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/*! \internal \file
* \brief
* - Tests for XVG labels. This is a limitation of the current testing
* framework.
*
- * \author Teemu Murtola <teemu.murtola@cbr.su.se>
+ * \author Teemu Murtola <teemu.murtola@gmail.com>
* \ingroup module_trajectoryanalysis
*/
-#include <gtest/gtest.h>
+#include "gmxpre.h"
#include "gromacs/trajectoryanalysis/modules/select.h"
+#include <gtest/gtest.h>
+
#include "testutils/cmdlinetest.h"
#include "moduletest.h"
*/
//! Test fixture for the select analysis module.
-typedef gmx::test::TrajectoryAnalysisModuleTestFixture<gmx::analysismodules::Select>
- SelectModuleTest;
+typedef gmx::test::TrajectoryAnalysisModuleTestFixture<gmx::analysismodules::SelectInfo>
+ SelectModuleTest;
TEST_F(SelectModuleTest, BasicTest)
{
setOutputFile("-oi", "index.dat");
setOutputFile("-on", "index.ndx");
excludeDataset("cfrac");
- runTest(CommandLine::create(cmdline));
+ runTest(CommandLine(cmdline));
}
TEST_F(SelectModuleTest, HandlesPDBOutputWithNonPDBInput)
setTrajectory("simple.gro");
includeDataset("occupancy");
setOutputFile("-ofpdb", "occupancy.pdb");
- runTest(CommandLine::create(cmdline));
+ runTest(CommandLine(cmdline));
}
TEST_F(SelectModuleTest, HandlesPDBOutputWithPDBInput)
setTrajectory("simple.gro");
includeDataset("occupancy");
setOutputFile("-ofpdb", "occupancy.pdb");
- runTest(CommandLine::create(cmdline));
+ runTest(CommandLine(cmdline));
}
TEST_F(SelectModuleTest, HandlesMaxPDBOutput)
{
const char *const cmdline[] = {
"select",
- "-select", "resname RA RD and y < 2.5",
+ "-select", "resname RA RD and y < 2.5", "resname RA RB",
"-pdbatoms", "maxsel"
};
setTopology("simple.pdb");
setTrajectory("simple.gro");
includeDataset("occupancy");
setOutputFile("-ofpdb", "occupancy.pdb");
- runTest(CommandLine::create(cmdline));
+ runTest(CommandLine(cmdline));
}
TEST_F(SelectModuleTest, HandlesSelectedPDBOutput)
{
const char *const cmdline[] = {
"select",
- "-select", "resname RA RD and y < 2.5",
+ "-select", "resname RA RD and y < 2.5", "resname RA RB",
"-pdbatoms", "selected"
};
setTopology("simple.pdb");
setTrajectory("simple.gro");
includeDataset("occupancy");
setOutputFile("-ofpdb", "occupancy.pdb");
- runTest(CommandLine::create(cmdline));
-}
-
-TEST_F(SelectModuleTest, HandlesDumpOption)
-{
- const char *const cmdline[] = {
- "select",
- "-select", "y < 2.5",
- "-dump"
- };
- setTopology("simple.gro");
- setOutputFile("-oi", "index.dat");
- includeDataset("index");
- runTest(CommandLine::create(cmdline));
+ runTest(CommandLine(cmdline));
}
TEST_F(SelectModuleTest, NormalizesSizes)
};
setTopology("simple.gro");
includeDataset("size");
- runTest(CommandLine::create(cmdline));
+ runTest(CommandLine(cmdline));
}
TEST_F(SelectModuleTest, WritesResidueNumbers)
};
setTopology("simple.gro");
includeDataset("index");
- runTest(CommandLine::create(cmdline));
+ runTest(CommandLine(cmdline));
}
TEST_F(SelectModuleTest, WritesResidueIndices)
};
setTopology("simple.gro");
includeDataset("index");
- runTest(CommandLine::create(cmdline));
+ runTest(CommandLine(cmdline));
}
} // namespace