"reads a trajectory file and computes the secondary structure for",
"each time frame ",
"calling the dssp program. If you do not have the dssp program,",
- "get it. [TT]do_dssp[tt] assumes that the dssp executable is",
- "/usr/local/bin/dssp. If this is not the case, then you should",
+ "get it from http://swift.cmbi.ru.nl/gv/dssp. [TT]do_dssp[tt] assumes ",
+ "that the dssp executable is located in ",
+ "[TT]/usr/local/bin/dssp[tt]. If this is not the case, then you should",
"set an environment variable [TT]DSSP[tt] pointing to the dssp",
"executable, e.g.: [PAR]",
"[TT]setenv DSSP /opt/dssp/bin/dssp[tt][PAR]",