balancing for modular...
2019-09-09 Paul BauerAdd gmx convert-trj
2019-09-07 Pascal MerzForceElement and ShellFCElement for the modular simulator
2019-09-06 Pascal MerzComputeGlobalsElement for the modular simulator
2019-09-05 Pascal MerzIntroduce topology class for modular simulator
2019-09-05 Pascal MerzRename MicroState to StatePropagatorData for modular...
2019-09-03 Pascal MerzIntroduce energy element for modular simulator
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