| File: | gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c |
| Location: | line 873, column 5 |
| Description: | Value stored to 'gid' is never read |
| 1 | /* |
| 2 | * This file is part of the GROMACS molecular simulation package. |
| 3 | * |
| 4 | * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by |
| 5 | * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, |
| 6 | * and including many others, as listed in the AUTHORS file in the |
| 7 | * top-level source directory and at http://www.gromacs.org. |
| 8 | * |
| 9 | * GROMACS is free software; you can redistribute it and/or |
| 10 | * modify it under the terms of the GNU Lesser General Public License |
| 11 | * as published by the Free Software Foundation; either version 2.1 |
| 12 | * of the License, or (at your option) any later version. |
| 13 | * |
| 14 | * GROMACS is distributed in the hope that it will be useful, |
| 15 | * but WITHOUT ANY WARRANTY; without even the implied warranty of |
| 16 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
| 17 | * Lesser General Public License for more details. |
| 18 | * |
| 19 | * You should have received a copy of the GNU Lesser General Public |
| 20 | * License along with GROMACS; if not, see |
| 21 | * http://www.gnu.org/licenses, or write to the Free Software Foundation, |
| 22 | * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. |
| 23 | * |
| 24 | * If you want to redistribute modifications to GROMACS, please |
| 25 | * consider that scientific software is very special. Version |
| 26 | * control is crucial - bugs must be traceable. We will be happy to |
| 27 | * consider code for inclusion in the official distribution, but |
| 28 | * derived work must not be called official GROMACS. Details are found |
| 29 | * in the README & COPYING files - if they are missing, get the |
| 30 | * official version at http://www.gromacs.org. |
| 31 | * |
| 32 | * To help us fund GROMACS development, we humbly ask that you cite |
| 33 | * the research papers on the package. Check out http://www.gromacs.org. |
| 34 | */ |
| 35 | /* |
| 36 | * Note: this file was generated by the GROMACS c kernel generator. |
| 37 | */ |
| 38 | #ifdef HAVE_CONFIG_H1 |
| 39 | #include <config.h> |
| 40 | #endif |
| 41 | |
| 42 | #include <math.h> |
| 43 | |
| 44 | #include "../nb_kernel.h" |
| 45 | #include "types/simple.h" |
| 46 | #include "gromacs/math/vec.h" |
| 47 | #include "nrnb.h" |
| 48 | |
| 49 | /* |
| 50 | * Gromacs nonbonded kernel: nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_VF_c |
| 51 | * Electrostatics interaction: Ewald |
| 52 | * VdW interaction: LennardJones |
| 53 | * Geometry: Water3-Water3 |
| 54 | * Calculate force/pot: PotentialAndForce |
| 55 | */ |
| 56 | void |
| 57 | nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_VF_c |
| 58 | (t_nblist * gmx_restrict__restrict nlist, |
| 59 | rvec * gmx_restrict__restrict xx, |
| 60 | rvec * gmx_restrict__restrict ff, |
| 61 | t_forcerec * gmx_restrict__restrict fr, |
| 62 | t_mdatoms * gmx_restrict__restrict mdatoms, |
| 63 | nb_kernel_data_t gmx_unused__attribute__ ((unused)) * gmx_restrict__restrict kernel_data, |
| 64 | t_nrnb * gmx_restrict__restrict nrnb) |
| 65 | { |
| 66 | int i_shift_offset,i_coord_offset,j_coord_offset; |
| 67 | int j_index_start,j_index_end; |
| 68 | int nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter; |
| 69 | real shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2; |
| 70 | int *iinr,*jindex,*jjnr,*shiftidx,*gid; |
| 71 | real *shiftvec,*fshift,*x,*f; |
| 72 | int vdwioffset0; |
| 73 | real ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0; |
| 74 | int vdwioffset1; |
| 75 | real ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1; |
| 76 | int vdwioffset2; |
| 77 | real ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2; |
| 78 | int vdwjidx0; |
| 79 | real jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0; |
| 80 | int vdwjidx1; |
| 81 | real jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1; |
| 82 | int vdwjidx2; |
| 83 | real jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2; |
| 84 | real dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00; |
| 85 | real dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01,cexp1_01,cexp2_01; |
| 86 | real dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02,cexp1_02,cexp2_02; |
| 87 | real dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10,cexp1_10,cexp2_10; |
| 88 | real dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11,cexp1_11,cexp2_11; |
| 89 | real dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12,cexp1_12,cexp2_12; |
| 90 | real dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20,cexp1_20,cexp2_20; |
| 91 | real dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21,cexp1_21,cexp2_21; |
| 92 | real dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22,cexp1_22,cexp2_22; |
| 93 | real velec,felec,velecsum,facel,crf,krf,krf2; |
| 94 | real *charge; |
| 95 | int nvdwtype; |
| 96 | real rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6; |
| 97 | int *vdwtype; |
| 98 | real *vdwparam; |
| 99 | int ewitab; |
| 100 | real ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace; |
| 101 | real *ewtab; |
| 102 | real rswitch,swV3,swV4,swV5,swF2,swF3,swF4,d,d2,sw,dsw; |
| 103 | |
| 104 | x = xx[0]; |
| 105 | f = ff[0]; |
| 106 | |
| 107 | nri = nlist->nri; |
| 108 | iinr = nlist->iinr; |
| 109 | jindex = nlist->jindex; |
| 110 | jjnr = nlist->jjnr; |
| 111 | shiftidx = nlist->shift; |
| 112 | gid = nlist->gid; |
| 113 | shiftvec = fr->shift_vec[0]; |
| 114 | fshift = fr->fshift[0]; |
| 115 | facel = fr->epsfac; |
| 116 | charge = mdatoms->chargeA; |
| 117 | nvdwtype = fr->ntype; |
| 118 | vdwparam = fr->nbfp; |
| 119 | vdwtype = mdatoms->typeA; |
| 120 | |
| 121 | sh_ewald = fr->ic->sh_ewald; |
| 122 | ewtab = fr->ic->tabq_coul_FDV0; |
| 123 | ewtabscale = fr->ic->tabq_scale; |
| 124 | ewtabhalfspace = 0.5/ewtabscale; |
| 125 | |
| 126 | /* Setup water-specific parameters */ |
| 127 | inr = nlist->iinr[0]; |
| 128 | iq0 = facel*charge[inr+0]; |
| 129 | iq1 = facel*charge[inr+1]; |
| 130 | iq2 = facel*charge[inr+2]; |
| 131 | vdwioffset0 = 2*nvdwtype*vdwtype[inr+0]; |
| 132 | |
| 133 | jq0 = charge[inr+0]; |
| 134 | jq1 = charge[inr+1]; |
| 135 | jq2 = charge[inr+2]; |
| 136 | vdwjidx0 = 2*vdwtype[inr+0]; |
| 137 | qq00 = iq0*jq0; |
| 138 | c6_00 = vdwparam[vdwioffset0+vdwjidx0]; |
| 139 | c12_00 = vdwparam[vdwioffset0+vdwjidx0+1]; |
| 140 | qq01 = iq0*jq1; |
| 141 | qq02 = iq0*jq2; |
| 142 | qq10 = iq1*jq0; |
| 143 | qq11 = iq1*jq1; |
| 144 | qq12 = iq1*jq2; |
| 145 | qq20 = iq2*jq0; |
| 146 | qq21 = iq2*jq1; |
| 147 | qq22 = iq2*jq2; |
| 148 | |
| 149 | /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */ |
| 150 | rcutoff = fr->rcoulomb; |
| 151 | rcutoff2 = rcutoff*rcutoff; |
| 152 | |
| 153 | rswitch = fr->rcoulomb_switch; |
| 154 | /* Setup switch parameters */ |
| 155 | d = rcutoff-rswitch; |
| 156 | swV3 = -10.0/(d*d*d); |
| 157 | swV4 = 15.0/(d*d*d*d); |
| 158 | swV5 = -6.0/(d*d*d*d*d); |
| 159 | swF2 = -30.0/(d*d*d); |
| 160 | swF3 = 60.0/(d*d*d*d); |
| 161 | swF4 = -30.0/(d*d*d*d*d); |
| 162 | |
| 163 | outeriter = 0; |
| 164 | inneriter = 0; |
| 165 | |
| 166 | /* Start outer loop over neighborlists */ |
| 167 | for(iidx=0; iidx<nri; iidx++) |
| 168 | { |
| 169 | /* Load shift vector for this list */ |
| 170 | i_shift_offset = DIM3*shiftidx[iidx]; |
| 171 | shX = shiftvec[i_shift_offset+XX0]; |
| 172 | shY = shiftvec[i_shift_offset+YY1]; |
| 173 | shZ = shiftvec[i_shift_offset+ZZ2]; |
| 174 | |
| 175 | /* Load limits for loop over neighbors */ |
| 176 | j_index_start = jindex[iidx]; |
| 177 | j_index_end = jindex[iidx+1]; |
| 178 | |
| 179 | /* Get outer coordinate index */ |
| 180 | inr = iinr[iidx]; |
| 181 | i_coord_offset = DIM3*inr; |
| 182 | |
| 183 | /* Load i particle coords and add shift vector */ |
| 184 | ix0 = shX + x[i_coord_offset+DIM3*0+XX0]; |
| 185 | iy0 = shY + x[i_coord_offset+DIM3*0+YY1]; |
| 186 | iz0 = shZ + x[i_coord_offset+DIM3*0+ZZ2]; |
| 187 | ix1 = shX + x[i_coord_offset+DIM3*1+XX0]; |
| 188 | iy1 = shY + x[i_coord_offset+DIM3*1+YY1]; |
| 189 | iz1 = shZ + x[i_coord_offset+DIM3*1+ZZ2]; |
| 190 | ix2 = shX + x[i_coord_offset+DIM3*2+XX0]; |
| 191 | iy2 = shY + x[i_coord_offset+DIM3*2+YY1]; |
| 192 | iz2 = shZ + x[i_coord_offset+DIM3*2+ZZ2]; |
| 193 | |
| 194 | fix0 = 0.0; |
| 195 | fiy0 = 0.0; |
| 196 | fiz0 = 0.0; |
| 197 | fix1 = 0.0; |
| 198 | fiy1 = 0.0; |
| 199 | fiz1 = 0.0; |
| 200 | fix2 = 0.0; |
| 201 | fiy2 = 0.0; |
| 202 | fiz2 = 0.0; |
| 203 | |
| 204 | /* Reset potential sums */ |
| 205 | velecsum = 0.0; |
| 206 | vvdwsum = 0.0; |
| 207 | |
| 208 | /* Start inner kernel loop */ |
| 209 | for(jidx=j_index_start; jidx<j_index_end; jidx++) |
| 210 | { |
| 211 | /* Get j neighbor index, and coordinate index */ |
| 212 | jnr = jjnr[jidx]; |
| 213 | j_coord_offset = DIM3*jnr; |
| 214 | |
| 215 | /* load j atom coordinates */ |
| 216 | jx0 = x[j_coord_offset+DIM3*0+XX0]; |
| 217 | jy0 = x[j_coord_offset+DIM3*0+YY1]; |
| 218 | jz0 = x[j_coord_offset+DIM3*0+ZZ2]; |
| 219 | jx1 = x[j_coord_offset+DIM3*1+XX0]; |
| 220 | jy1 = x[j_coord_offset+DIM3*1+YY1]; |
| 221 | jz1 = x[j_coord_offset+DIM3*1+ZZ2]; |
| 222 | jx2 = x[j_coord_offset+DIM3*2+XX0]; |
| 223 | jy2 = x[j_coord_offset+DIM3*2+YY1]; |
| 224 | jz2 = x[j_coord_offset+DIM3*2+ZZ2]; |
| 225 | |
| 226 | /* Calculate displacement vector */ |
| 227 | dx00 = ix0 - jx0; |
| 228 | dy00 = iy0 - jy0; |
| 229 | dz00 = iz0 - jz0; |
| 230 | dx01 = ix0 - jx1; |
| 231 | dy01 = iy0 - jy1; |
| 232 | dz01 = iz0 - jz1; |
| 233 | dx02 = ix0 - jx2; |
| 234 | dy02 = iy0 - jy2; |
| 235 | dz02 = iz0 - jz2; |
| 236 | dx10 = ix1 - jx0; |
| 237 | dy10 = iy1 - jy0; |
| 238 | dz10 = iz1 - jz0; |
| 239 | dx11 = ix1 - jx1; |
| 240 | dy11 = iy1 - jy1; |
| 241 | dz11 = iz1 - jz1; |
| 242 | dx12 = ix1 - jx2; |
| 243 | dy12 = iy1 - jy2; |
| 244 | dz12 = iz1 - jz2; |
| 245 | dx20 = ix2 - jx0; |
| 246 | dy20 = iy2 - jy0; |
| 247 | dz20 = iz2 - jz0; |
| 248 | dx21 = ix2 - jx1; |
| 249 | dy21 = iy2 - jy1; |
| 250 | dz21 = iz2 - jz1; |
| 251 | dx22 = ix2 - jx2; |
| 252 | dy22 = iy2 - jy2; |
| 253 | dz22 = iz2 - jz2; |
| 254 | |
| 255 | /* Calculate squared distance and things based on it */ |
| 256 | rsq00 = dx00*dx00+dy00*dy00+dz00*dz00; |
| 257 | rsq01 = dx01*dx01+dy01*dy01+dz01*dz01; |
| 258 | rsq02 = dx02*dx02+dy02*dy02+dz02*dz02; |
| 259 | rsq10 = dx10*dx10+dy10*dy10+dz10*dz10; |
| 260 | rsq11 = dx11*dx11+dy11*dy11+dz11*dz11; |
| 261 | rsq12 = dx12*dx12+dy12*dy12+dz12*dz12; |
| 262 | rsq20 = dx20*dx20+dy20*dy20+dz20*dz20; |
| 263 | rsq21 = dx21*dx21+dy21*dy21+dz21*dz21; |
| 264 | rsq22 = dx22*dx22+dy22*dy22+dz22*dz22; |
| 265 | |
| 266 | rinv00 = gmx_invsqrt(rsq00)gmx_software_invsqrt(rsq00); |
| 267 | rinv01 = gmx_invsqrt(rsq01)gmx_software_invsqrt(rsq01); |
| 268 | rinv02 = gmx_invsqrt(rsq02)gmx_software_invsqrt(rsq02); |
| 269 | rinv10 = gmx_invsqrt(rsq10)gmx_software_invsqrt(rsq10); |
| 270 | rinv11 = gmx_invsqrt(rsq11)gmx_software_invsqrt(rsq11); |
| 271 | rinv12 = gmx_invsqrt(rsq12)gmx_software_invsqrt(rsq12); |
| 272 | rinv20 = gmx_invsqrt(rsq20)gmx_software_invsqrt(rsq20); |
| 273 | rinv21 = gmx_invsqrt(rsq21)gmx_software_invsqrt(rsq21); |
| 274 | rinv22 = gmx_invsqrt(rsq22)gmx_software_invsqrt(rsq22); |
| 275 | |
| 276 | rinvsq00 = rinv00*rinv00; |
| 277 | rinvsq01 = rinv01*rinv01; |
| 278 | rinvsq02 = rinv02*rinv02; |
| 279 | rinvsq10 = rinv10*rinv10; |
| 280 | rinvsq11 = rinv11*rinv11; |
| 281 | rinvsq12 = rinv12*rinv12; |
| 282 | rinvsq20 = rinv20*rinv20; |
| 283 | rinvsq21 = rinv21*rinv21; |
| 284 | rinvsq22 = rinv22*rinv22; |
| 285 | |
| 286 | /************************** |
| 287 | * CALCULATE INTERACTIONS * |
| 288 | **************************/ |
| 289 | |
| 290 | if (rsq00<rcutoff2) |
| 291 | { |
| 292 | |
| 293 | r00 = rsq00*rinv00; |
| 294 | |
| 295 | /* EWALD ELECTROSTATICS */ |
| 296 | |
| 297 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 298 | ewrt = r00*ewtabscale; |
| 299 | ewitab = ewrt; |
| 300 | eweps = ewrt-ewitab; |
| 301 | ewitab = 4*ewitab; |
| 302 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 303 | velec = qq00*(rinv00-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 304 | felec = qq00*rinv00*(rinvsq00-felec); |
| 305 | |
| 306 | /* LENNARD-JONES DISPERSION/REPULSION */ |
| 307 | |
| 308 | rinvsix = rinvsq00*rinvsq00*rinvsq00; |
| 309 | vvdw6 = c6_00*rinvsix; |
| 310 | vvdw12 = c12_00*rinvsix*rinvsix; |
| 311 | vvdw = vvdw12*(1.0/12.0) - vvdw6*(1.0/6.0); |
| 312 | fvdw = (vvdw12-vvdw6)*rinvsq00; |
| 313 | |
| 314 | d = r00-rswitch; |
| 315 | d = (d>0.0) ? d : 0.0; |
| 316 | d2 = d*d; |
| 317 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 318 | |
| 319 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 320 | |
| 321 | /* Evaluate switch function */ |
| 322 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 323 | felec = felec*sw - rinv00*velec*dsw; |
| 324 | fvdw = fvdw*sw - rinv00*vvdw*dsw; |
| 325 | velec *= sw; |
| 326 | vvdw *= sw; |
| 327 | |
| 328 | /* Update potential sums from outer loop */ |
| 329 | velecsum += velec; |
| 330 | vvdwsum += vvdw; |
| 331 | |
| 332 | fscal = felec+fvdw; |
| 333 | |
| 334 | /* Calculate temporary vectorial force */ |
| 335 | tx = fscal*dx00; |
| 336 | ty = fscal*dy00; |
| 337 | tz = fscal*dz00; |
| 338 | |
| 339 | /* Update vectorial force */ |
| 340 | fix0 += tx; |
| 341 | fiy0 += ty; |
| 342 | fiz0 += tz; |
| 343 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
| 344 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
| 345 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
| 346 | |
| 347 | } |
| 348 | |
| 349 | /************************** |
| 350 | * CALCULATE INTERACTIONS * |
| 351 | **************************/ |
| 352 | |
| 353 | if (rsq01<rcutoff2) |
| 354 | { |
| 355 | |
| 356 | r01 = rsq01*rinv01; |
| 357 | |
| 358 | /* EWALD ELECTROSTATICS */ |
| 359 | |
| 360 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 361 | ewrt = r01*ewtabscale; |
| 362 | ewitab = ewrt; |
| 363 | eweps = ewrt-ewitab; |
| 364 | ewitab = 4*ewitab; |
| 365 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 366 | velec = qq01*(rinv01-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 367 | felec = qq01*rinv01*(rinvsq01-felec); |
| 368 | |
| 369 | d = r01-rswitch; |
| 370 | d = (d>0.0) ? d : 0.0; |
| 371 | d2 = d*d; |
| 372 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 373 | |
| 374 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 375 | |
| 376 | /* Evaluate switch function */ |
| 377 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 378 | felec = felec*sw - rinv01*velec*dsw; |
| 379 | velec *= sw; |
| 380 | |
| 381 | /* Update potential sums from outer loop */ |
| 382 | velecsum += velec; |
| 383 | |
| 384 | fscal = felec; |
| 385 | |
| 386 | /* Calculate temporary vectorial force */ |
| 387 | tx = fscal*dx01; |
| 388 | ty = fscal*dy01; |
| 389 | tz = fscal*dz01; |
| 390 | |
| 391 | /* Update vectorial force */ |
| 392 | fix0 += tx; |
| 393 | fiy0 += ty; |
| 394 | fiz0 += tz; |
| 395 | f[j_coord_offset+DIM3*1+XX0] -= tx; |
| 396 | f[j_coord_offset+DIM3*1+YY1] -= ty; |
| 397 | f[j_coord_offset+DIM3*1+ZZ2] -= tz; |
| 398 | |
| 399 | } |
| 400 | |
| 401 | /************************** |
| 402 | * CALCULATE INTERACTIONS * |
| 403 | **************************/ |
| 404 | |
| 405 | if (rsq02<rcutoff2) |
| 406 | { |
| 407 | |
| 408 | r02 = rsq02*rinv02; |
| 409 | |
| 410 | /* EWALD ELECTROSTATICS */ |
| 411 | |
| 412 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 413 | ewrt = r02*ewtabscale; |
| 414 | ewitab = ewrt; |
| 415 | eweps = ewrt-ewitab; |
| 416 | ewitab = 4*ewitab; |
| 417 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 418 | velec = qq02*(rinv02-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 419 | felec = qq02*rinv02*(rinvsq02-felec); |
| 420 | |
| 421 | d = r02-rswitch; |
| 422 | d = (d>0.0) ? d : 0.0; |
| 423 | d2 = d*d; |
| 424 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 425 | |
| 426 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 427 | |
| 428 | /* Evaluate switch function */ |
| 429 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 430 | felec = felec*sw - rinv02*velec*dsw; |
| 431 | velec *= sw; |
| 432 | |
| 433 | /* Update potential sums from outer loop */ |
| 434 | velecsum += velec; |
| 435 | |
| 436 | fscal = felec; |
| 437 | |
| 438 | /* Calculate temporary vectorial force */ |
| 439 | tx = fscal*dx02; |
| 440 | ty = fscal*dy02; |
| 441 | tz = fscal*dz02; |
| 442 | |
| 443 | /* Update vectorial force */ |
| 444 | fix0 += tx; |
| 445 | fiy0 += ty; |
| 446 | fiz0 += tz; |
| 447 | f[j_coord_offset+DIM3*2+XX0] -= tx; |
| 448 | f[j_coord_offset+DIM3*2+YY1] -= ty; |
| 449 | f[j_coord_offset+DIM3*2+ZZ2] -= tz; |
| 450 | |
| 451 | } |
| 452 | |
| 453 | /************************** |
| 454 | * CALCULATE INTERACTIONS * |
| 455 | **************************/ |
| 456 | |
| 457 | if (rsq10<rcutoff2) |
| 458 | { |
| 459 | |
| 460 | r10 = rsq10*rinv10; |
| 461 | |
| 462 | /* EWALD ELECTROSTATICS */ |
| 463 | |
| 464 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 465 | ewrt = r10*ewtabscale; |
| 466 | ewitab = ewrt; |
| 467 | eweps = ewrt-ewitab; |
| 468 | ewitab = 4*ewitab; |
| 469 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 470 | velec = qq10*(rinv10-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 471 | felec = qq10*rinv10*(rinvsq10-felec); |
| 472 | |
| 473 | d = r10-rswitch; |
| 474 | d = (d>0.0) ? d : 0.0; |
| 475 | d2 = d*d; |
| 476 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 477 | |
| 478 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 479 | |
| 480 | /* Evaluate switch function */ |
| 481 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 482 | felec = felec*sw - rinv10*velec*dsw; |
| 483 | velec *= sw; |
| 484 | |
| 485 | /* Update potential sums from outer loop */ |
| 486 | velecsum += velec; |
| 487 | |
| 488 | fscal = felec; |
| 489 | |
| 490 | /* Calculate temporary vectorial force */ |
| 491 | tx = fscal*dx10; |
| 492 | ty = fscal*dy10; |
| 493 | tz = fscal*dz10; |
| 494 | |
| 495 | /* Update vectorial force */ |
| 496 | fix1 += tx; |
| 497 | fiy1 += ty; |
| 498 | fiz1 += tz; |
| 499 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
| 500 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
| 501 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
| 502 | |
| 503 | } |
| 504 | |
| 505 | /************************** |
| 506 | * CALCULATE INTERACTIONS * |
| 507 | **************************/ |
| 508 | |
| 509 | if (rsq11<rcutoff2) |
| 510 | { |
| 511 | |
| 512 | r11 = rsq11*rinv11; |
| 513 | |
| 514 | /* EWALD ELECTROSTATICS */ |
| 515 | |
| 516 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 517 | ewrt = r11*ewtabscale; |
| 518 | ewitab = ewrt; |
| 519 | eweps = ewrt-ewitab; |
| 520 | ewitab = 4*ewitab; |
| 521 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 522 | velec = qq11*(rinv11-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 523 | felec = qq11*rinv11*(rinvsq11-felec); |
| 524 | |
| 525 | d = r11-rswitch; |
| 526 | d = (d>0.0) ? d : 0.0; |
| 527 | d2 = d*d; |
| 528 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 529 | |
| 530 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 531 | |
| 532 | /* Evaluate switch function */ |
| 533 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 534 | felec = felec*sw - rinv11*velec*dsw; |
| 535 | velec *= sw; |
| 536 | |
| 537 | /* Update potential sums from outer loop */ |
| 538 | velecsum += velec; |
| 539 | |
| 540 | fscal = felec; |
| 541 | |
| 542 | /* Calculate temporary vectorial force */ |
| 543 | tx = fscal*dx11; |
| 544 | ty = fscal*dy11; |
| 545 | tz = fscal*dz11; |
| 546 | |
| 547 | /* Update vectorial force */ |
| 548 | fix1 += tx; |
| 549 | fiy1 += ty; |
| 550 | fiz1 += tz; |
| 551 | f[j_coord_offset+DIM3*1+XX0] -= tx; |
| 552 | f[j_coord_offset+DIM3*1+YY1] -= ty; |
| 553 | f[j_coord_offset+DIM3*1+ZZ2] -= tz; |
| 554 | |
| 555 | } |
| 556 | |
| 557 | /************************** |
| 558 | * CALCULATE INTERACTIONS * |
| 559 | **************************/ |
| 560 | |
| 561 | if (rsq12<rcutoff2) |
| 562 | { |
| 563 | |
| 564 | r12 = rsq12*rinv12; |
| 565 | |
| 566 | /* EWALD ELECTROSTATICS */ |
| 567 | |
| 568 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 569 | ewrt = r12*ewtabscale; |
| 570 | ewitab = ewrt; |
| 571 | eweps = ewrt-ewitab; |
| 572 | ewitab = 4*ewitab; |
| 573 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 574 | velec = qq12*(rinv12-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 575 | felec = qq12*rinv12*(rinvsq12-felec); |
| 576 | |
| 577 | d = r12-rswitch; |
| 578 | d = (d>0.0) ? d : 0.0; |
| 579 | d2 = d*d; |
| 580 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 581 | |
| 582 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 583 | |
| 584 | /* Evaluate switch function */ |
| 585 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 586 | felec = felec*sw - rinv12*velec*dsw; |
| 587 | velec *= sw; |
| 588 | |
| 589 | /* Update potential sums from outer loop */ |
| 590 | velecsum += velec; |
| 591 | |
| 592 | fscal = felec; |
| 593 | |
| 594 | /* Calculate temporary vectorial force */ |
| 595 | tx = fscal*dx12; |
| 596 | ty = fscal*dy12; |
| 597 | tz = fscal*dz12; |
| 598 | |
| 599 | /* Update vectorial force */ |
| 600 | fix1 += tx; |
| 601 | fiy1 += ty; |
| 602 | fiz1 += tz; |
| 603 | f[j_coord_offset+DIM3*2+XX0] -= tx; |
| 604 | f[j_coord_offset+DIM3*2+YY1] -= ty; |
| 605 | f[j_coord_offset+DIM3*2+ZZ2] -= tz; |
| 606 | |
| 607 | } |
| 608 | |
| 609 | /************************** |
| 610 | * CALCULATE INTERACTIONS * |
| 611 | **************************/ |
| 612 | |
| 613 | if (rsq20<rcutoff2) |
| 614 | { |
| 615 | |
| 616 | r20 = rsq20*rinv20; |
| 617 | |
| 618 | /* EWALD ELECTROSTATICS */ |
| 619 | |
| 620 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 621 | ewrt = r20*ewtabscale; |
| 622 | ewitab = ewrt; |
| 623 | eweps = ewrt-ewitab; |
| 624 | ewitab = 4*ewitab; |
| 625 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 626 | velec = qq20*(rinv20-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 627 | felec = qq20*rinv20*(rinvsq20-felec); |
| 628 | |
| 629 | d = r20-rswitch; |
| 630 | d = (d>0.0) ? d : 0.0; |
| 631 | d2 = d*d; |
| 632 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 633 | |
| 634 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 635 | |
| 636 | /* Evaluate switch function */ |
| 637 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 638 | felec = felec*sw - rinv20*velec*dsw; |
| 639 | velec *= sw; |
| 640 | |
| 641 | /* Update potential sums from outer loop */ |
| 642 | velecsum += velec; |
| 643 | |
| 644 | fscal = felec; |
| 645 | |
| 646 | /* Calculate temporary vectorial force */ |
| 647 | tx = fscal*dx20; |
| 648 | ty = fscal*dy20; |
| 649 | tz = fscal*dz20; |
| 650 | |
| 651 | /* Update vectorial force */ |
| 652 | fix2 += tx; |
| 653 | fiy2 += ty; |
| 654 | fiz2 += tz; |
| 655 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
| 656 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
| 657 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
| 658 | |
| 659 | } |
| 660 | |
| 661 | /************************** |
| 662 | * CALCULATE INTERACTIONS * |
| 663 | **************************/ |
| 664 | |
| 665 | if (rsq21<rcutoff2) |
| 666 | { |
| 667 | |
| 668 | r21 = rsq21*rinv21; |
| 669 | |
| 670 | /* EWALD ELECTROSTATICS */ |
| 671 | |
| 672 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 673 | ewrt = r21*ewtabscale; |
| 674 | ewitab = ewrt; |
| 675 | eweps = ewrt-ewitab; |
| 676 | ewitab = 4*ewitab; |
| 677 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 678 | velec = qq21*(rinv21-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 679 | felec = qq21*rinv21*(rinvsq21-felec); |
| 680 | |
| 681 | d = r21-rswitch; |
| 682 | d = (d>0.0) ? d : 0.0; |
| 683 | d2 = d*d; |
| 684 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 685 | |
| 686 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 687 | |
| 688 | /* Evaluate switch function */ |
| 689 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 690 | felec = felec*sw - rinv21*velec*dsw; |
| 691 | velec *= sw; |
| 692 | |
| 693 | /* Update potential sums from outer loop */ |
| 694 | velecsum += velec; |
| 695 | |
| 696 | fscal = felec; |
| 697 | |
| 698 | /* Calculate temporary vectorial force */ |
| 699 | tx = fscal*dx21; |
| 700 | ty = fscal*dy21; |
| 701 | tz = fscal*dz21; |
| 702 | |
| 703 | /* Update vectorial force */ |
| 704 | fix2 += tx; |
| 705 | fiy2 += ty; |
| 706 | fiz2 += tz; |
| 707 | f[j_coord_offset+DIM3*1+XX0] -= tx; |
| 708 | f[j_coord_offset+DIM3*1+YY1] -= ty; |
| 709 | f[j_coord_offset+DIM3*1+ZZ2] -= tz; |
| 710 | |
| 711 | } |
| 712 | |
| 713 | /************************** |
| 714 | * CALCULATE INTERACTIONS * |
| 715 | **************************/ |
| 716 | |
| 717 | if (rsq22<rcutoff2) |
| 718 | { |
| 719 | |
| 720 | r22 = rsq22*rinv22; |
| 721 | |
| 722 | /* EWALD ELECTROSTATICS */ |
| 723 | |
| 724 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 725 | ewrt = r22*ewtabscale; |
| 726 | ewitab = ewrt; |
| 727 | eweps = ewrt-ewitab; |
| 728 | ewitab = 4*ewitab; |
| 729 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 730 | velec = qq22*(rinv22-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 731 | felec = qq22*rinv22*(rinvsq22-felec); |
| 732 | |
| 733 | d = r22-rswitch; |
| 734 | d = (d>0.0) ? d : 0.0; |
| 735 | d2 = d*d; |
| 736 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 737 | |
| 738 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 739 | |
| 740 | /* Evaluate switch function */ |
| 741 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 742 | felec = felec*sw - rinv22*velec*dsw; |
| 743 | velec *= sw; |
| 744 | |
| 745 | /* Update potential sums from outer loop */ |
| 746 | velecsum += velec; |
| 747 | |
| 748 | fscal = felec; |
| 749 | |
| 750 | /* Calculate temporary vectorial force */ |
| 751 | tx = fscal*dx22; |
| 752 | ty = fscal*dy22; |
| 753 | tz = fscal*dz22; |
| 754 | |
| 755 | /* Update vectorial force */ |
| 756 | fix2 += tx; |
| 757 | fiy2 += ty; |
| 758 | fiz2 += tz; |
| 759 | f[j_coord_offset+DIM3*2+XX0] -= tx; |
| 760 | f[j_coord_offset+DIM3*2+YY1] -= ty; |
| 761 | f[j_coord_offset+DIM3*2+ZZ2] -= tz; |
| 762 | |
| 763 | } |
| 764 | |
| 765 | /* Inner loop uses 538 flops */ |
| 766 | } |
| 767 | /* End of innermost loop */ |
| 768 | |
| 769 | tx = ty = tz = 0; |
| 770 | f[i_coord_offset+DIM3*0+XX0] += fix0; |
| 771 | f[i_coord_offset+DIM3*0+YY1] += fiy0; |
| 772 | f[i_coord_offset+DIM3*0+ZZ2] += fiz0; |
| 773 | tx += fix0; |
| 774 | ty += fiy0; |
| 775 | tz += fiz0; |
| 776 | f[i_coord_offset+DIM3*1+XX0] += fix1; |
| 777 | f[i_coord_offset+DIM3*1+YY1] += fiy1; |
| 778 | f[i_coord_offset+DIM3*1+ZZ2] += fiz1; |
| 779 | tx += fix1; |
| 780 | ty += fiy1; |
| 781 | tz += fiz1; |
| 782 | f[i_coord_offset+DIM3*2+XX0] += fix2; |
| 783 | f[i_coord_offset+DIM3*2+YY1] += fiy2; |
| 784 | f[i_coord_offset+DIM3*2+ZZ2] += fiz2; |
| 785 | tx += fix2; |
| 786 | ty += fiy2; |
| 787 | tz += fiz2; |
| 788 | fshift[i_shift_offset+XX0] += tx; |
| 789 | fshift[i_shift_offset+YY1] += ty; |
| 790 | fshift[i_shift_offset+ZZ2] += tz; |
| 791 | |
| 792 | ggid = gid[iidx]; |
| 793 | /* Update potential energies */ |
| 794 | kernel_data->energygrp_elec[ggid] += velecsum; |
| 795 | kernel_data->energygrp_vdw[ggid] += vvdwsum; |
| 796 | |
| 797 | /* Increment number of inner iterations */ |
| 798 | inneriter += j_index_end - j_index_start; |
| 799 | |
| 800 | /* Outer loop uses 32 flops */ |
| 801 | } |
| 802 | |
| 803 | /* Increment number of outer iterations */ |
| 804 | outeriter += nri; |
| 805 | |
| 806 | /* Update outer/inner flops */ |
| 807 | |
| 808 | inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*32 + inneriter*538)(nrnb)->n[eNR_NBKERNEL_ELEC_VDW_W3W3_VF] += outeriter*32 + inneriter*538; |
| 809 | } |
| 810 | /* |
| 811 | * Gromacs nonbonded kernel: nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_F_c |
| 812 | * Electrostatics interaction: Ewald |
| 813 | * VdW interaction: LennardJones |
| 814 | * Geometry: Water3-Water3 |
| 815 | * Calculate force/pot: Force |
| 816 | */ |
| 817 | void |
| 818 | nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_F_c |
| 819 | (t_nblist * gmx_restrict__restrict nlist, |
| 820 | rvec * gmx_restrict__restrict xx, |
| 821 | rvec * gmx_restrict__restrict ff, |
| 822 | t_forcerec * gmx_restrict__restrict fr, |
| 823 | t_mdatoms * gmx_restrict__restrict mdatoms, |
| 824 | nb_kernel_data_t gmx_unused__attribute__ ((unused)) * gmx_restrict__restrict kernel_data, |
| 825 | t_nrnb * gmx_restrict__restrict nrnb) |
| 826 | { |
| 827 | int i_shift_offset,i_coord_offset,j_coord_offset; |
| 828 | int j_index_start,j_index_end; |
| 829 | int nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter; |
| 830 | real shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2; |
| 831 | int *iinr,*jindex,*jjnr,*shiftidx,*gid; |
| 832 | real *shiftvec,*fshift,*x,*f; |
| 833 | int vdwioffset0; |
| 834 | real ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0; |
| 835 | int vdwioffset1; |
| 836 | real ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1; |
| 837 | int vdwioffset2; |
| 838 | real ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2; |
| 839 | int vdwjidx0; |
| 840 | real jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0; |
| 841 | int vdwjidx1; |
| 842 | real jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1; |
| 843 | int vdwjidx2; |
| 844 | real jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2; |
| 845 | real dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00; |
| 846 | real dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01,cexp1_01,cexp2_01; |
| 847 | real dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02,cexp1_02,cexp2_02; |
| 848 | real dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10,cexp1_10,cexp2_10; |
| 849 | real dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11,cexp1_11,cexp2_11; |
| 850 | real dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12,cexp1_12,cexp2_12; |
| 851 | real dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20,cexp1_20,cexp2_20; |
| 852 | real dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21,cexp1_21,cexp2_21; |
| 853 | real dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22,cexp1_22,cexp2_22; |
| 854 | real velec,felec,velecsum,facel,crf,krf,krf2; |
| 855 | real *charge; |
| 856 | int nvdwtype; |
| 857 | real rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6; |
| 858 | int *vdwtype; |
| 859 | real *vdwparam; |
| 860 | int ewitab; |
| 861 | real ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace; |
| 862 | real *ewtab; |
| 863 | real rswitch,swV3,swV4,swV5,swF2,swF3,swF4,d,d2,sw,dsw; |
| 864 | |
| 865 | x = xx[0]; |
| 866 | f = ff[0]; |
| 867 | |
| 868 | nri = nlist->nri; |
| 869 | iinr = nlist->iinr; |
| 870 | jindex = nlist->jindex; |
| 871 | jjnr = nlist->jjnr; |
| 872 | shiftidx = nlist->shift; |
| 873 | gid = nlist->gid; |
Value stored to 'gid' is never read | |
| 874 | shiftvec = fr->shift_vec[0]; |
| 875 | fshift = fr->fshift[0]; |
| 876 | facel = fr->epsfac; |
| 877 | charge = mdatoms->chargeA; |
| 878 | nvdwtype = fr->ntype; |
| 879 | vdwparam = fr->nbfp; |
| 880 | vdwtype = mdatoms->typeA; |
| 881 | |
| 882 | sh_ewald = fr->ic->sh_ewald; |
| 883 | ewtab = fr->ic->tabq_coul_FDV0; |
| 884 | ewtabscale = fr->ic->tabq_scale; |
| 885 | ewtabhalfspace = 0.5/ewtabscale; |
| 886 | |
| 887 | /* Setup water-specific parameters */ |
| 888 | inr = nlist->iinr[0]; |
| 889 | iq0 = facel*charge[inr+0]; |
| 890 | iq1 = facel*charge[inr+1]; |
| 891 | iq2 = facel*charge[inr+2]; |
| 892 | vdwioffset0 = 2*nvdwtype*vdwtype[inr+0]; |
| 893 | |
| 894 | jq0 = charge[inr+0]; |
| 895 | jq1 = charge[inr+1]; |
| 896 | jq2 = charge[inr+2]; |
| 897 | vdwjidx0 = 2*vdwtype[inr+0]; |
| 898 | qq00 = iq0*jq0; |
| 899 | c6_00 = vdwparam[vdwioffset0+vdwjidx0]; |
| 900 | c12_00 = vdwparam[vdwioffset0+vdwjidx0+1]; |
| 901 | qq01 = iq0*jq1; |
| 902 | qq02 = iq0*jq2; |
| 903 | qq10 = iq1*jq0; |
| 904 | qq11 = iq1*jq1; |
| 905 | qq12 = iq1*jq2; |
| 906 | qq20 = iq2*jq0; |
| 907 | qq21 = iq2*jq1; |
| 908 | qq22 = iq2*jq2; |
| 909 | |
| 910 | /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */ |
| 911 | rcutoff = fr->rcoulomb; |
| 912 | rcutoff2 = rcutoff*rcutoff; |
| 913 | |
| 914 | rswitch = fr->rcoulomb_switch; |
| 915 | /* Setup switch parameters */ |
| 916 | d = rcutoff-rswitch; |
| 917 | swV3 = -10.0/(d*d*d); |
| 918 | swV4 = 15.0/(d*d*d*d); |
| 919 | swV5 = -6.0/(d*d*d*d*d); |
| 920 | swF2 = -30.0/(d*d*d); |
| 921 | swF3 = 60.0/(d*d*d*d); |
| 922 | swF4 = -30.0/(d*d*d*d*d); |
| 923 | |
| 924 | outeriter = 0; |
| 925 | inneriter = 0; |
| 926 | |
| 927 | /* Start outer loop over neighborlists */ |
| 928 | for(iidx=0; iidx<nri; iidx++) |
| 929 | { |
| 930 | /* Load shift vector for this list */ |
| 931 | i_shift_offset = DIM3*shiftidx[iidx]; |
| 932 | shX = shiftvec[i_shift_offset+XX0]; |
| 933 | shY = shiftvec[i_shift_offset+YY1]; |
| 934 | shZ = shiftvec[i_shift_offset+ZZ2]; |
| 935 | |
| 936 | /* Load limits for loop over neighbors */ |
| 937 | j_index_start = jindex[iidx]; |
| 938 | j_index_end = jindex[iidx+1]; |
| 939 | |
| 940 | /* Get outer coordinate index */ |
| 941 | inr = iinr[iidx]; |
| 942 | i_coord_offset = DIM3*inr; |
| 943 | |
| 944 | /* Load i particle coords and add shift vector */ |
| 945 | ix0 = shX + x[i_coord_offset+DIM3*0+XX0]; |
| 946 | iy0 = shY + x[i_coord_offset+DIM3*0+YY1]; |
| 947 | iz0 = shZ + x[i_coord_offset+DIM3*0+ZZ2]; |
| 948 | ix1 = shX + x[i_coord_offset+DIM3*1+XX0]; |
| 949 | iy1 = shY + x[i_coord_offset+DIM3*1+YY1]; |
| 950 | iz1 = shZ + x[i_coord_offset+DIM3*1+ZZ2]; |
| 951 | ix2 = shX + x[i_coord_offset+DIM3*2+XX0]; |
| 952 | iy2 = shY + x[i_coord_offset+DIM3*2+YY1]; |
| 953 | iz2 = shZ + x[i_coord_offset+DIM3*2+ZZ2]; |
| 954 | |
| 955 | fix0 = 0.0; |
| 956 | fiy0 = 0.0; |
| 957 | fiz0 = 0.0; |
| 958 | fix1 = 0.0; |
| 959 | fiy1 = 0.0; |
| 960 | fiz1 = 0.0; |
| 961 | fix2 = 0.0; |
| 962 | fiy2 = 0.0; |
| 963 | fiz2 = 0.0; |
| 964 | |
| 965 | /* Start inner kernel loop */ |
| 966 | for(jidx=j_index_start; jidx<j_index_end; jidx++) |
| 967 | { |
| 968 | /* Get j neighbor index, and coordinate index */ |
| 969 | jnr = jjnr[jidx]; |
| 970 | j_coord_offset = DIM3*jnr; |
| 971 | |
| 972 | /* load j atom coordinates */ |
| 973 | jx0 = x[j_coord_offset+DIM3*0+XX0]; |
| 974 | jy0 = x[j_coord_offset+DIM3*0+YY1]; |
| 975 | jz0 = x[j_coord_offset+DIM3*0+ZZ2]; |
| 976 | jx1 = x[j_coord_offset+DIM3*1+XX0]; |
| 977 | jy1 = x[j_coord_offset+DIM3*1+YY1]; |
| 978 | jz1 = x[j_coord_offset+DIM3*1+ZZ2]; |
| 979 | jx2 = x[j_coord_offset+DIM3*2+XX0]; |
| 980 | jy2 = x[j_coord_offset+DIM3*2+YY1]; |
| 981 | jz2 = x[j_coord_offset+DIM3*2+ZZ2]; |
| 982 | |
| 983 | /* Calculate displacement vector */ |
| 984 | dx00 = ix0 - jx0; |
| 985 | dy00 = iy0 - jy0; |
| 986 | dz00 = iz0 - jz0; |
| 987 | dx01 = ix0 - jx1; |
| 988 | dy01 = iy0 - jy1; |
| 989 | dz01 = iz0 - jz1; |
| 990 | dx02 = ix0 - jx2; |
| 991 | dy02 = iy0 - jy2; |
| 992 | dz02 = iz0 - jz2; |
| 993 | dx10 = ix1 - jx0; |
| 994 | dy10 = iy1 - jy0; |
| 995 | dz10 = iz1 - jz0; |
| 996 | dx11 = ix1 - jx1; |
| 997 | dy11 = iy1 - jy1; |
| 998 | dz11 = iz1 - jz1; |
| 999 | dx12 = ix1 - jx2; |
| 1000 | dy12 = iy1 - jy2; |
| 1001 | dz12 = iz1 - jz2; |
| 1002 | dx20 = ix2 - jx0; |
| 1003 | dy20 = iy2 - jy0; |
| 1004 | dz20 = iz2 - jz0; |
| 1005 | dx21 = ix2 - jx1; |
| 1006 | dy21 = iy2 - jy1; |
| 1007 | dz21 = iz2 - jz1; |
| 1008 | dx22 = ix2 - jx2; |
| 1009 | dy22 = iy2 - jy2; |
| 1010 | dz22 = iz2 - jz2; |
| 1011 | |
| 1012 | /* Calculate squared distance and things based on it */ |
| 1013 | rsq00 = dx00*dx00+dy00*dy00+dz00*dz00; |
| 1014 | rsq01 = dx01*dx01+dy01*dy01+dz01*dz01; |
| 1015 | rsq02 = dx02*dx02+dy02*dy02+dz02*dz02; |
| 1016 | rsq10 = dx10*dx10+dy10*dy10+dz10*dz10; |
| 1017 | rsq11 = dx11*dx11+dy11*dy11+dz11*dz11; |
| 1018 | rsq12 = dx12*dx12+dy12*dy12+dz12*dz12; |
| 1019 | rsq20 = dx20*dx20+dy20*dy20+dz20*dz20; |
| 1020 | rsq21 = dx21*dx21+dy21*dy21+dz21*dz21; |
| 1021 | rsq22 = dx22*dx22+dy22*dy22+dz22*dz22; |
| 1022 | |
| 1023 | rinv00 = gmx_invsqrt(rsq00)gmx_software_invsqrt(rsq00); |
| 1024 | rinv01 = gmx_invsqrt(rsq01)gmx_software_invsqrt(rsq01); |
| 1025 | rinv02 = gmx_invsqrt(rsq02)gmx_software_invsqrt(rsq02); |
| 1026 | rinv10 = gmx_invsqrt(rsq10)gmx_software_invsqrt(rsq10); |
| 1027 | rinv11 = gmx_invsqrt(rsq11)gmx_software_invsqrt(rsq11); |
| 1028 | rinv12 = gmx_invsqrt(rsq12)gmx_software_invsqrt(rsq12); |
| 1029 | rinv20 = gmx_invsqrt(rsq20)gmx_software_invsqrt(rsq20); |
| 1030 | rinv21 = gmx_invsqrt(rsq21)gmx_software_invsqrt(rsq21); |
| 1031 | rinv22 = gmx_invsqrt(rsq22)gmx_software_invsqrt(rsq22); |
| 1032 | |
| 1033 | rinvsq00 = rinv00*rinv00; |
| 1034 | rinvsq01 = rinv01*rinv01; |
| 1035 | rinvsq02 = rinv02*rinv02; |
| 1036 | rinvsq10 = rinv10*rinv10; |
| 1037 | rinvsq11 = rinv11*rinv11; |
| 1038 | rinvsq12 = rinv12*rinv12; |
| 1039 | rinvsq20 = rinv20*rinv20; |
| 1040 | rinvsq21 = rinv21*rinv21; |
| 1041 | rinvsq22 = rinv22*rinv22; |
| 1042 | |
| 1043 | /************************** |
| 1044 | * CALCULATE INTERACTIONS * |
| 1045 | **************************/ |
| 1046 | |
| 1047 | if (rsq00<rcutoff2) |
| 1048 | { |
| 1049 | |
| 1050 | r00 = rsq00*rinv00; |
| 1051 | |
| 1052 | /* EWALD ELECTROSTATICS */ |
| 1053 | |
| 1054 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 1055 | ewrt = r00*ewtabscale; |
| 1056 | ewitab = ewrt; |
| 1057 | eweps = ewrt-ewitab; |
| 1058 | ewitab = 4*ewitab; |
| 1059 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 1060 | velec = qq00*(rinv00-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 1061 | felec = qq00*rinv00*(rinvsq00-felec); |
| 1062 | |
| 1063 | /* LENNARD-JONES DISPERSION/REPULSION */ |
| 1064 | |
| 1065 | rinvsix = rinvsq00*rinvsq00*rinvsq00; |
| 1066 | vvdw6 = c6_00*rinvsix; |
| 1067 | vvdw12 = c12_00*rinvsix*rinvsix; |
| 1068 | vvdw = vvdw12*(1.0/12.0) - vvdw6*(1.0/6.0); |
| 1069 | fvdw = (vvdw12-vvdw6)*rinvsq00; |
| 1070 | |
| 1071 | d = r00-rswitch; |
| 1072 | d = (d>0.0) ? d : 0.0; |
| 1073 | d2 = d*d; |
| 1074 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 1075 | |
| 1076 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 1077 | |
| 1078 | /* Evaluate switch function */ |
| 1079 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 1080 | felec = felec*sw - rinv00*velec*dsw; |
| 1081 | fvdw = fvdw*sw - rinv00*vvdw*dsw; |
| 1082 | |
| 1083 | fscal = felec+fvdw; |
| 1084 | |
| 1085 | /* Calculate temporary vectorial force */ |
| 1086 | tx = fscal*dx00; |
| 1087 | ty = fscal*dy00; |
| 1088 | tz = fscal*dz00; |
| 1089 | |
| 1090 | /* Update vectorial force */ |
| 1091 | fix0 += tx; |
| 1092 | fiy0 += ty; |
| 1093 | fiz0 += tz; |
| 1094 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
| 1095 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
| 1096 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
| 1097 | |
| 1098 | } |
| 1099 | |
| 1100 | /************************** |
| 1101 | * CALCULATE INTERACTIONS * |
| 1102 | **************************/ |
| 1103 | |
| 1104 | if (rsq01<rcutoff2) |
| 1105 | { |
| 1106 | |
| 1107 | r01 = rsq01*rinv01; |
| 1108 | |
| 1109 | /* EWALD ELECTROSTATICS */ |
| 1110 | |
| 1111 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 1112 | ewrt = r01*ewtabscale; |
| 1113 | ewitab = ewrt; |
| 1114 | eweps = ewrt-ewitab; |
| 1115 | ewitab = 4*ewitab; |
| 1116 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 1117 | velec = qq01*(rinv01-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 1118 | felec = qq01*rinv01*(rinvsq01-felec); |
| 1119 | |
| 1120 | d = r01-rswitch; |
| 1121 | d = (d>0.0) ? d : 0.0; |
| 1122 | d2 = d*d; |
| 1123 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 1124 | |
| 1125 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 1126 | |
| 1127 | /* Evaluate switch function */ |
| 1128 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 1129 | felec = felec*sw - rinv01*velec*dsw; |
| 1130 | |
| 1131 | fscal = felec; |
| 1132 | |
| 1133 | /* Calculate temporary vectorial force */ |
| 1134 | tx = fscal*dx01; |
| 1135 | ty = fscal*dy01; |
| 1136 | tz = fscal*dz01; |
| 1137 | |
| 1138 | /* Update vectorial force */ |
| 1139 | fix0 += tx; |
| 1140 | fiy0 += ty; |
| 1141 | fiz0 += tz; |
| 1142 | f[j_coord_offset+DIM3*1+XX0] -= tx; |
| 1143 | f[j_coord_offset+DIM3*1+YY1] -= ty; |
| 1144 | f[j_coord_offset+DIM3*1+ZZ2] -= tz; |
| 1145 | |
| 1146 | } |
| 1147 | |
| 1148 | /************************** |
| 1149 | * CALCULATE INTERACTIONS * |
| 1150 | **************************/ |
| 1151 | |
| 1152 | if (rsq02<rcutoff2) |
| 1153 | { |
| 1154 | |
| 1155 | r02 = rsq02*rinv02; |
| 1156 | |
| 1157 | /* EWALD ELECTROSTATICS */ |
| 1158 | |
| 1159 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 1160 | ewrt = r02*ewtabscale; |
| 1161 | ewitab = ewrt; |
| 1162 | eweps = ewrt-ewitab; |
| 1163 | ewitab = 4*ewitab; |
| 1164 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 1165 | velec = qq02*(rinv02-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 1166 | felec = qq02*rinv02*(rinvsq02-felec); |
| 1167 | |
| 1168 | d = r02-rswitch; |
| 1169 | d = (d>0.0) ? d : 0.0; |
| 1170 | d2 = d*d; |
| 1171 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 1172 | |
| 1173 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 1174 | |
| 1175 | /* Evaluate switch function */ |
| 1176 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 1177 | felec = felec*sw - rinv02*velec*dsw; |
| 1178 | |
| 1179 | fscal = felec; |
| 1180 | |
| 1181 | /* Calculate temporary vectorial force */ |
| 1182 | tx = fscal*dx02; |
| 1183 | ty = fscal*dy02; |
| 1184 | tz = fscal*dz02; |
| 1185 | |
| 1186 | /* Update vectorial force */ |
| 1187 | fix0 += tx; |
| 1188 | fiy0 += ty; |
| 1189 | fiz0 += tz; |
| 1190 | f[j_coord_offset+DIM3*2+XX0] -= tx; |
| 1191 | f[j_coord_offset+DIM3*2+YY1] -= ty; |
| 1192 | f[j_coord_offset+DIM3*2+ZZ2] -= tz; |
| 1193 | |
| 1194 | } |
| 1195 | |
| 1196 | /************************** |
| 1197 | * CALCULATE INTERACTIONS * |
| 1198 | **************************/ |
| 1199 | |
| 1200 | if (rsq10<rcutoff2) |
| 1201 | { |
| 1202 | |
| 1203 | r10 = rsq10*rinv10; |
| 1204 | |
| 1205 | /* EWALD ELECTROSTATICS */ |
| 1206 | |
| 1207 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 1208 | ewrt = r10*ewtabscale; |
| 1209 | ewitab = ewrt; |
| 1210 | eweps = ewrt-ewitab; |
| 1211 | ewitab = 4*ewitab; |
| 1212 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 1213 | velec = qq10*(rinv10-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 1214 | felec = qq10*rinv10*(rinvsq10-felec); |
| 1215 | |
| 1216 | d = r10-rswitch; |
| 1217 | d = (d>0.0) ? d : 0.0; |
| 1218 | d2 = d*d; |
| 1219 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 1220 | |
| 1221 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 1222 | |
| 1223 | /* Evaluate switch function */ |
| 1224 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 1225 | felec = felec*sw - rinv10*velec*dsw; |
| 1226 | |
| 1227 | fscal = felec; |
| 1228 | |
| 1229 | /* Calculate temporary vectorial force */ |
| 1230 | tx = fscal*dx10; |
| 1231 | ty = fscal*dy10; |
| 1232 | tz = fscal*dz10; |
| 1233 | |
| 1234 | /* Update vectorial force */ |
| 1235 | fix1 += tx; |
| 1236 | fiy1 += ty; |
| 1237 | fiz1 += tz; |
| 1238 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
| 1239 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
| 1240 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
| 1241 | |
| 1242 | } |
| 1243 | |
| 1244 | /************************** |
| 1245 | * CALCULATE INTERACTIONS * |
| 1246 | **************************/ |
| 1247 | |
| 1248 | if (rsq11<rcutoff2) |
| 1249 | { |
| 1250 | |
| 1251 | r11 = rsq11*rinv11; |
| 1252 | |
| 1253 | /* EWALD ELECTROSTATICS */ |
| 1254 | |
| 1255 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 1256 | ewrt = r11*ewtabscale; |
| 1257 | ewitab = ewrt; |
| 1258 | eweps = ewrt-ewitab; |
| 1259 | ewitab = 4*ewitab; |
| 1260 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 1261 | velec = qq11*(rinv11-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 1262 | felec = qq11*rinv11*(rinvsq11-felec); |
| 1263 | |
| 1264 | d = r11-rswitch; |
| 1265 | d = (d>0.0) ? d : 0.0; |
| 1266 | d2 = d*d; |
| 1267 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 1268 | |
| 1269 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 1270 | |
| 1271 | /* Evaluate switch function */ |
| 1272 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 1273 | felec = felec*sw - rinv11*velec*dsw; |
| 1274 | |
| 1275 | fscal = felec; |
| 1276 | |
| 1277 | /* Calculate temporary vectorial force */ |
| 1278 | tx = fscal*dx11; |
| 1279 | ty = fscal*dy11; |
| 1280 | tz = fscal*dz11; |
| 1281 | |
| 1282 | /* Update vectorial force */ |
| 1283 | fix1 += tx; |
| 1284 | fiy1 += ty; |
| 1285 | fiz1 += tz; |
| 1286 | f[j_coord_offset+DIM3*1+XX0] -= tx; |
| 1287 | f[j_coord_offset+DIM3*1+YY1] -= ty; |
| 1288 | f[j_coord_offset+DIM3*1+ZZ2] -= tz; |
| 1289 | |
| 1290 | } |
| 1291 | |
| 1292 | /************************** |
| 1293 | * CALCULATE INTERACTIONS * |
| 1294 | **************************/ |
| 1295 | |
| 1296 | if (rsq12<rcutoff2) |
| 1297 | { |
| 1298 | |
| 1299 | r12 = rsq12*rinv12; |
| 1300 | |
| 1301 | /* EWALD ELECTROSTATICS */ |
| 1302 | |
| 1303 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 1304 | ewrt = r12*ewtabscale; |
| 1305 | ewitab = ewrt; |
| 1306 | eweps = ewrt-ewitab; |
| 1307 | ewitab = 4*ewitab; |
| 1308 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 1309 | velec = qq12*(rinv12-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 1310 | felec = qq12*rinv12*(rinvsq12-felec); |
| 1311 | |
| 1312 | d = r12-rswitch; |
| 1313 | d = (d>0.0) ? d : 0.0; |
| 1314 | d2 = d*d; |
| 1315 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 1316 | |
| 1317 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 1318 | |
| 1319 | /* Evaluate switch function */ |
| 1320 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 1321 | felec = felec*sw - rinv12*velec*dsw; |
| 1322 | |
| 1323 | fscal = felec; |
| 1324 | |
| 1325 | /* Calculate temporary vectorial force */ |
| 1326 | tx = fscal*dx12; |
| 1327 | ty = fscal*dy12; |
| 1328 | tz = fscal*dz12; |
| 1329 | |
| 1330 | /* Update vectorial force */ |
| 1331 | fix1 += tx; |
| 1332 | fiy1 += ty; |
| 1333 | fiz1 += tz; |
| 1334 | f[j_coord_offset+DIM3*2+XX0] -= tx; |
| 1335 | f[j_coord_offset+DIM3*2+YY1] -= ty; |
| 1336 | f[j_coord_offset+DIM3*2+ZZ2] -= tz; |
| 1337 | |
| 1338 | } |
| 1339 | |
| 1340 | /************************** |
| 1341 | * CALCULATE INTERACTIONS * |
| 1342 | **************************/ |
| 1343 | |
| 1344 | if (rsq20<rcutoff2) |
| 1345 | { |
| 1346 | |
| 1347 | r20 = rsq20*rinv20; |
| 1348 | |
| 1349 | /* EWALD ELECTROSTATICS */ |
| 1350 | |
| 1351 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 1352 | ewrt = r20*ewtabscale; |
| 1353 | ewitab = ewrt; |
| 1354 | eweps = ewrt-ewitab; |
| 1355 | ewitab = 4*ewitab; |
| 1356 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 1357 | velec = qq20*(rinv20-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 1358 | felec = qq20*rinv20*(rinvsq20-felec); |
| 1359 | |
| 1360 | d = r20-rswitch; |
| 1361 | d = (d>0.0) ? d : 0.0; |
| 1362 | d2 = d*d; |
| 1363 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 1364 | |
| 1365 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 1366 | |
| 1367 | /* Evaluate switch function */ |
| 1368 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 1369 | felec = felec*sw - rinv20*velec*dsw; |
| 1370 | |
| 1371 | fscal = felec; |
| 1372 | |
| 1373 | /* Calculate temporary vectorial force */ |
| 1374 | tx = fscal*dx20; |
| 1375 | ty = fscal*dy20; |
| 1376 | tz = fscal*dz20; |
| 1377 | |
| 1378 | /* Update vectorial force */ |
| 1379 | fix2 += tx; |
| 1380 | fiy2 += ty; |
| 1381 | fiz2 += tz; |
| 1382 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
| 1383 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
| 1384 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
| 1385 | |
| 1386 | } |
| 1387 | |
| 1388 | /************************** |
| 1389 | * CALCULATE INTERACTIONS * |
| 1390 | **************************/ |
| 1391 | |
| 1392 | if (rsq21<rcutoff2) |
| 1393 | { |
| 1394 | |
| 1395 | r21 = rsq21*rinv21; |
| 1396 | |
| 1397 | /* EWALD ELECTROSTATICS */ |
| 1398 | |
| 1399 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 1400 | ewrt = r21*ewtabscale; |
| 1401 | ewitab = ewrt; |
| 1402 | eweps = ewrt-ewitab; |
| 1403 | ewitab = 4*ewitab; |
| 1404 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 1405 | velec = qq21*(rinv21-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 1406 | felec = qq21*rinv21*(rinvsq21-felec); |
| 1407 | |
| 1408 | d = r21-rswitch; |
| 1409 | d = (d>0.0) ? d : 0.0; |
| 1410 | d2 = d*d; |
| 1411 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 1412 | |
| 1413 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 1414 | |
| 1415 | /* Evaluate switch function */ |
| 1416 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 1417 | felec = felec*sw - rinv21*velec*dsw; |
| 1418 | |
| 1419 | fscal = felec; |
| 1420 | |
| 1421 | /* Calculate temporary vectorial force */ |
| 1422 | tx = fscal*dx21; |
| 1423 | ty = fscal*dy21; |
| 1424 | tz = fscal*dz21; |
| 1425 | |
| 1426 | /* Update vectorial force */ |
| 1427 | fix2 += tx; |
| 1428 | fiy2 += ty; |
| 1429 | fiz2 += tz; |
| 1430 | f[j_coord_offset+DIM3*1+XX0] -= tx; |
| 1431 | f[j_coord_offset+DIM3*1+YY1] -= ty; |
| 1432 | f[j_coord_offset+DIM3*1+ZZ2] -= tz; |
| 1433 | |
| 1434 | } |
| 1435 | |
| 1436 | /************************** |
| 1437 | * CALCULATE INTERACTIONS * |
| 1438 | **************************/ |
| 1439 | |
| 1440 | if (rsq22<rcutoff2) |
| 1441 | { |
| 1442 | |
| 1443 | r22 = rsq22*rinv22; |
| 1444 | |
| 1445 | /* EWALD ELECTROSTATICS */ |
| 1446 | |
| 1447 | /* Calculate Ewald table index by multiplying r with scale and truncate to integer */ |
| 1448 | ewrt = r22*ewtabscale; |
| 1449 | ewitab = ewrt; |
| 1450 | eweps = ewrt-ewitab; |
| 1451 | ewitab = 4*ewitab; |
| 1452 | felec = ewtab[ewitab]+eweps*ewtab[ewitab+1]; |
| 1453 | velec = qq22*(rinv22-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec))); |
| 1454 | felec = qq22*rinv22*(rinvsq22-felec); |
| 1455 | |
| 1456 | d = r22-rswitch; |
| 1457 | d = (d>0.0) ? d : 0.0; |
| 1458 | d2 = d*d; |
| 1459 | sw = 1.0+d2*d*(swV3+d*(swV4+d*swV5)); |
| 1460 | |
| 1461 | dsw = d2*(swF2+d*(swF3+d*swF4)); |
| 1462 | |
| 1463 | /* Evaluate switch function */ |
| 1464 | /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */ |
| 1465 | felec = felec*sw - rinv22*velec*dsw; |
| 1466 | |
| 1467 | fscal = felec; |
| 1468 | |
| 1469 | /* Calculate temporary vectorial force */ |
| 1470 | tx = fscal*dx22; |
| 1471 | ty = fscal*dy22; |
| 1472 | tz = fscal*dz22; |
| 1473 | |
| 1474 | /* Update vectorial force */ |
| 1475 | fix2 += tx; |
| 1476 | fiy2 += ty; |
| 1477 | fiz2 += tz; |
| 1478 | f[j_coord_offset+DIM3*2+XX0] -= tx; |
| 1479 | f[j_coord_offset+DIM3*2+YY1] -= ty; |
| 1480 | f[j_coord_offset+DIM3*2+ZZ2] -= tz; |
| 1481 | |
| 1482 | } |
| 1483 | |
| 1484 | /* Inner loop uses 518 flops */ |
| 1485 | } |
| 1486 | /* End of innermost loop */ |
| 1487 | |
| 1488 | tx = ty = tz = 0; |
| 1489 | f[i_coord_offset+DIM3*0+XX0] += fix0; |
| 1490 | f[i_coord_offset+DIM3*0+YY1] += fiy0; |
| 1491 | f[i_coord_offset+DIM3*0+ZZ2] += fiz0; |
| 1492 | tx += fix0; |
| 1493 | ty += fiy0; |
| 1494 | tz += fiz0; |
| 1495 | f[i_coord_offset+DIM3*1+XX0] += fix1; |
| 1496 | f[i_coord_offset+DIM3*1+YY1] += fiy1; |
| 1497 | f[i_coord_offset+DIM3*1+ZZ2] += fiz1; |
| 1498 | tx += fix1; |
| 1499 | ty += fiy1; |
| 1500 | tz += fiz1; |
| 1501 | f[i_coord_offset+DIM3*2+XX0] += fix2; |
| 1502 | f[i_coord_offset+DIM3*2+YY1] += fiy2; |
| 1503 | f[i_coord_offset+DIM3*2+ZZ2] += fiz2; |
| 1504 | tx += fix2; |
| 1505 | ty += fiy2; |
| 1506 | tz += fiz2; |
| 1507 | fshift[i_shift_offset+XX0] += tx; |
| 1508 | fshift[i_shift_offset+YY1] += ty; |
| 1509 | fshift[i_shift_offset+ZZ2] += tz; |
| 1510 | |
| 1511 | /* Increment number of inner iterations */ |
| 1512 | inneriter += j_index_end - j_index_start; |
| 1513 | |
| 1514 | /* Outer loop uses 30 flops */ |
| 1515 | } |
| 1516 | |
| 1517 | /* Increment number of outer iterations */ |
| 1518 | outeriter += nri; |
| 1519 | |
| 1520 | /* Update outer/inner flops */ |
| 1521 | |
| 1522 | inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*30 + inneriter*518)(nrnb)->n[eNR_NBKERNEL_ELEC_VDW_W3W3_F] += outeriter*30 + inneriter *518; |
| 1523 | } |