"in the correct matrix format.",
"Matrix data may be generated by programs such as [TT]do_dssp[tt], [TT]g_rms[tt] or",
"[TT]g_mdmat[tt].[PAR]",
- "Parameters are set in the [TT]m2p[tt] file optionally supplied with",
- "[TT]-di[tt]. Reasonable defaults are provided. Settings for the y-axis",
- "default to those for the x-axis. Font names have a defaulting hierarchy:",
+ "Parameters are set in the [TT].m2p[tt] file optionally supplied with",
+ "[TT]-di[tt]. Reasonable defaults are provided. Settings for the [IT]y[it]-axis",
+ "default to those for the [IT]x[it]-axis. Font names have a defaulting hierarchy:",
"titlefont -> legendfont; titlefont -> (xfont -> yfont -> ytickfont)",
"-> xtickfont, e.g. setting titlefont sets all fonts, setting xfont",
"sets yfont, ytickfont and xtickfont.[PAR]",
- "When no [TT]m2p[tt] file is supplied, many settings are taken from",
+ "When no [TT].m2p[tt] file is supplied, many settings are taken from",
"command line options. The most important option is [TT]-size[tt],",
"which sets the size of the whole matrix in postscript units.",
"This option can be overridden with the [TT]-bx[tt] and [TT]-by[tt]",
- "options (and the corresponding parameters in the [TT]m2p[tt] file),",
+ "options (and the corresponding parameters in the [TT].m2p[tt] file),",
"which set the size of a single matrix element.[PAR]",
"With [TT]-f2[tt] a second matrix file can be supplied. Both matrix",
"files will be read simultaneously and the upper left half of the",
"with [TT]-cmin[tt] and [TT]-cmax[tt].[PAR]",
"[TT]-title[tt] can be set to [TT]none[tt] to suppress the title, or to",
"[TT]ylabel[tt] to show the title in the Y-label position (alongside",
- "the Y-axis).[PAR]",
+ "the [IT]y[it]-axis).[PAR]",
"With the [TT]-rainbow[tt] option, dull grayscale matrices can be turned",
"into attractive color pictures.[PAR]",
"Merged or rainbowed matrices can be written to an XPixelMap file with",