Tons of small fixes to documentation.

[alexxy/gromacs.git] / src / tools / gmx_sham.c

diff --git a/src/tools/gmx_sham.c b/src/tools/gmx_sham.c
index 91b1e35823aee355d54702bf0dacece71d123848..63b8c67b0dde2ea66c536947bd8e88c5ad68bf8e 100644 (file)
--- a/src/tools/gmx_sham.c
+++ b/src/tools/gmx_sham.c
@@ -686,10 +686,10 @@ int gmx_sham(int argc,char *argv[])
     "make enthalpy (option [TT]-lsh[tt]) and entropy (option [TT]-lss[tt])",
     "plots. The histograms can be made for any quantities the user supplies.",
     "A line in the input file may start with a time",
-    "(see option [TT]-time[tt]) and any number of y values may follow.",
+    "(see option [TT]-time[tt]) and any number of [IT]y[it]-values may follow.",
     "Multiple sets can also be",
     "read when they are separated by & (option [TT]-n[tt]),",
-    "in this case only one y value is read from each line.",
+    "in this case only one [IT]y[it]-value is read from each line.",
     "All lines starting with # and @ are skipped.",
     "[PAR]",
     "Option [TT]-ge[tt] can be used to supply a file with free energies",
@@ -699,7 +699,7 @@ int gmx_sham(int argc,char *argv[])
     "[PAR]",
     "Option [TT]-ene[tt] can be used to supply a file with energies.",
     "These energies are used as a weighting function in the single",
-    "histogram analysis method by Kumar et. al. When temperatures",
+    "histogram analysis method by Kumar et al. When temperatures",
     "are supplied (as a second column in the file), an experimental",
     "weighting scheme is applied. In addition the vales",
     "are used for making enthalpy and entropy plots.",
@@ -709,7 +709,7 @@ int gmx_sham(int argc,char *argv[])
     "sampled by two particles increases with increasing distance.",
     "Depending on what one would like to show, one can choose to correct",
     "the histogram and free-energy for this volume effect.",
-    "The probability is normalized by r and r^2 for a dimension of 2 and 3",
+    "The probability is normalized by r and r^2 for dimensions of 2 and 3, ",
     "respectively.",
     "A value of -1 is used to indicate an angle in degrees between two",
     "vectors: a sin(angle) normalization will be applied.",