BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Justin Lemkul <jalemkul@vt.edu>
	Wed, 23 Mar 2011 00:41:46 +0000 (20:41 -0400)
committer	Justin Lemkul <jalemkul@vt.edu>
	Wed, 23 Mar 2011 00:41:46 +0000 (20:41 -0400)
commit	2d43d9c37e555337271b0b65f2fccb5354f3b917
tree	4ad59873ab59885544fda22d77ab3064a8235fe6	tree \| snapshot
parent	222c87b77f17a099c4b908ab23fe19ad93a249dc	commit \| diff

Tons of small fixes to documentation.

These are a lot of editorial fixes (style, typos, etc) but also an
introduction of symbols in equations and normal text that I think (1)
makes the manual look prettier and (2) makes the terminology easier to
follow throughout the manual, back to earlier chapters, etc.

58 files changed:

src/gmxlib/wman.c		diff \| blob \| history
src/kernel/g_protonate.c		diff \| blob \| history
src/kernel/g_x2top.c		diff \| blob \| history
src/kernel/grompp.c		diff \| blob \| history
src/kernel/mdrun.c		diff \| blob \| history
src/kernel/pdb2gmx.c		diff \| blob \| history
src/kernel/tpbconv.c		diff \| blob \| history
src/ngmx/ngmx.c		diff \| blob \| history
src/tools/do_dssp.c		diff \| blob \| history
src/tools/g_sigeps.c		diff \| blob \| history
src/tools/gmx_anaeig.c		diff \| blob \| history
src/tools/gmx_analyze.c		diff \| blob \| history
src/tools/gmx_bar.c		diff \| blob \| history
src/tools/gmx_bundle.c		diff \| blob \| history
src/tools/gmx_chi.c		diff \| blob \| history
src/tools/gmx_current.c		diff \| blob \| history
src/tools/gmx_dielectric.c		diff \| blob \| history
src/tools/gmx_dipoles.c		diff \| blob \| history
src/tools/gmx_dist.c		diff \| blob \| history
src/tools/gmx_dyndom.c		diff \| blob \| history
src/tools/gmx_editconf.c		diff \| blob \| history
src/tools/gmx_eneconv.c		diff \| blob \| history
src/tools/gmx_enemat.c		diff \| blob \| history
src/tools/gmx_energy.c		diff \| blob \| history
src/tools/gmx_filter.c		diff \| blob \| history
src/tools/gmx_genbox.c		diff \| blob \| history
src/tools/gmx_genconf.c		diff \| blob \| history
src/tools/gmx_genion.c		diff \| blob \| history
src/tools/gmx_genpr.c		diff \| blob \| history
src/tools/gmx_gyrate.c		diff \| blob \| history
src/tools/gmx_hbond.c		diff \| blob \| history
src/tools/gmx_helix.c		diff \| blob \| history
src/tools/gmx_helixorient.c		diff \| blob \| history
src/tools/gmx_kinetics.c		diff \| blob \| history
src/tools/gmx_membed.c		diff \| blob \| history
src/tools/gmx_morph.c		diff \| blob \| history
src/tools/gmx_nmeig.c		diff \| blob \| history
src/tools/gmx_order.c		diff \| blob \| history
src/tools/gmx_rama.c		diff \| blob \| history
src/tools/gmx_rdf.c		diff \| blob \| history
src/tools/gmx_rms.c		diff \| blob \| history
src/tools/gmx_rotmat.c		diff \| blob \| history
src/tools/gmx_saltbr.c		diff \| blob \| history
src/tools/gmx_sas.c		diff \| blob \| history
src/tools/gmx_sgangle.c		diff \| blob \| history
src/tools/gmx_sham.c		diff \| blob \| history
src/tools/gmx_sorient.c		diff \| blob \| history
src/tools/gmx_spatial.c		diff \| blob \| history
src/tools/gmx_spol.c		diff \| blob \| history
src/tools/gmx_tcaf.c		diff \| blob \| history
src/tools/gmx_trjcat.c		diff \| blob \| history
src/tools/gmx_trjorder.c		diff \| blob \| history
src/tools/gmx_tune_pme.c		diff \| blob \| history
src/tools/gmx_wham.c		diff \| blob \| history
src/tools/gmx_wheel.c		diff \| blob \| history
src/tools/gmx_xpm2ps.c		diff \| blob \| history
src/tools/make_edi.c		diff \| blob \| history
src/tools/make_ndx.c		diff \| blob \| history

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