Sort all includes in src/gromacs

[alexxy/gromacs.git] / src / gromacs / trajectoryanalysis / cmdlinerunner.h

diff --git a/src/gromacs/trajectoryanalysis/cmdlinerunner.h b/src/gromacs/trajectoryanalysis/cmdlinerunner.h
index 3bde55ee2c37f9e7057f26b48f2f19f3b573ee76..242a6299598ac69d784c4b832bb5f5245377ce11 100644 (file)
--- a/src/gromacs/trajectoryanalysis/cmdlinerunner.h
+++ b/src/gromacs/trajectoryanalysis/cmdlinerunner.h
@@ -1,10 +1,10 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by
- * David van der Spoel, Berk Hess, Erik Lindahl, and including many
- * others, as listed in the AUTHORS file in the top-level source
- * directory and at http://www.gromacs.org.
+ * Copyright (c) 2010,2011,2012,2013,2014, by the GROMACS development team, led by
+ * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
+ * and including many others, as listed in the AUTHORS file in the
+ * top-level source directory and at http://www.gromacs.org.
  *
  * GROMACS is free software; you can redistribute it and/or
  * modify it under the terms of the GNU Lesser General Public License
@@ -43,8 +43,8 @@
 #ifndef GMX_TRAJECTORYANALYSIS_CMDLINERUNNER_H
 #define GMX_TRAJECTORYANALYSIS_CMDLINERUNNER_H
 
-#include "analysismodule.h"
-#include "../utility/common.h"
+#include "gromacs/trajectoryanalysis/analysismodule.h"
+#include "gromacs/utility/common.h"
 
 namespace gmx
 {
@@ -150,12 +150,22 @@ class TrajectoryAnalysisCommandLineRunner
         ~TrajectoryAnalysisCommandLineRunner();
 
         /*! \brief
-         * Sets the default debugging level for selections.
+         * Sets whether default index groups are initialized.
          *
-         * This is intended only for use by internal debugging tools.
+         * This is intended only for internal unit testing purposes to avoid
+         * repeated, unnecessary initialization of the default groups, which
+         * can be expensive under, e.g., valgrind.
+         *
+         * Does not throw.
+         */
+        void setUseDefaultGroups(bool bUseDefaults);
+        /*! \brief
+         * Sets the default debugging level for selections.
          *
          * \param[in] debuglevel  Level of debugging verbosity.
          *
+         * This is intended only for use by internal debugging tools.
+         *
          * Does not throw.
          *
          * \see SelectionCollection::setDebugLevel()