BioD PNPI Git Repos - alexxy/gromacs.git/search

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2021-11-03	Mark Abraham	Improve MessageStringCollector	commit \| commitdiff \| tree
2021-11-03	Andrey Alekseenko	Fix random typos	commit \| commitdiff \| tree
2021-11-03	Joe Jordan	Remove unused thole polarization rfac parameter	commit \| commitdiff \| tree
2021-11-02	Mark Abraham	Echo the path to and version of CMake for CI builds	commit \| commitdiff \| tree
2021-11-02	Berk Hess	Add second LINCS atom update task	commit \| commitdiff \| tree
2021-11-01	Eliane Briand	Add DSSP v4 support to do_dssp	commit \| commitdiff \| tree
2021-11-01	Szilárd Páll	Fix hipSYCL build with CUDA target	commit \| commitdiff \| tree
2021-10-29	Magnus Lundborg	Allow TNG to TNG file conversion without time per frame...	commit \| commitdiff \| tree
2021-10-29	Alan Gray	Simplify GPU force reduction conditionals	commit \| commitdiff \| tree
2021-10-29	Berk Hess	Reimplement constant acceleration groups	commit \| commitdiff \| tree
2021-10-27	Berk Hess	Add Oliver Fleetwood as a contributor	commit \| commitdiff \| tree
2021-10-27	Joe Jordan	Throw on failure in gmx_file_rename	commit \| commitdiff \| tree
2021-10-26	Alan Gray	Insert barrier after each GPU halo test	commit \| commitdiff \| tree
2021-10-26	Mark Abraham	Minor improvements to gmx wham output	commit \| commitdiff \| tree
2021-10-26	Mark Abraham	Remove/replace many mentions of Jenkins	commit \| commitdiff \| tree
2021-10-22	Magnus Lundborg	Avoid comparing Simd types to real 0 when making masks...	commit \| commitdiff \| tree
2021-10-21	Dmitry Morozov	Added pkg-config detection of libcp2k #3172	commit \| commitdiff \| tree
2021-10-21	Mark Abraham	Support clang 13 in CI	commit \| commitdiff \| tree
2021-10-21	Joe Jordan	Expand signatures for nblib listed forces calculator	commit \| commitdiff \| tree
2021-10-21	Berk Hess	Add lambda state to dhdl.xvg with AWH fep	commit \| commitdiff \| tree
2021-10-20	Andrey Alekseenko	Update CI containers to oneAPI 2021.4.0	commit \| commitdiff \| tree
2021-10-19	Roland Schulz	Fix warnings with Intel 2021.4	commit \| commitdiff \| tree
2021-10-18	Andrey Alekseenko	Enable kernel compiler cache for SYCL DPC++	commit \| commitdiff \| tree
2021-10-15	M. Eric Irrgang	Require pybind 2.6 from environment for gmxapi Python...	commit \| commitdiff \| tree
2021-10-15	Andrey Alekseenko	Resolve "SYCL + DPCPP cmake config fails in gmxManageFFTLibr...	commit \| commitdiff \| tree
2021-10-15	Mark Abraham	Make failure to find CUDA-aware MPI work correctly.	commit \| commitdiff \| tree
2021-10-14	Alan Gray	Pipeline GPU PME Spline/Spread with PP Comms	commit \| commitdiff \| tree
2021-10-13	Berk Hess	Made gromacs work again without MPI	commit \| commitdiff \| tree
2021-10-11	M. Eric Irrgang	Remove broken CMake option from python_packaging Dockerfile.	commit \| commitdiff \| tree
2021-10-11	Alan Gray	Bug fix for irregular replex steps with GPU update	commit \| commitdiff \| tree
2021-10-09	Andrey Alekseenko	SYCL: Reduce local memory usage of LINCS kernel	commit \| commitdiff \| tree
2021-10-09	M. Eric Irrgang	Normalize testutils use in `api/` directory.	commit \| commitdiff \| tree
2021-10-08	Mark Abraham	First 2022 beta release	commit \| commitdiff \| tree
2021-10-07	Joe Jordan	Introduce nblib nonbonded force calculator impl class	commit \| commitdiff \| tree
2021-10-06	Andrey Alekseenko	SYCL: Add missing barrier to NBNXM energy reduction	commit \| commitdiff \| tree
2021-10-06	Mark Abraham	Don't require g++ for clang to compile	commit \| commitdiff \| tree
2021-10-06	Artem Zhmurov	Add missing synchronization calls in CUDA version of...	commit \| commitdiff \| tree
2021-10-06	Alan Gray	Rework GPU halo and state propagator streams and dependencie...	commit \| commitdiff \| tree
2021-10-01	Andrey Alekseenko	SYCL: 3D FFT using oneMKL	commit \| commitdiff \| tree
2021-09-29	Artem Zhmurov	Use reference data in constraints tests	commit \| commitdiff \| tree
2021-09-28	Mark Abraham	Build internal muparser more simply	commit \| commitdiff \| tree
2021-09-28	Gaurav Garg	Add HeFFTe based FFT backend	commit \| commitdiff \| tree
2021-09-28	Dmitry Morozov	Implementation of QMMM, QMMMSimulationParameterSetup...	commit \| commitdiff \| tree
2021-09-25	Berk Hess	Replace DOMAINDECOMP macro by a renamed function	commit \| commitdiff \| tree
2021-09-24	Gaurav Garg	Fix compilation issues with master branch when OpenMPI...	commit \| commitdiff \| tree
2021-09-24	Berk Hess	Also use DD partitioning in serial	commit \| commitdiff \| tree
2021-09-24	Dmitry Morozov	Added QMMMOptions class for managing mdp and KVT I/O	commit \| commitdiff \| tree
2021-09-23	ejjordan	Make CpuPpLongRangeNonbondeds class	commit \| commitdiff \| tree
2021-09-22	M. Eric Irrgang	Update MPI dependence for `gmxapi` target.	commit \| commitdiff \| tree
2021-09-22	Gaurav Garg	Add heffte package in gcc-7-cuda-11.0 container	commit \| commitdiff \| tree
2021-09-22	Pascal Merz	Introduce expanded ensemble in modular simulator	commit \| commitdiff \| tree
2021-09-21	Mark Abraham	Find MPI quietly on second pass	commit \| commitdiff \| tree
2021-09-20	Berk Hess	Add Ewald coefficients to nonbonded fep test	commit \| commitdiff \| tree
2021-09-16	Mark Abraham	Eliminate GMX_MIMIC symbol from source code	commit \| commitdiff \| tree
2021-09-15	Mark Abraham	Make static selections of large index groups work.	commit \| commitdiff \| tree
2021-09-14	Andrey Alekseenko	Add advanced event consumption accounting to GpuEventSynchro...	commit \| commitdiff \| tree
2021-09-14	Paul Bauer	Reenable GPUs in CI	commit \| commitdiff \| tree
2021-09-14	Paul Bauer	Revert "Temporarily lift requirement to detect GPUs...	commit \| commitdiff \| tree
2021-09-14	Dmitry Morozov	Added class for making QMMM-related topology modifications	commit \| commitdiff \| tree
2021-09-13	M. Eric Irrgang	Simplify MPI implementation checks.	commit \| commitdiff \| tree
2021-09-13	Berk Hess	Add release notes for transformation pull coordinate	commit \| commitdiff \| tree
2021-09-13	Dmitry Morozov	Added CP2K related options to CMake files	commit \| commitdiff \| tree
2021-09-13	M. Eric Irrgang	Allow flexible requirements for gmxManageMPI.cmake	commit \| commitdiff \| tree
2021-09-10	Mark Abraham	Fix GMX_VERSION_STRING_OF_FORK with REGRESSIONTEST_DOWNLOAD	commit \| commitdiff \| tree
2021-09-09	Andrey Alekseenko	Enable GPU PME unit tests	commit \| commitdiff \| tree
2021-09-07	Mark Abraham	Replace ResidueTypeMap with std::unordered_map	commit \| commitdiff \| tree
2021-09-02	Berk Hess	Minor clean-up and optimization in DD topology	commit \| commitdiff \| tree
2021-09-01	Mark Abraham	Use better data structure to implement ResidueType	commit \| commitdiff \| tree
2021-08-31	Paul Bauer	Revert "Revert "Add muparser and CMake handling""	commit \| commitdiff \| tree
2021-08-28	Andrey Alekseenko	SYCL: Fully switch to atomic_ref	commit \| commitdiff \| tree
2021-08-27	Gaurav Garg	Disable DLB if GPU direct communication Halo exchange...	commit \| commitdiff \| tree
2021-08-26	M. Eric Irrgang	Document Status labels for issues.	commit \| commitdiff \| tree
2021-08-26	Andrey Alekseenko	Add missing Doxygen for SYCL functions and some others	commit \| commitdiff \| tree
2021-08-25	Berk Hess	Enable atom reordering in WholeMoleculeTransform	commit \| commitdiff \| tree
2021-08-21	Mark Abraham	Use better data structures in gmx chi	commit \| commitdiff \| tree
2021-08-20	Mark Abraham	Add tests for gmx chi	commit \| commitdiff \| tree
2021-08-19	Mark Abraham	Restrict scope of step and step_rel	commit \| commitdiff \| tree
2021-08-18	Sebastian Wingbermuhle	Prepares for the branch GROMACS 2021.4	commit \| commitdiff \| tree
2021-08-18	Sebastian Wingbermuhle	Prepares for the GROMACS 2021.3 release	commit \| commitdiff \| tree
2021-08-18	Mark Abraham	Ensure restart with update groups always works	commit \| commitdiff \| tree
2021-08-18	Berk Hess	Fix mdrun -ddorder pp_pme	commit \| commitdiff \| tree
2021-08-17	Andrey Alekseenko	Add basic tests for GpuEventSynchronizer	commit \| commitdiff \| tree
2021-08-17	Artem Zhmurov	Move the ownership of the xUpdatedOnDevice event to...	commit \| commitdiff \| tree
2021-08-17	Andrey Alekseenko	Random cosmetic fixes	commit \| commitdiff \| tree
2021-08-16	Artem Zhmurov	Add common header to GpuEventSynchronizer	commit \| commitdiff \| tree
2021-08-16	M. Eric Irrgang	Updates for updated Python version requirement.	commit \| commitdiff \| tree
2021-08-16	Berk Hess	grompp no longer modifies nstcomm	commit \| commitdiff \| tree
2021-08-16	Joe Jordan	Rework nblib kernel checks and setup code	commit \| commitdiff \| tree
2021-08-13	Andrey Alekseenko	Remove duplicate waiting for coordinates	commit \| commitdiff \| tree
2021-08-12	Dmitry Morozov	Added class for generating standard CP2K input	commit \| commitdiff \| tree
2021-08-12	ejjordan	Nblib doc fixes	commit \| commitdiff \| tree
2021-08-09	M. Eric Irrgang	Fix GMX_PYTHON_PACKAGE option.	commit \| commitdiff \| tree
2021-08-09	M. Eric Irrgang	Minor clean-up to sample_restraint tests.	commit \| commitdiff \| tree
2021-08-06	M. Eric Irrgang	Add a helpful dev docs link.	commit \| commitdiff \| tree
2021-08-06	M. Eric Irrgang	Add a LICENSE file for gmxapi.	commit \| commitdiff \| tree
2021-08-03	Mark Abraham	Add GPU 3D FFT tests	commit \| commitdiff \| tree
2021-08-03	Andrey Alekseenko	Remove StatePropagatorDataGpu::getVelocitiesReadyOnDeviceEvent	commit \| commitdiff \| tree
2021-08-01	Alan Gray	Remove MPI comm from GPU PME-PP force transfer initiation	commit \| commitdiff \| tree
2021-07-30	Mark Abraham	Simplify short-circuit logic in grompp	commit \| commitdiff \| tree
2021-07-29	Mark Abraham	Check nvcc accepts flags before using them	commit \| commitdiff \| tree
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