Remove unnecessary config.h includes

[alexxy/gromacs.git] / src / gromacs / gmxana / gmx_anaeig.c

diff --git a/src/gromacs/gmxana/gmx_anaeig.c b/src/gromacs/gmxana/gmx_anaeig.c
index eb1d28e6b685227f9c98e1fae6363c628d982c8f..dde9815f2a3322cfbfca087f19ba341c43d3a121 100644 (file)
--- a/src/gromacs/gmxana/gmx_anaeig.c
+++ b/src/gromacs/gmxana/gmx_anaeig.c
@@ -34,16 +34,16 @@
  * To help us fund GROMACS development, we humbly ask that you cite
  * the research papers on the package. Check out http://www.gromacs.org.
  */
-#include "config.h"
+#include "gmxpre.h"
 
 #include <math.h>
 #include <stdlib.h>
 #include <string.h>
 
 #include "gromacs/commandline/pargs.h"
-#include "typedefs.h"
+#include "gromacs/legacyheaders/typedefs.h"
 #include "gromacs/utility/smalloc.h"
-#include "macros.h"
+#include "gromacs/legacyheaders/macros.h"
 #include "gromacs/utility/fatalerror.h"
 #include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
@@ -54,9 +54,9 @@
 #include "gromacs/fileio/trxio.h"
 #include "gromacs/fileio/matio.h"
 #include "gromacs/fileio/xvgr.h"
-#include "viewit.h"
+#include "gromacs/legacyheaders/viewit.h"
 #include "gromacs/pbcutil/rmpbc.h"
-#include "txtdump.h"
+#include "gromacs/legacyheaders/txtdump.h"
 #include "eigio.h"
 #include "gromacs/math/units.h"
 #include "gmx_ana.h"
@@ -646,7 +646,7 @@ static void project(const char *trajfile, t_topology *top, int ePBC, matrix topb
         for (v = 0; v < noutvec; v++)
         {
             sprintf(str, "vec %d", eignr[outvec[v]]+1);
-            ylabel[v] = strdup(str);
+            ylabel[v] = gmx_strdup(str);
         }
         sprintf(str, "projection on eigenvectors (%s)", proj_unit);
         write_xvgr_graphs(projfile, noutvec, 1, str, NULL, output_env_get_xvgr_tlabel(oenv),
@@ -712,8 +712,8 @@ static void project(const char *trajfile, t_topology *top, int ePBC, matrix topb
         init_t_atoms(&atoms, nframes, FALSE);
         snew(x, nframes);
         snew(b, nframes);
-        atnm  = strdup("C");
-        resnm = strdup("PRJ");
+        atnm  = gmx_strdup("C");
+        resnm = gmx_strdup("PRJ");
 
         if (nframes > 10000)
         {
@@ -878,7 +878,7 @@ static void components(const char *outfile, int natoms,
     {
         v = outvec[g];
         sprintf(str, "vec %d", eignr[v]+1);
-        ylabel[g] = strdup(str);
+        ylabel[g] = gmx_strdup(str);
         snew(y[g], 4);
         for (s = 0; s < 4; s++)
         {
@@ -935,7 +935,7 @@ static void rmsf(const char *outfile, int natoms, real *sqrtm,
             gmx_fatal(FARGS, "Selected vector %d is larger than the number of eigenvalues (%d)", eignr[v]+1, neig);
         }
         sprintf(str, "vec %d", eignr[v]+1);
-        ylabel[g] = strdup(str);
+        ylabel[g] = gmx_strdup(str);
         snew(y[g], natoms);
         for (i = 0; i < natoms; i++)
         {
@@ -1102,7 +1102,7 @@ int gmx_anaeig(int argc, char *argv[])
 #define NFILE asize(fnm)
 
     if (!parse_common_args(&argc, argv,
-                           PCA_CAN_TIME | PCA_TIME_UNIT | PCA_CAN_VIEW | PCA_BE_NICE,
+                           PCA_CAN_TIME | PCA_TIME_UNIT | PCA_CAN_VIEW,
                            NFILE, fnm, NPA, pa, asize(desc), desc, 0, NULL, &oenv))
     {
         return 0;