/*
- *
+ *
* This source code is part of
- *
+ *
* G R O M A C S
- *
+ *
* GROningen MAchine for Chemical Simulations
- *
+ *
* VERSION 3.2.0
* Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
* Copyright (c) 1991-2000, University of Groningen, The Netherlands.
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
- *
+ *
* If you want to redistribute modifications, please consider that
* scientific software is very special. Version control is crucial -
* bugs must be traceable. We will be happy to consider code for
* inclusion in the official distribution, but derived work must not
* be called official GROMACS. Details are found in the README & COPYING
* files - if they are missing, get the official version at www.gromacs.org.
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+ *
* To help us fund GROMACS development, we humbly ask that you cite
* the papers on the package - you can find them in the top README file.
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* For more info, check our website at http://www.gromacs.org
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* And Hey:
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*/
#define _pp2shift_h
#include "typedefs.h"
-
+
/* must correspond with 'leg' g_chi.c:727 */
-enum { edPhi=0, edPsi, edOmega, edChi1, edChi2, edChi3, edChi4, edChi5, edChi6, edMax };
+enum {
+ edPhi = 0, edPsi, edOmega, edChi1, edChi2, edChi3, edChi4, edChi5, edChi6, edMax
+};
-enum { edPrintST=0,edPrintRO } ;
+enum {
+ edPrintST = 0, edPrintRO
+};
#define NHISTO 360
#define NONCHI 3
#define MAXCHI edMax-NONCHI
-#define NROT 4 /* number of rotamers: 1=g(-), 2=t, 3=g(+), 0=other */
+#define NROT 4 /* number of rotamers: 1=g(-), 2=t, 3=g(+), 0=other */
typedef struct {
- int minO,minC,H,N,C,O,Cn[MAXCHI+3];
+ int minO, minC, H, N, C, O, Cn[MAXCHI+3];
} t_dihatms; /* Cn[0]=N, Cn[1]=Ca, Cn[2]=Cb etc. */
typedef struct {
- char name[12];
- int resnr;
- int index; /* Index for amino acids (histograms) */
- int j0[edMax]; /* Index in dih array (phi angle is first...) */
- t_dihatms atm;
- int b[edMax];
- int ntr[edMax];
- real S2[edMax];
- real rot_occ[edMax][NROT];
+ char name[12];
+ int resnr;
+ int index; /* Index for amino acids (histograms) */
+ int j0[edMax]; /* Index in dih array (phi angle is first...) */
+ t_dihatms atm;
+ int b[edMax];
+ int ntr[edMax];
+ real S2[edMax];
+ real rot_occ[edMax][NROT];
} t_dlist;
-extern void do_pp2shifts(FILE *fp,int nframes,
- int nlist,t_dlist dlist[],real **dih);
-
-extern gmx_bool has_dihedral(int Dih,t_dlist *dl);
-
-extern t_dlist *mk_dlist(FILE *log,
- t_atoms *atoms, int *nlist,
- gmx_bool bPhi, gmx_bool bPsi, gmx_bool bChi, int maxchi,
- int r0, gmx_residuetype_t rt);
-
-extern void pr_dlist(FILE *fp,int nl,t_dlist dl[],real dt, int printtype,
-gmx_bool bPhi, gmx_bool bPsi,gmx_bool bChi,gmx_bool bOmega, int maxchi);
+extern void do_pp2shifts(FILE *fp, int nframes,
+ int nlist, t_dlist dlist[], real **dih);
-extern int pr_trans(FILE *fp,int nl,t_dlist dl[],real dt,int Xi);
+extern gmx_bool has_dihedral(int Dih, t_dlist *dl);
-extern void mk_chi_lookup (int **lookup, int maxchi, real **dih,
- int nlist, t_dlist dlist[]) ;
+extern t_dlist *mk_dlist(FILE *log,
+ t_atoms *atoms, int *nlist,
+ gmx_bool bPhi, gmx_bool bPsi, gmx_bool bChi, int maxchi,
+ int r0, gmx_residuetype_t rt);
-extern void get_chi_product_traj (real **dih,int nframes,int nangles,
- int nlist,int maxchi, t_dlist dlist[], real time[],
- int **lookup,int *multiplicity,gmx_bool bRb,gmx_bool bNormalize,
- real core_frac);
-
-#endif
+extern void pr_dlist(FILE *fp, int nl, t_dlist dl[], real dt, int printtype,
+ gmx_bool bPhi, gmx_bool bPsi, gmx_bool bChi, gmx_bool bOmega, int maxchi);
+extern int pr_trans(FILE *fp, int nl, t_dlist dl[], real dt, int Xi);
+extern void mk_chi_lookup (int **lookup, int maxchi, real **dih,
+ int nlist, t_dlist dlist[]);
+extern void get_chi_product_traj (real **dih, int nframes, int nangles,
+ int nlist, int maxchi, t_dlist dlist[], real time[],
+ int **lookup, int *multiplicity, gmx_bool bRb, gmx_bool bNormalize,
+ real core_frac);
+#endif