* This file is part of the GROMACS molecular simulation package.
*
* Copyright (c) 1991-2000, University of Groningen, The Netherlands.
- * Copyright (c) 2001-2004, The GROMACS development team,
- * Copyright (c) 2013, by the GROMACS development team, led by
+ * Copyright (c) 2001-2004, The GROMACS development team.
+ * Copyright (c) 2013,2014, by the GROMACS development team, led by
* Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
* and including many others, as listed in the AUTHORS file in the
* top-level source directory and at http://www.gromacs.org.
#define GMX_FILEIO_GMXFIO_H
#include <stdio.h>
-#include "../legacyheaders/typedefs.h"
-#include "futil.h"
+
+#include "gromacs/math/vectypes.h"
+#include "gromacs/utility/cstringutil.h"
+#include "gromacs/utility/futil.h"
+#include "gromacs/utility/real.h"
#ifdef __cplusplus
extern "C" {
/* Enumerated for data types in files */
enum {
- eioREAL, eioFLOAT, eioDOUBLE, eioINT, eioGMX_LARGE_INT,
+ eioREAL, eioFLOAT, eioDOUBLE, eioINT, eioINT64,
eioUCHAR, eioNUCHAR, eioUSHORT,
eioRVEC, eioNRVEC, eioIVEC, eioSTRING, eioNR
};
typedef struct t_fileio t_fileio;
-extern const char *itemstr[eitemNR];
-extern const char *comment_str[eitemNR];
-
/* NOTE ABOUT THREAD SAFETY:
The functions are all thread-safe, provided that two threads don't
t_fileio *gmx_fio_open(const char *fn, const char *mode);
/* Open a new file for reading or writing.
* The file type will be deduced from the file name.
- * If fn is NULL, stdin / stdout will be used for Ascii I/O (TPA type)
- * mode may be "r", "w", or "a". You should append a "b" to the mode
- * if you are writing a binary file, but the routine will also
- * doublecheck it and try to do it if you forgot. This has no effect on
- * unix, but is important on windows.
*/
int gmx_fio_close(t_fileio *fp);
***************************************************/
void gmx_fio_rewind(t_fileio *fio);
-/* Rewind the tpa file in fio */
+/* Rewind the file in fio */
int gmx_fio_flush(t_fileio *fio);
/* Flush the fio, returns 0 on success */
}
gmx_file_position_t;
-
-int gmx_fio_check_file_position(t_fileio *fio);
-/* Check if the file position is out of the range of off_t.
- * The result is stored along with the other file data of fio.
- */
-
int gmx_fio_get_output_file_positions(gmx_file_position_t ** outputfiles,
int *nfiles );
/* Return the name and file pointer positions for all currently open
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_reade_int(t_fileio *fio, int *item,
const char *desc, const char *srcfile, int line);
-gmx_bool gmx_fio_reade_gmx_large_int(t_fileio *fio, gmx_large_int_t *item,
- const char *desc, const char *srcfile, int line);
+gmx_bool gmx_fio_reade_int64(t_fileio *fio, gmx_int64_t *item,
+ const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_reade_uchar(t_fileio *fio, unsigned char *item,
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_reade_ushort(t_fileio *fio, unsigned short *item,
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_writee_int(t_fileio *fio, int item,
const char *desc, const char *srcfile, int line);
-gmx_bool gmx_fio_writee_gmx_large_int(t_fileio *fio, gmx_large_int_t item,
- const char *desc, const char *srcfile, int line);
+gmx_bool gmx_fio_writee_int64(t_fileio *fio, gmx_int64_t item,
+ const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_writee_uchar(t_fileio *fio, unsigned char item,
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_writee_ushort(t_fileio *fio, unsigned short item,
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_doe_int(t_fileio *fio, int *item,
const char *desc, const char *srcfile, int line);
-gmx_bool gmx_fio_doe_gmx_large_int(t_fileio *fio, gmx_large_int_t *item,
- const char *desc, const char *srcfile, int line);
+gmx_bool gmx_fio_doe_int64(t_fileio *fio, gmx_int64_t *item,
+ const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_doe_uchar(t_fileio *fio, unsigned char *item,
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_doe_ushort(t_fileio *fio, unsigned short *item,
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_nreade_int(t_fileio *fio, int *item, int n,
const char *desc, const char *srcfile, int line);
-gmx_bool gmx_fio_nreade_gmx_large_int(t_fileio *fio, gmx_large_int_t *item, int n,
- const char *desc, const char *srcfile,
- int line);
+gmx_bool gmx_fio_nreade_int64(t_fileio *fio, gmx_int64_t *item, int n,
+ const char *desc, const char *srcfile,
+ int line);
gmx_bool gmx_fio_nreade_uchar(t_fileio *fio, unsigned char *item, int n,
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_nreade_ushort(t_fileio *fio, unsigned short *item, int n,
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_nwritee_int(t_fileio *fio, const int *item, int n,
const char *desc, const char *srcfile, int line);
-gmx_bool gmx_fio_nwritee_gmx_large_int(t_fileio *fio,
- const gmx_large_int_t *item, int n,
- const char *desc, const char *srcfile,
- int line);
+gmx_bool gmx_fio_nwritee_int64(t_fileio *fio,
+ const gmx_int64_t *item, int n,
+ const char *desc, const char *srcfile,
+ int line);
gmx_bool gmx_fio_nwritee_uchar(t_fileio *fio, const unsigned char *item, int n,
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_nwritee_ushort(t_fileio *fio, const unsigned short *item, int n,
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_ndoe_int(t_fileio *fio, int *item, int n,
const char *desc, const char *srcfile, int line);
-gmx_bool gmx_fio_ndoe_gmx_large_int(t_fileio *fio, gmx_large_int_t *item, int n,
- const char *desc, const char *srcfile,
- int line);
+gmx_bool gmx_fio_ndoe_int64(t_fileio *fio, gmx_int64_t *item, int n,
+ const char *desc, const char *srcfile,
+ int line);
gmx_bool gmx_fio_ndoe_uchar(t_fileio *fio, unsigned char *item, int n,
const char *desc, const char *srcfile, int line);
gmx_bool gmx_fio_ndoe_ushort(t_fileio *fio, unsigned short *item, int n,
#define gmx_fio_read_float(fio, item) gmx_fio_reade_float(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_read_double(fio, item) gmx_fio_reade_double(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_read_int(fio, item) gmx_fio_reade_int(fio, &item, (#item), __FILE__, __LINE__)
-#define gmx_fio_read_gmx_large_int(fio, item) gmx_fio_reade_gmx_large_int(fio, &item, (#item), __FILE__, __LINE__)
+#define gmx_fio_read_int64(fio, item) gmx_fio_reade_int64(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_read_uchar(fio, item) gmx_fio_reade_uchar(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_read_ushort(fio, item) gmx_fio_reade_ushort(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_read_rvec(fio, item) gmx_fio_reade_rvec(fio, item, (#item), __FILE__, __LINE__)
#define gmx_fio_write_float(fio, item) gmx_fio_writee_float(fio, item, (#item), __FILE__, __LINE__)
#define gmx_fio_write_double(fio, item) gmx_fio_writee_double(fio, item, (#item), __FILE__, __LINE__)
#define gmx_fio_write_int(fio, item) gmx_fio_writee_int(fio, item, (#item), __FILE__, __LINE__)
-#define gmx_fio_write_gmx_large_int(fio, item) gmx_fio_writee_gmx_large_int(fio, item, (#item), __FILE__, __LINE__)
+#define gmx_fio_write_int64(fio, item) gmx_fio_writee_int64(fio, item, (#item), __FILE__, __LINE__)
#define gmx_fio_write_uchar(fio, item) gmx_fio_writee_uchar(fio, item, (#item), __FILE__, __LINE__)
#define gmx_fio_write_ushort(fio, item) gmx_fio_writee_ushort(fio, item, (#item), __FILE__, __LINE__)
#define gmx_fio_write_rvec(fio, item) gmx_fio_writee_rvec(fio, item, (#item), __FILE__, __LINE__)
#define gmx_fio_do_real(fio, item) gmx_fio_doe_real(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_do_float(fio, item) gmx_fio_doe_float(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_do_double(fio, item) gmx_fio_doe_double(fio, &item, (#item), __FILE__, __LINE__)
-#define gmx_fio_do_gmx_bool(fio, item) gmx_fio_doe_gmx_bool(fio, &item, (#item), __FILE__, __LINE__)
+#define gmx_fio_do_gmx_bool(fio, item) gmx_fio_doe_gmx_bool(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_do_int(fio, item) gmx_fio_doe_int(fio, &item, (#item), __FILE__, __LINE__)
-#define gmx_fio_do_gmx_large_int(fio, item) gmx_fio_doe_gmx_large_int(fio, &item, (#item), __FILE__, __LINE__)
+#define gmx_fio_do_int64(fio, item) gmx_fio_doe_int64(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_do_uchar(fio, item) gmx_fio_doe_uchar(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_do_ushort(fio, item) gmx_fio_doe_ushort(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_do_rvec(fio, item) gmx_fio_doe_rvec(fio, &item, (#item), __FILE__, __LINE__)
#define gmx_fio_nread_float(fio, item, n) gmx_fio_nreade_float(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_nread_double(fio, item, n) gmx_fio_nreade_double(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_nread_int(fio, item, n) gmx_fio_nreade_int(fio, item, n, (#item), __FILE__, __LINE__)
-#define gmx_fio_nread_gmx_large_int(fio, item, n) gmx_fio_nreade_gmx_large_int(fio, item, n, (#item), __FILE__, __LINE__)
+#define gmx_fio_nread_int64(fio, item, n) gmx_fio_nreade_int64(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_nread_uchar(fio, item, n) gmx_fio_nreade_uchar(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_nread_ushort(fio, item, n) gmx_fio_nreade_ushort(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_nread_rvec(fio, item, n) gmx_fio_nreade_rvec(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_nwrite_float(fio, item, n) gmx_fio_nwritee_float(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_nwrite_double(fio, item, n) gmx_fio_nwritee_double(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_nwrite_int(fio, item, n) gmx_fio_nwritee_int(fio, item, n, (#item), __FILE__, __LINE__)
-#define gmx_fio_nwrite_gmx_large_int(fio, item, n) gmx_fio_nwritee_gmx_large_int(fio, item, n, (#item), __FILE__, __LINE__)
+#define gmx_fio_nwrite_int64(fio, item, n) gmx_fio_nwritee_int64(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_nwrite_uchar(fio, item, n) gmx_fio_nwritee_uchar(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_nwrite_ushort(fio, item, n) gmx_fio_nwritee_ushort(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_nwrite_rvec(fio, item, n) gmx_fio_nwritee_rvec(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_ndo_real(fio, item, n) gmx_fio_ndoe_real(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_ndo_float(fio, item, n) gmx_fio_ndoe_float(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_ndo_double(fio, item, n) gmx_fio_ndoe_double(fio, item, n, (#item), __FILE__, __LINE__)
-#define gmx_fio_ndo_gmx_bool(fio, item, n) gmx_fio_ndoe_gmx_bool(fio, item, n, (#item), __FILE__, __LINE__)
+#define gmx_fio_ndo_gmx_bool(fio, item, n) gmx_fio_ndoe_gmx_bool(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_ndo_int(fio, item, n) gmx_fio_ndoe_int(fio, item, n, (#item), __FILE__, __LINE__)
-#define gmx_fio_ndo_gmx_large_int(fio, item, n) gmx_fio_ndoe_gmx_large_int(fio, item, n, (#item), __FILE__, __LINE__)
+#define gmx_fio_ndo_int64(fio, item, n) gmx_fio_ndoe_int64(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_ndo_uchar(fio, item, n) gmx_fio_ndoe_uchar(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_ndo_ushort(fio, item, n) gmx_fio_ndoe_ushort(fio, item, n, (#item), __FILE__, __LINE__)
#define gmx_fio_ndo_rvec(fio, item, n) gmx_fio_ndoe_rvec(fio, item, n, (#item), __FILE__, __LINE__)
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