Sort all includes in src/gromacs

[alexxy/gromacs.git] / src / gromacs / legacyheaders / nonbonded.h

diff --git a/src/gromacs/legacyheaders/nonbonded.h b/src/gromacs/legacyheaders/nonbonded.h
index b0f4ada51b8cdf9b163a681d12e0bce5dcc27b92..c985396e5914ac0067f9fb6e767ad7a4d0a40d59 100644 (file)
--- a/src/gromacs/legacyheaders/nonbonded.h
+++ b/src/gromacs/legacyheaders/nonbonded.h
@@ -1,46 +1,47 @@
 /*
+ * This file is part of the GROMACS molecular simulation package.
  *
- *                This source code is part of
- *
- *                 G   R   O   M   A   C   S
- *
- *          GROningen MAchine for Chemical Simulations
- *
- *                        VERSION 3.2.0
- * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
  * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
- * Copyright (c) 2001-2004, The GROMACS development team,
- * check out http://www.gromacs.org for more information.
-
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
+ * Copyright (c) 2001-2004, The GROMACS development team.
+ * Copyright (c) 2013,2014, by the GROMACS development team, led by
+ * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
+ * and including many others, as listed in the AUTHORS file in the
+ * top-level source directory and at http://www.gromacs.org.
+ *
+ * GROMACS is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU Lesser General Public License
+ * as published by the Free Software Foundation; either version 2.1
  * of the License, or (at your option) any later version.
  *
- * If you want to redistribute modifications, please consider that
- * scientific software is very special. Version control is crucial -
- * bugs must be traceable. We will be happy to consider code for
- * inclusion in the official distribution, but derived work must not
- * be called official GROMACS. Details are found in the README & COPYING
- * files - if they are missing, get the official version at www.gromacs.org.
+ * GROMACS is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * Lesser General Public License for more details.
  *
- * To help us fund GROMACS development, we humbly ask that you cite
- * the papers on the package - you can find them in the top README file.
+ * You should have received a copy of the GNU Lesser General Public
+ * License along with GROMACS; if not, see
+ * http://www.gnu.org/licenses, or write to the Free Software Foundation,
+ * Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA.
  *
- * For more info, check our website at http://www.gromacs.org
+ * If you want to redistribute modifications to GROMACS, please
+ * consider that scientific software is very special. Version
+ * control is crucial - bugs must be traceable. We will be happy to
+ * consider code for inclusion in the official distribution, but
+ * derived work must not be called official GROMACS. Details are found
+ * in the README & COPYING files - if they are missing, get the
+ * official version at http://www.gromacs.org.
  *
- * And Hey:
- * Gromacs Runs On Most of All Computer Systems
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the research papers on the package. Check out http://www.gromacs.org.
  */
 
 #ifndef _nonbonded_h
 #define _nonbonded_h
 
-#include "typedefs.h"
-#include "pbc.h"
-#include "network.h"
-#include "tgroup.h"
-#include "genborn.h"
+#include "gromacs/legacyheaders/genborn.h"
+#include "gromacs/legacyheaders/network.h"
+#include "gromacs/legacyheaders/tgroup.h"
+#include "gromacs/legacyheaders/typedefs.h"
 
 #ifdef __cplusplus
 extern "C" {
@@ -49,6 +50,8 @@ extern "C" {
 } /* fixes auto-indentation problems */
 #endif
 
+struct t_graph;
+struct t_pbc;
 
 
 void
@@ -61,15 +64,17 @@ gmx_nonbonded_setup(t_forcerec *   fr,
 
 void
 gmx_nonbonded_set_kernel_pointers(FILE *       fplog,
-                                  t_nblist *   nl);
+                                  t_nblist *   nl,
+                                  gmx_bool     bElecAndVdwSwitchDiffers);
 
 
 
 #define GMX_NONBONDED_DO_LR             (1<<0)
 #define GMX_NONBONDED_DO_FORCE          (1<<1)
-#define GMX_NONBONDED_DO_FOREIGNLAMBDA  (1<<2)
-#define GMX_NONBONDED_DO_POTENTIAL      (1<<3)
-#define GMX_NONBONDED_DO_SR             (1<<4)
+#define GMX_NONBONDED_DO_SHIFTFORCE     (1<<2)
+#define GMX_NONBONDED_DO_FOREIGNLAMBDA  (1<<3)
+#define GMX_NONBONDED_DO_POTENTIAL      (1<<4)
+#define GMX_NONBONDED_DO_SR             (1<<5)
 
 void
 do_nonbonded(t_forcerec *fr,
@@ -83,7 +88,8 @@ do_nonbonded(t_forcerec *fr,
  */
 real
 do_nonbonded_listed(int ftype, int nbonds, const t_iatom iatoms[], const t_iparams iparams[],
-                    const rvec x[], rvec f[], rvec fshift[], const t_pbc *pbc, const t_graph *g,
+                    const rvec x[], rvec f[], rvec fshift[],
+                    const struct t_pbc *pbc, const struct t_graph *g,
                     real *lambda, real *dvdl, const t_mdatoms *md, const t_forcerec *fr,
                     gmx_grppairener_t *grppener, int *global_atom_index);