Impl(TrajectoryAnalysisModule *module);
~Impl();
- void printHelp(const Options &options,
- const TrajectoryAnalysisSettings &settings,
+ void printHelp(const Options &options,
+ const TrajectoryAnalysisSettings &settings,
const TrajectoryAnalysisRunnerCommon &common);
bool parseOptions(TrajectoryAnalysisSettings *settings,
TrajectoryAnalysisRunnerCommon *common,
int *argc, char *argv[]);
TrajectoryAnalysisModule *module_;
- int debugLevel_;
- bool bPrintCopyright_;
+ int debugLevel_;
+ bool bPrintCopyright_;
};
void
TrajectoryAnalysisCommandLineRunner::Impl::printHelp(
- const Options &options,
- const TrajectoryAnalysisSettings &settings,
+ const Options &options,
+ const TrajectoryAnalysisSettings &settings,
const TrajectoryAnalysisRunnerCommon &common)
{
TrajectoryAnalysisRunnerCommon::HelpFlags flags = common.helpFlags();
SelectionCollection selections;
selections.setDebugLevel(impl_->debugLevel_);
- TrajectoryAnalysisSettings settings;
+ TrajectoryAnalysisSettings settings;
TrajectoryAnalysisRunnerCommon common(&settings);
if (!impl_->parseOptions(&settings, &common, &selections, &argc, argv))
t_pbc pbc;
t_pbc *ppbc = settings.hasPBC() ? &pbc : NULL;
- int nframes = 0;
- AnalysisDataParallelOptions dataOptions;
+ int nframes = 0;
+ AnalysisDataParallelOptions dataOptions;
TrajectoryAnalysisModuleDataPointer pdata(
module->startFrames(dataOptions, selections));
do