Tons of small fixes to documentation.

[alexxy/gromacs.git] / src / tools / gmx_genpr.c

diff --git a/src/tools/gmx_genpr.c b/src/tools/gmx_genpr.c
index db91ea744741cd4a4fb8f60acb89c8ffce4c13f1..6463fbd6def6ca67485128a3c9820dd500304f3c 100644 (file)
--- a/src/tools/gmx_genpr.c
+++ b/src/tools/gmx_genpr.c
@@ -56,7 +56,7 @@ int gmx_genpr(int argc,char *argv[])
   const char *desc[] = {
     "[TT]genrestr[tt] produces an include file for a topology containing",
     "a list of atom numbers and three force constants for the",
-    "X, Y and Z direction. A single isotropic force constant may",
+    "[IT]x[it]-, [IT]y[it]-, and [IT]z[it]-direction. A single isotropic force constant may",
     "be given on the command line instead of three components.[PAR]",
     "WARNING: position restraints only work for the one molecule at a time.",
     "Position restraints are interactions within molecules, therefore",
@@ -69,7 +69,7 @@ int gmx_genpr(int argc,char *argv[])
     "freezing atoms. In this case, the input file must be a [TT].pdb[tt] file.[PAR]",
     "With the [TT]-disre[tt] option, half a matrix of distance restraints",
     "is generated instead of position restraints. With this matrix, that",
-    "one typically would apply to C-alpha atoms in a protein, one can",
+    "one typically would apply to C[GRK]alpha[grk] atoms in a protein, one can",
     "maintain the overall conformation of a protein without tieing it to",
     "a specific position (as with position restraints)."
   };
@@ -84,7 +84,7 @@ int gmx_genpr(int argc,char *argv[])
        
   t_pargs pa[] = {
     { "-fc", FALSE, etRVEC, {fc}, 
-      "force constants (kJ mol-1 nm-2)" },
+      "force constants (kJ/mol nm^2)" },
     { "-freeze", FALSE, etREAL, {&freeze_level},
       "if the [TT]-of[tt] option or this one is given an index file will be written containing atom numbers of all atoms that have a B-factor less than the level given here" },
     { "-disre", FALSE, etBOOL, {&bDisre},