Sort all includes in src/gromacs

[alexxy/gromacs.git] / src / gromacs / options / optionsassigner.cpp

diff --git a/src/gromacs/options/optionsassigner.cpp b/src/gromacs/options/optionsassigner.cpp
index 4f117df4acff6dc701540aa536cb282762aab8d1..df3f1320d89da7ddb54996b610e7c5885d30a614 100644 (file)
--- a/src/gromacs/options/optionsassigner.cpp
+++ b/src/gromacs/options/optionsassigner.cpp
@@ -1,41 +1,47 @@
 /*
+ * This file is part of the GROMACS molecular simulation package.
  *
- *                This source code is part of
+ * Copyright (c) 2010,2011,2012,2013,2014, by the GROMACS development team, led by
+ * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
+ * and including many others, as listed in the AUTHORS file in the
+ * top-level source directory and at http://www.gromacs.org.
  *
- *                 G   R   O   M   A   C   S
+ * GROMACS is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU Lesser General Public License
+ * as published by the Free Software Foundation; either version 2.1
+ * of the License, or (at your option) any later version.
  *
- *          GROningen MAchine for Chemical Simulations
+ * GROMACS is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * Lesser General Public License for more details.
  *
- * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
- * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
- * Copyright (c) 2001-2009, The GROMACS development team,
- * check out http://www.gromacs.org for more information.
-
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * You should have received a copy of the GNU Lesser General Public
+ * License along with GROMACS; if not, see
+ * http://www.gnu.org/licenses, or write to the Free Software Foundation,
+ * Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA.
  *
- * If you want to redistribute modifications, please consider that
- * scientific software is very special. Version control is crucial -
- * bugs must be traceable. We will be happy to consider code for
- * inclusion in the official distribution, but derived work must not
- * be called official GROMACS. Details are found in the README & COPYING
- * files - if they are missing, get the official version at www.gromacs.org.
+ * If you want to redistribute modifications to GROMACS, please
+ * consider that scientific software is very special. Version
+ * control is crucial - bugs must be traceable. We will be happy to
+ * consider code for inclusion in the official distribution, but
+ * derived work must not be called official GROMACS. Details are found
+ * in the README & COPYING files - if they are missing, get the
+ * official version at http://www.gromacs.org.
  *
  * To help us fund GROMACS development, we humbly ask that you cite
- * the papers on the package - you can find them in the top README file.
- *
- * For more info, check our website at http://www.gromacs.org
+ * the research papers on the package. Check out http://www.gromacs.org.
  */
 /*! \internal \file
  * \brief
  * Implements gmx::OptionsAssigner.
  *
- * \author Teemu Murtola <teemu.murtola@cbr.su.se>
+ * \author Teemu Murtola <teemu.murtola@gmail.com>
  * \ingroup module_options
  */
-#include "gromacs/options/optionsassigner.h"
+#include "gmxpre.h"
+
+#include "optionsassigner.h"
 
 #include <deque>
 
@@ -118,17 +124,17 @@ OptionsAssigner::Impl::findOption(const char *name)
 {
     GMX_RELEASE_ASSERT(currentOption_ == NULL,
                        "Cannot search for another option while processing one");
-    AbstractOptionStorage *option = NULL;
-    Options *section = NULL;
-    Options *root = &currentSection();
-    Options *oldRoot = NULL;
-    int      upcount = 0;
-    std::deque<Options *> searchList;
+    AbstractOptionStorage *option  = NULL;
+    Options               *section = NULL;
+    Options               *root    = &currentSection();
+    Options               *oldRoot = NULL;
+    int                    upcount = 0;
+    std::deque<Options *>  searchList;
     searchList.push_back(root);
     while (option == NULL && !searchList.empty())
     {
         section = searchList.front();
-        option = section->impl_->findOption(name);
+        option  = section->impl_->findOption(name);
         if (option == NULL && bAcceptBooleanNoPrefix_)
         {
             if (name[0] == 'n' && name[1] == 'o')
@@ -225,16 +231,25 @@ void OptionsAssigner::startSubSection(const char *name)
 }
 
 void OptionsAssigner::startOption(const char *name)
+{
+    if (!tryStartOption(name))
+    {
+        GMX_THROW(InvalidInputError("Unknown option " + std::string(name)));
+    }
+}
+
+bool OptionsAssigner::tryStartOption(const char *name)
 {
     GMX_RELEASE_ASSERT(impl_->currentOption_ == NULL, "finishOption() not called");
     AbstractOptionStorage *option = impl_->findOption(name);
     if (option == NULL)
     {
-        GMX_THROW(InvalidInputError("Unknown option"));
+        return false;
     }
     option->startSet();
-    impl_->currentOption_ = option;
+    impl_->currentOption_     = option;
     impl_->currentValueCount_ = 0;
+    return true;
 }
 
 void OptionsAssigner::appendValue(const std::string &value)
@@ -249,7 +264,7 @@ void OptionsAssigner::finishOption()
 {
     AbstractOptionStorage *option = impl_->currentOption_;
     GMX_RELEASE_ASSERT(option != NULL, "startOption() not called");
-    bool bBoolReverseValue = false;
+    bool                   bBoolReverseValue = false;
     if (option->isBoolean())
     {
         if (impl_->currentValueCount_ == 0)
@@ -263,7 +278,7 @@ void OptionsAssigner::finishOption()
             bBoolReverseValue = true;
         }
     }
-    impl_->currentOption_ = NULL;
+    impl_->currentOption_  = NULL;
     impl_->reverseBoolean_ = false;
     option->finishSet();
     if (bBoolReverseValue)