File: | gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c |
Location: | line 422, column 5 |
Description: | Value stored to 'gid' is never read |
1 | /* |
2 | * This file is part of the GROMACS molecular simulation package. |
3 | * |
4 | * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by |
5 | * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, |
6 | * and including many others, as listed in the AUTHORS file in the |
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8 | * |
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10 | * modify it under the terms of the GNU Lesser General Public License |
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16 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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18 | * |
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33 | * the research papers on the package. Check out http://www.gromacs.org. |
34 | */ |
35 | /* |
36 | * Note: this file was generated by the GROMACS c kernel generator. |
37 | */ |
38 | #ifdef HAVE_CONFIG_H1 |
39 | #include <config.h> |
40 | #endif |
41 | |
42 | #include <math.h> |
43 | |
44 | #include "../nb_kernel.h" |
45 | #include "types/simple.h" |
46 | #include "gromacs/math/vec.h" |
47 | #include "nrnb.h" |
48 | |
49 | /* |
50 | * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_VF_c |
51 | * Electrostatics interaction: Coulomb |
52 | * VdW interaction: CubicSplineTable |
53 | * Geometry: Water3-Particle |
54 | * Calculate force/pot: PotentialAndForce |
55 | */ |
56 | void |
57 | nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_VF_c |
58 | (t_nblist * gmx_restrict__restrict nlist, |
59 | rvec * gmx_restrict__restrict xx, |
60 | rvec * gmx_restrict__restrict ff, |
61 | t_forcerec * gmx_restrict__restrict fr, |
62 | t_mdatoms * gmx_restrict__restrict mdatoms, |
63 | nb_kernel_data_t gmx_unused__attribute__ ((unused)) * gmx_restrict__restrict kernel_data, |
64 | t_nrnb * gmx_restrict__restrict nrnb) |
65 | { |
66 | int i_shift_offset,i_coord_offset,j_coord_offset; |
67 | int j_index_start,j_index_end; |
68 | int nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter; |
69 | real shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2; |
70 | int *iinr,*jindex,*jjnr,*shiftidx,*gid; |
71 | real *shiftvec,*fshift,*x,*f; |
72 | int vdwioffset0; |
73 | real ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0; |
74 | int vdwioffset1; |
75 | real ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1; |
76 | int vdwioffset2; |
77 | real ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2; |
78 | int vdwjidx0; |
79 | real jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0; |
80 | real dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00; |
81 | real dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10,cexp1_10,cexp2_10; |
82 | real dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20,cexp1_20,cexp2_20; |
83 | real velec,felec,velecsum,facel,crf,krf,krf2; |
84 | real *charge; |
85 | int nvdwtype; |
86 | real rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6; |
87 | int *vdwtype; |
88 | real *vdwparam; |
89 | int vfitab; |
90 | real rt,vfeps,vftabscale,Y,F,Geps,Heps2,Fp,VV,FF; |
91 | real *vftab; |
92 | |
93 | x = xx[0]; |
94 | f = ff[0]; |
95 | |
96 | nri = nlist->nri; |
97 | iinr = nlist->iinr; |
98 | jindex = nlist->jindex; |
99 | jjnr = nlist->jjnr; |
100 | shiftidx = nlist->shift; |
101 | gid = nlist->gid; |
102 | shiftvec = fr->shift_vec[0]; |
103 | fshift = fr->fshift[0]; |
104 | facel = fr->epsfac; |
105 | charge = mdatoms->chargeA; |
106 | nvdwtype = fr->ntype; |
107 | vdwparam = fr->nbfp; |
108 | vdwtype = mdatoms->typeA; |
109 | |
110 | vftab = kernel_data->table_vdw->data; |
111 | vftabscale = kernel_data->table_vdw->scale; |
112 | |
113 | /* Setup water-specific parameters */ |
114 | inr = nlist->iinr[0]; |
115 | iq0 = facel*charge[inr+0]; |
116 | iq1 = facel*charge[inr+1]; |
117 | iq2 = facel*charge[inr+2]; |
118 | vdwioffset0 = 2*nvdwtype*vdwtype[inr+0]; |
119 | |
120 | outeriter = 0; |
121 | inneriter = 0; |
122 | |
123 | /* Start outer loop over neighborlists */ |
124 | for(iidx=0; iidx<nri; iidx++) |
125 | { |
126 | /* Load shift vector for this list */ |
127 | i_shift_offset = DIM3*shiftidx[iidx]; |
128 | shX = shiftvec[i_shift_offset+XX0]; |
129 | shY = shiftvec[i_shift_offset+YY1]; |
130 | shZ = shiftvec[i_shift_offset+ZZ2]; |
131 | |
132 | /* Load limits for loop over neighbors */ |
133 | j_index_start = jindex[iidx]; |
134 | j_index_end = jindex[iidx+1]; |
135 | |
136 | /* Get outer coordinate index */ |
137 | inr = iinr[iidx]; |
138 | i_coord_offset = DIM3*inr; |
139 | |
140 | /* Load i particle coords and add shift vector */ |
141 | ix0 = shX + x[i_coord_offset+DIM3*0+XX0]; |
142 | iy0 = shY + x[i_coord_offset+DIM3*0+YY1]; |
143 | iz0 = shZ + x[i_coord_offset+DIM3*0+ZZ2]; |
144 | ix1 = shX + x[i_coord_offset+DIM3*1+XX0]; |
145 | iy1 = shY + x[i_coord_offset+DIM3*1+YY1]; |
146 | iz1 = shZ + x[i_coord_offset+DIM3*1+ZZ2]; |
147 | ix2 = shX + x[i_coord_offset+DIM3*2+XX0]; |
148 | iy2 = shY + x[i_coord_offset+DIM3*2+YY1]; |
149 | iz2 = shZ + x[i_coord_offset+DIM3*2+ZZ2]; |
150 | |
151 | fix0 = 0.0; |
152 | fiy0 = 0.0; |
153 | fiz0 = 0.0; |
154 | fix1 = 0.0; |
155 | fiy1 = 0.0; |
156 | fiz1 = 0.0; |
157 | fix2 = 0.0; |
158 | fiy2 = 0.0; |
159 | fiz2 = 0.0; |
160 | |
161 | /* Reset potential sums */ |
162 | velecsum = 0.0; |
163 | vvdwsum = 0.0; |
164 | |
165 | /* Start inner kernel loop */ |
166 | for(jidx=j_index_start; jidx<j_index_end; jidx++) |
167 | { |
168 | /* Get j neighbor index, and coordinate index */ |
169 | jnr = jjnr[jidx]; |
170 | j_coord_offset = DIM3*jnr; |
171 | |
172 | /* load j atom coordinates */ |
173 | jx0 = x[j_coord_offset+DIM3*0+XX0]; |
174 | jy0 = x[j_coord_offset+DIM3*0+YY1]; |
175 | jz0 = x[j_coord_offset+DIM3*0+ZZ2]; |
176 | |
177 | /* Calculate displacement vector */ |
178 | dx00 = ix0 - jx0; |
179 | dy00 = iy0 - jy0; |
180 | dz00 = iz0 - jz0; |
181 | dx10 = ix1 - jx0; |
182 | dy10 = iy1 - jy0; |
183 | dz10 = iz1 - jz0; |
184 | dx20 = ix2 - jx0; |
185 | dy20 = iy2 - jy0; |
186 | dz20 = iz2 - jz0; |
187 | |
188 | /* Calculate squared distance and things based on it */ |
189 | rsq00 = dx00*dx00+dy00*dy00+dz00*dz00; |
190 | rsq10 = dx10*dx10+dy10*dy10+dz10*dz10; |
191 | rsq20 = dx20*dx20+dy20*dy20+dz20*dz20; |
192 | |
193 | rinv00 = gmx_invsqrt(rsq00)gmx_software_invsqrt(rsq00); |
194 | rinv10 = gmx_invsqrt(rsq10)gmx_software_invsqrt(rsq10); |
195 | rinv20 = gmx_invsqrt(rsq20)gmx_software_invsqrt(rsq20); |
196 | |
197 | rinvsq00 = rinv00*rinv00; |
198 | rinvsq10 = rinv10*rinv10; |
199 | rinvsq20 = rinv20*rinv20; |
200 | |
201 | /* Load parameters for j particles */ |
202 | jq0 = charge[jnr+0]; |
203 | vdwjidx0 = 2*vdwtype[jnr+0]; |
204 | |
205 | /************************** |
206 | * CALCULATE INTERACTIONS * |
207 | **************************/ |
208 | |
209 | r00 = rsq00*rinv00; |
210 | |
211 | qq00 = iq0*jq0; |
212 | c6_00 = vdwparam[vdwioffset0+vdwjidx0]; |
213 | c12_00 = vdwparam[vdwioffset0+vdwjidx0+1]; |
214 | |
215 | /* Calculate table index by multiplying r with table scale and truncate to integer */ |
216 | rt = r00*vftabscale; |
217 | vfitab = rt; |
218 | vfeps = rt-vfitab; |
219 | vfitab = 2*4*vfitab; |
220 | |
221 | /* COULOMB ELECTROSTATICS */ |
222 | velec = qq00*rinv00; |
223 | felec = velec*rinvsq00; |
224 | |
225 | /* CUBIC SPLINE TABLE DISPERSION */ |
226 | vfitab += 0; |
227 | Y = vftab[vfitab]; |
228 | F = vftab[vfitab+1]; |
229 | Geps = vfeps*vftab[vfitab+2]; |
230 | Heps2 = vfeps*vfeps*vftab[vfitab+3]; |
231 | Fp = F+Geps+Heps2; |
232 | VV = Y+vfeps*Fp; |
233 | vvdw6 = c6_00*VV; |
234 | FF = Fp+Geps+2.0*Heps2; |
235 | fvdw6 = c6_00*FF; |
236 | |
237 | /* CUBIC SPLINE TABLE REPULSION */ |
238 | Y = vftab[vfitab+4]; |
239 | F = vftab[vfitab+5]; |
240 | Geps = vfeps*vftab[vfitab+6]; |
241 | Heps2 = vfeps*vfeps*vftab[vfitab+7]; |
242 | Fp = F+Geps+Heps2; |
243 | VV = Y+vfeps*Fp; |
244 | vvdw12 = c12_00*VV; |
245 | FF = Fp+Geps+2.0*Heps2; |
246 | fvdw12 = c12_00*FF; |
247 | vvdw = vvdw12+vvdw6; |
248 | fvdw = -(fvdw6+fvdw12)*vftabscale*rinv00; |
249 | |
250 | /* Update potential sums from outer loop */ |
251 | velecsum += velec; |
252 | vvdwsum += vvdw; |
253 | |
254 | fscal = felec+fvdw; |
255 | |
256 | /* Calculate temporary vectorial force */ |
257 | tx = fscal*dx00; |
258 | ty = fscal*dy00; |
259 | tz = fscal*dz00; |
260 | |
261 | /* Update vectorial force */ |
262 | fix0 += tx; |
263 | fiy0 += ty; |
264 | fiz0 += tz; |
265 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
266 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
267 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
268 | |
269 | /************************** |
270 | * CALCULATE INTERACTIONS * |
271 | **************************/ |
272 | |
273 | qq10 = iq1*jq0; |
274 | |
275 | /* COULOMB ELECTROSTATICS */ |
276 | velec = qq10*rinv10; |
277 | felec = velec*rinvsq10; |
278 | |
279 | /* Update potential sums from outer loop */ |
280 | velecsum += velec; |
281 | |
282 | fscal = felec; |
283 | |
284 | /* Calculate temporary vectorial force */ |
285 | tx = fscal*dx10; |
286 | ty = fscal*dy10; |
287 | tz = fscal*dz10; |
288 | |
289 | /* Update vectorial force */ |
290 | fix1 += tx; |
291 | fiy1 += ty; |
292 | fiz1 += tz; |
293 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
294 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
295 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
296 | |
297 | /************************** |
298 | * CALCULATE INTERACTIONS * |
299 | **************************/ |
300 | |
301 | qq20 = iq2*jq0; |
302 | |
303 | /* COULOMB ELECTROSTATICS */ |
304 | velec = qq20*rinv20; |
305 | felec = velec*rinvsq20; |
306 | |
307 | /* Update potential sums from outer loop */ |
308 | velecsum += velec; |
309 | |
310 | fscal = felec; |
311 | |
312 | /* Calculate temporary vectorial force */ |
313 | tx = fscal*dx20; |
314 | ty = fscal*dy20; |
315 | tz = fscal*dz20; |
316 | |
317 | /* Update vectorial force */ |
318 | fix2 += tx; |
319 | fiy2 += ty; |
320 | fiz2 += tz; |
321 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
322 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
323 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
324 | |
325 | /* Inner loop uses 118 flops */ |
326 | } |
327 | /* End of innermost loop */ |
328 | |
329 | tx = ty = tz = 0; |
330 | f[i_coord_offset+DIM3*0+XX0] += fix0; |
331 | f[i_coord_offset+DIM3*0+YY1] += fiy0; |
332 | f[i_coord_offset+DIM3*0+ZZ2] += fiz0; |
333 | tx += fix0; |
334 | ty += fiy0; |
335 | tz += fiz0; |
336 | f[i_coord_offset+DIM3*1+XX0] += fix1; |
337 | f[i_coord_offset+DIM3*1+YY1] += fiy1; |
338 | f[i_coord_offset+DIM3*1+ZZ2] += fiz1; |
339 | tx += fix1; |
340 | ty += fiy1; |
341 | tz += fiz1; |
342 | f[i_coord_offset+DIM3*2+XX0] += fix2; |
343 | f[i_coord_offset+DIM3*2+YY1] += fiy2; |
344 | f[i_coord_offset+DIM3*2+ZZ2] += fiz2; |
345 | tx += fix2; |
346 | ty += fiy2; |
347 | tz += fiz2; |
348 | fshift[i_shift_offset+XX0] += tx; |
349 | fshift[i_shift_offset+YY1] += ty; |
350 | fshift[i_shift_offset+ZZ2] += tz; |
351 | |
352 | ggid = gid[iidx]; |
353 | /* Update potential energies */ |
354 | kernel_data->energygrp_elec[ggid] += velecsum; |
355 | kernel_data->energygrp_vdw[ggid] += vvdwsum; |
356 | |
357 | /* Increment number of inner iterations */ |
358 | inneriter += j_index_end - j_index_start; |
359 | |
360 | /* Outer loop uses 32 flops */ |
361 | } |
362 | |
363 | /* Increment number of outer iterations */ |
364 | outeriter += nri; |
365 | |
366 | /* Update outer/inner flops */ |
367 | |
368 | inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_VF,outeriter*32 + inneriter*118)(nrnb)->n[eNR_NBKERNEL_ELEC_VDW_W3_VF] += outeriter*32 + inneriter *118; |
369 | } |
370 | /* |
371 | * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_F_c |
372 | * Electrostatics interaction: Coulomb |
373 | * VdW interaction: CubicSplineTable |
374 | * Geometry: Water3-Particle |
375 | * Calculate force/pot: Force |
376 | */ |
377 | void |
378 | nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_F_c |
379 | (t_nblist * gmx_restrict__restrict nlist, |
380 | rvec * gmx_restrict__restrict xx, |
381 | rvec * gmx_restrict__restrict ff, |
382 | t_forcerec * gmx_restrict__restrict fr, |
383 | t_mdatoms * gmx_restrict__restrict mdatoms, |
384 | nb_kernel_data_t gmx_unused__attribute__ ((unused)) * gmx_restrict__restrict kernel_data, |
385 | t_nrnb * gmx_restrict__restrict nrnb) |
386 | { |
387 | int i_shift_offset,i_coord_offset,j_coord_offset; |
388 | int j_index_start,j_index_end; |
389 | int nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter; |
390 | real shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2; |
391 | int *iinr,*jindex,*jjnr,*shiftidx,*gid; |
392 | real *shiftvec,*fshift,*x,*f; |
393 | int vdwioffset0; |
394 | real ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0; |
395 | int vdwioffset1; |
396 | real ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1; |
397 | int vdwioffset2; |
398 | real ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2; |
399 | int vdwjidx0; |
400 | real jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0; |
401 | real dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00; |
402 | real dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10,cexp1_10,cexp2_10; |
403 | real dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20,cexp1_20,cexp2_20; |
404 | real velec,felec,velecsum,facel,crf,krf,krf2; |
405 | real *charge; |
406 | int nvdwtype; |
407 | real rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6; |
408 | int *vdwtype; |
409 | real *vdwparam; |
410 | int vfitab; |
411 | real rt,vfeps,vftabscale,Y,F,Geps,Heps2,Fp,VV,FF; |
412 | real *vftab; |
413 | |
414 | x = xx[0]; |
415 | f = ff[0]; |
416 | |
417 | nri = nlist->nri; |
418 | iinr = nlist->iinr; |
419 | jindex = nlist->jindex; |
420 | jjnr = nlist->jjnr; |
421 | shiftidx = nlist->shift; |
422 | gid = nlist->gid; |
Value stored to 'gid' is never read | |
423 | shiftvec = fr->shift_vec[0]; |
424 | fshift = fr->fshift[0]; |
425 | facel = fr->epsfac; |
426 | charge = mdatoms->chargeA; |
427 | nvdwtype = fr->ntype; |
428 | vdwparam = fr->nbfp; |
429 | vdwtype = mdatoms->typeA; |
430 | |
431 | vftab = kernel_data->table_vdw->data; |
432 | vftabscale = kernel_data->table_vdw->scale; |
433 | |
434 | /* Setup water-specific parameters */ |
435 | inr = nlist->iinr[0]; |
436 | iq0 = facel*charge[inr+0]; |
437 | iq1 = facel*charge[inr+1]; |
438 | iq2 = facel*charge[inr+2]; |
439 | vdwioffset0 = 2*nvdwtype*vdwtype[inr+0]; |
440 | |
441 | outeriter = 0; |
442 | inneriter = 0; |
443 | |
444 | /* Start outer loop over neighborlists */ |
445 | for(iidx=0; iidx<nri; iidx++) |
446 | { |
447 | /* Load shift vector for this list */ |
448 | i_shift_offset = DIM3*shiftidx[iidx]; |
449 | shX = shiftvec[i_shift_offset+XX0]; |
450 | shY = shiftvec[i_shift_offset+YY1]; |
451 | shZ = shiftvec[i_shift_offset+ZZ2]; |
452 | |
453 | /* Load limits for loop over neighbors */ |
454 | j_index_start = jindex[iidx]; |
455 | j_index_end = jindex[iidx+1]; |
456 | |
457 | /* Get outer coordinate index */ |
458 | inr = iinr[iidx]; |
459 | i_coord_offset = DIM3*inr; |
460 | |
461 | /* Load i particle coords and add shift vector */ |
462 | ix0 = shX + x[i_coord_offset+DIM3*0+XX0]; |
463 | iy0 = shY + x[i_coord_offset+DIM3*0+YY1]; |
464 | iz0 = shZ + x[i_coord_offset+DIM3*0+ZZ2]; |
465 | ix1 = shX + x[i_coord_offset+DIM3*1+XX0]; |
466 | iy1 = shY + x[i_coord_offset+DIM3*1+YY1]; |
467 | iz1 = shZ + x[i_coord_offset+DIM3*1+ZZ2]; |
468 | ix2 = shX + x[i_coord_offset+DIM3*2+XX0]; |
469 | iy2 = shY + x[i_coord_offset+DIM3*2+YY1]; |
470 | iz2 = shZ + x[i_coord_offset+DIM3*2+ZZ2]; |
471 | |
472 | fix0 = 0.0; |
473 | fiy0 = 0.0; |
474 | fiz0 = 0.0; |
475 | fix1 = 0.0; |
476 | fiy1 = 0.0; |
477 | fiz1 = 0.0; |
478 | fix2 = 0.0; |
479 | fiy2 = 0.0; |
480 | fiz2 = 0.0; |
481 | |
482 | /* Start inner kernel loop */ |
483 | for(jidx=j_index_start; jidx<j_index_end; jidx++) |
484 | { |
485 | /* Get j neighbor index, and coordinate index */ |
486 | jnr = jjnr[jidx]; |
487 | j_coord_offset = DIM3*jnr; |
488 | |
489 | /* load j atom coordinates */ |
490 | jx0 = x[j_coord_offset+DIM3*0+XX0]; |
491 | jy0 = x[j_coord_offset+DIM3*0+YY1]; |
492 | jz0 = x[j_coord_offset+DIM3*0+ZZ2]; |
493 | |
494 | /* Calculate displacement vector */ |
495 | dx00 = ix0 - jx0; |
496 | dy00 = iy0 - jy0; |
497 | dz00 = iz0 - jz0; |
498 | dx10 = ix1 - jx0; |
499 | dy10 = iy1 - jy0; |
500 | dz10 = iz1 - jz0; |
501 | dx20 = ix2 - jx0; |
502 | dy20 = iy2 - jy0; |
503 | dz20 = iz2 - jz0; |
504 | |
505 | /* Calculate squared distance and things based on it */ |
506 | rsq00 = dx00*dx00+dy00*dy00+dz00*dz00; |
507 | rsq10 = dx10*dx10+dy10*dy10+dz10*dz10; |
508 | rsq20 = dx20*dx20+dy20*dy20+dz20*dz20; |
509 | |
510 | rinv00 = gmx_invsqrt(rsq00)gmx_software_invsqrt(rsq00); |
511 | rinv10 = gmx_invsqrt(rsq10)gmx_software_invsqrt(rsq10); |
512 | rinv20 = gmx_invsqrt(rsq20)gmx_software_invsqrt(rsq20); |
513 | |
514 | rinvsq00 = rinv00*rinv00; |
515 | rinvsq10 = rinv10*rinv10; |
516 | rinvsq20 = rinv20*rinv20; |
517 | |
518 | /* Load parameters for j particles */ |
519 | jq0 = charge[jnr+0]; |
520 | vdwjidx0 = 2*vdwtype[jnr+0]; |
521 | |
522 | /************************** |
523 | * CALCULATE INTERACTIONS * |
524 | **************************/ |
525 | |
526 | r00 = rsq00*rinv00; |
527 | |
528 | qq00 = iq0*jq0; |
529 | c6_00 = vdwparam[vdwioffset0+vdwjidx0]; |
530 | c12_00 = vdwparam[vdwioffset0+vdwjidx0+1]; |
531 | |
532 | /* Calculate table index by multiplying r with table scale and truncate to integer */ |
533 | rt = r00*vftabscale; |
534 | vfitab = rt; |
535 | vfeps = rt-vfitab; |
536 | vfitab = 2*4*vfitab; |
537 | |
538 | /* COULOMB ELECTROSTATICS */ |
539 | velec = qq00*rinv00; |
540 | felec = velec*rinvsq00; |
541 | |
542 | /* CUBIC SPLINE TABLE DISPERSION */ |
543 | vfitab += 0; |
544 | F = vftab[vfitab+1]; |
545 | Geps = vfeps*vftab[vfitab+2]; |
546 | Heps2 = vfeps*vfeps*vftab[vfitab+3]; |
547 | Fp = F+Geps+Heps2; |
548 | FF = Fp+Geps+2.0*Heps2; |
549 | fvdw6 = c6_00*FF; |
550 | |
551 | /* CUBIC SPLINE TABLE REPULSION */ |
552 | F = vftab[vfitab+5]; |
553 | Geps = vfeps*vftab[vfitab+6]; |
554 | Heps2 = vfeps*vfeps*vftab[vfitab+7]; |
555 | Fp = F+Geps+Heps2; |
556 | FF = Fp+Geps+2.0*Heps2; |
557 | fvdw12 = c12_00*FF; |
558 | fvdw = -(fvdw6+fvdw12)*vftabscale*rinv00; |
559 | |
560 | fscal = felec+fvdw; |
561 | |
562 | /* Calculate temporary vectorial force */ |
563 | tx = fscal*dx00; |
564 | ty = fscal*dy00; |
565 | tz = fscal*dz00; |
566 | |
567 | /* Update vectorial force */ |
568 | fix0 += tx; |
569 | fiy0 += ty; |
570 | fiz0 += tz; |
571 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
572 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
573 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
574 | |
575 | /************************** |
576 | * CALCULATE INTERACTIONS * |
577 | **************************/ |
578 | |
579 | qq10 = iq1*jq0; |
580 | |
581 | /* COULOMB ELECTROSTATICS */ |
582 | velec = qq10*rinv10; |
583 | felec = velec*rinvsq10; |
584 | |
585 | fscal = felec; |
586 | |
587 | /* Calculate temporary vectorial force */ |
588 | tx = fscal*dx10; |
589 | ty = fscal*dy10; |
590 | tz = fscal*dz10; |
591 | |
592 | /* Update vectorial force */ |
593 | fix1 += tx; |
594 | fiy1 += ty; |
595 | fiz1 += tz; |
596 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
597 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
598 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
599 | |
600 | /************************** |
601 | * CALCULATE INTERACTIONS * |
602 | **************************/ |
603 | |
604 | qq20 = iq2*jq0; |
605 | |
606 | /* COULOMB ELECTROSTATICS */ |
607 | velec = qq20*rinv20; |
608 | felec = velec*rinvsq20; |
609 | |
610 | fscal = felec; |
611 | |
612 | /* Calculate temporary vectorial force */ |
613 | tx = fscal*dx20; |
614 | ty = fscal*dy20; |
615 | tz = fscal*dz20; |
616 | |
617 | /* Update vectorial force */ |
618 | fix2 += tx; |
619 | fiy2 += ty; |
620 | fiz2 += tz; |
621 | f[j_coord_offset+DIM3*0+XX0] -= tx; |
622 | f[j_coord_offset+DIM3*0+YY1] -= ty; |
623 | f[j_coord_offset+DIM3*0+ZZ2] -= tz; |
624 | |
625 | /* Inner loop uses 107 flops */ |
626 | } |
627 | /* End of innermost loop */ |
628 | |
629 | tx = ty = tz = 0; |
630 | f[i_coord_offset+DIM3*0+XX0] += fix0; |
631 | f[i_coord_offset+DIM3*0+YY1] += fiy0; |
632 | f[i_coord_offset+DIM3*0+ZZ2] += fiz0; |
633 | tx += fix0; |
634 | ty += fiy0; |
635 | tz += fiz0; |
636 | f[i_coord_offset+DIM3*1+XX0] += fix1; |
637 | f[i_coord_offset+DIM3*1+YY1] += fiy1; |
638 | f[i_coord_offset+DIM3*1+ZZ2] += fiz1; |
639 | tx += fix1; |
640 | ty += fiy1; |
641 | tz += fiz1; |
642 | f[i_coord_offset+DIM3*2+XX0] += fix2; |
643 | f[i_coord_offset+DIM3*2+YY1] += fiy2; |
644 | f[i_coord_offset+DIM3*2+ZZ2] += fiz2; |
645 | tx += fix2; |
646 | ty += fiy2; |
647 | tz += fiz2; |
648 | fshift[i_shift_offset+XX0] += tx; |
649 | fshift[i_shift_offset+YY1] += ty; |
650 | fshift[i_shift_offset+ZZ2] += tz; |
651 | |
652 | /* Increment number of inner iterations */ |
653 | inneriter += j_index_end - j_index_start; |
654 | |
655 | /* Outer loop uses 30 flops */ |
656 | } |
657 | |
658 | /* Increment number of outer iterations */ |
659 | outeriter += nri; |
660 | |
661 | /* Update outer/inner flops */ |
662 | |
663 | inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_F,outeriter*30 + inneriter*107)(nrnb)->n[eNR_NBKERNEL_ELEC_VDW_W3_F] += outeriter*30 + inneriter *107; |
664 | } |