Forward declare ArrayRef more and inlcude basedefinitions where needed

Forward declare ArrayRef more and inlcude basedefinitions where needed

Remove many includes of ArrayRef that can be forward declared. Also
remove includes of basedefinitions in many headers. In some cases
removing basedefinitinos meant also changing gmx_bool to bool.
Note that no change to source files is needed, apart from possibly
adding the basedefintions include, because gmx_bool uses true and
false under the hood.