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Merge branch release-5-1
2015-07-24 Mark AbrahamMerge branch release-5-1
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2015-07-19 Mark AbrahamUpdate advice about grompp -t
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2015-07-14 Mark AbrahamConverted gmxpreprocess to compile as C++
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2015-07-08 Mark AbrahamGive bTypePerturbed a valid initial value
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2015-07-08 Mark AbrahamFix grompp .edr IO estimate for free-energy calcs
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2015-07-06 Mark AbrahamFirst 5.1 release candidate
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2015-07-03 Mark AbrahamFix ThreadMPI GPU assumptions
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2015-06-30 Mark AbrahamDocument how to add and use NVML support
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2015-06-30 Mark AbrahamAvoid GPU data race also with OpenCL
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2015-06-30 Mark AbrahamAdd support for flushing WDDM queue
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2015-06-29 Mark AbrahamMerge "Merge branch release-5-0"
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2015-06-29 Mark AbrahamMerge branch release-5-0
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2015-06-29 Mark AbrahamDocumented build types in developer guide
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2015-06-29 Mark AbrahamMerge release-4-6 into release-5-0
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2015-06-29 Mark AbrahamAdd MSAN build type
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2015-06-29 Mark AbrahamFix all use of nbnxn_simd.h
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2015-06-27 Mark AbrahamMerge release-5-0 into master
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2015-06-26 Mark AbrahamMerge release-4-6 into release-5-0
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2015-06-26 Mark AbrahamFix mdrun -confout sometimes affecting final .edr frame
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2015-06-25 Mark AbrahamMerge "Merge release-5-0 into master"
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2015-06-25 Mark AbrahamMerge release-5-0 into master
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2015-06-24 Mark AbrahamMerge release-4-6 into release-5-0
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2015-06-18 Mark AbrahamFix typo in GMX_BUILD_OWN_FFTW message
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2015-06-16 Mark AbrahamStop people installing into the build tree
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2015-06-16 Mark AbrahamMove code for managing mdrun -cpi and -append
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2015-06-16 Mark AbrahamFix pairs_nb not recognized as part of moleculetype
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2015-06-16 Mark AbrahamAdd unit tests for ArrayRef
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2015-06-12 Mark AbrahamFix commandline test data
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2015-06-11 Mark AbrahamMerge "Merge branch release-4-6 into release-5-0" into...
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2015-06-11 Mark AbrahamHandle timing better in Jenkins
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2015-06-11 Mark AbrahamClean up vsite interaction clean-up code
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2015-06-09 Mark AbrahamDocument limitations of trjconv -dump
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2015-06-09 Mark AbrahamMerge branch release-4-6 into release-5-0
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2015-06-05 Mark AbrahamRemove gmx_simd_check_and_reset_overflow
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2015-06-04 Mark AbrahamFix naming from "Gromacs" to "GROMACS"
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2015-05-27 Mark AbrahamFix warnings from GCC 5
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2015-05-26 Mark AbrahamAvoid possible floating-point exception
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2015-05-26 Mark AbrahamConvert ewald module to C++
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2015-05-26 Mark AbrahamFix use of hard-coded temporary filename
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2015-05-23 Mark AbrahamFix misuse of gmx_simd_check_and_reset_overflow
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2015-05-21 Mark AbrahamAdd integration test for empty domain
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2015-05-19 Mark AbrahamAdd checks for correct use of SIMD headers.
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2015-05-19 Mark AbrahamRefactor FFTW setup
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2015-05-17 Mark AbrahamMerge branch origin/release-5-0
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2015-05-16 Mark AbrahamSuppress GCC5 warnings with internal Boost
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2015-05-14 Mark AbrahamFix own-FFTW build
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2015-05-13 Mark AbrahamVersion bumps after new release
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2015-05-13 Mark AbrahamVersion 5.0.5
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2015-05-12 Mark AbrahamFix uninitialized fields in grompp t_state
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2015-05-11 Mark AbrahamWork around gcc 5 warnings with Google Test
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2015-05-10 Mark AbrahamMerge "Merge branch release-5-0"
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2015-05-09 Mark AbrahamMerge branch release-5-0
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2015-05-06 Mark AbrahamFixed recently-introduced couple-lambda warning message
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2015-05-06 Mark AbrahamFix SIMD unit tests on BG/Q
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2015-05-05 Mark AbrahamMerge release-4-6 into release-5-0
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2015-04-30 Mark AbrahamMove GPU implementation to new interface
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2015-04-28 Mark AbrahamAdd application-clock NVML-based support for Quadro...
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2015-04-27 Mark AbrahamClean up remnants in mdrun
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2015-04-24 Mark AbrahamAdd developer docs for new documentation infrastructure
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2015-04-23 Mark AbrahamFirst beta release of 5.1
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2015-04-21 Mark AbrahamMerge "Merge branch release-5-0"
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2015-04-17 Mark AbrahamAdd comment about Andersen themostat and constraints
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2015-04-09 Mark AbrahamMerge branch release-5-0
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2015-04-08 Mark AbrahamUpdate mdrun Doxygen
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2015-04-08 Mark AbrahamMade pme_work_t opaque
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2015-04-01 Mark AbrahamInitialize n_tricvec field of t_pbc always
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2015-03-30 Mark AbrahamImproved man-page machinery
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2015-03-19 Mark AbrahamMade error message more generic
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2015-03-19 Mark AbrahamExtend Force sub-counters
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2015-03-13 Mark AbrahamMade GPU warning messages more user friendly
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2015-03-06 Mark AbrahamRestore wallcycle subcounter name to "Bonded F"
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2015-03-05 Mark AbrahamFix Andersen thermostats
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2015-03-03 Mark AbrahamRe-implement gmx tune_pme -cpi
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2015-03-03 Mark AbrahamMove mdrun signalling code
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2015-03-03 Mark AbrahamAdd test that plain multi-simulation works
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2015-03-02 Mark AbrahamRun replica-exchange tests with MPI enabled
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2015-03-02 Mark AbrahamAdd infrastructure for running MPI integration tests
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2015-02-25 Mark AbrahamNew and reorganized documentation
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2015-02-25 Mark AbrahamAdd content to user guide
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2015-02-25 Mark AbrahamSplit pme.c into multiple files
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2015-02-25 Mark AbrahamAdd mdp-options to user guide
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2015-02-18 Mark AbrahamReenable SIMD for R-B dihedrals
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2015-02-13 Mark AbrahamFix mdrun-only build
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2015-02-13 Mark AbrahamImplemented documentation with sphinx
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2015-02-04 Mark AbrahamImplement user guide
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2015-02-02 Mark AbrahamMerge branch release-5-0
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2015-02-02 Mark AbrahamAvoid near-silent generation of zero energies
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2015-02-02 Mark AbrahamFix use of simd.h
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2015-01-23 Mark AbrahamChange some listed-forces headers to be library-only
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2015-01-23 Mark AbrahamUpdate FindCUDA work-around
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2015-01-20 Mark AbrahamRemoved gmx_header_config.h
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2015-01-16 Mark AbrahamFix BlueGene/Q build with recent CMake
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2015-01-15 Mark AbrahamMerge branch release-5-0
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2015-01-14 Mark AbrahamFix and suppress warnings on BlueGene/Q
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2015-01-14 Mark AbrahamRefactor OpenMP initialization
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2015-01-14 Mark AbrahamRemove temporary symlinks from pre-5.0 tool names
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2015-01-09 Mark AbrahamRemove mdrun -testverlet
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2015-01-08 Mark AbrahamHandle ivec* correctly in DD error message
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2015-01-08 Mark AbrahamFix floating-point exception
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2014-12-16 Mark AbrahamMove code to prepare for GPU interface rework
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