Merge release-5-0 into master
authorRoland Schulz <roland@utk.edu>
Wed, 3 Sep 2014 17:47:25 +0000 (13:47 -0400)
committerRoland Schulz <roland@utk.edu>
Wed, 3 Sep 2014 22:10:20 +0000 (18:10 -0400)
commita786c5005ab7b72a13b5c55e9f98d750670b2e87
treef4d0c3601a504aba9f14081fb886f8cb6f77e998
parentf62a0e6795372dba0b6dc851fa736980bfd2195c
parentaf78f4c5ce6924e1b7ee6fa65fa0b462df4d76a5
Merge release-5-0 into master

Conflicts:
cmake/gmxDetectSimd.cmake
cmake/gmxSetBuildInformation.cmake
share/template/cmake/FindGROMACS.cmakein
change superseded in master
src/gromacs/fileio/mdoutf.h
src/gromacs/gmxlib/network.c
src/gromacs/gmxlib/oenv.cpp
src/gromacs/legacyheaders/types/simple.h
change applied to
src/gromacs/utility/real.h

Change-Id: Ib076dc9894f0d590a243a7504c3db7daf2f72beb
33 files changed:
CMakeLists.txt
cmake/gmxCFlags.cmake
cmake/gmxDetectSimd.cmake
cmake/gmxSetBuildInformation.cmake
docs/install-guide/install-guide.md
src/config.h.cmakein
src/gromacs/CMakeLists.txt
src/gromacs/fileio/mdoutf.c
src/gromacs/fileio/mdoutf.h
src/gromacs/fileio/tngio.cpp
src/gromacs/fileio/tngio_for_tools.cpp
src/gromacs/fileio/trajectory_writing.c
src/gromacs/fileio/trajectory_writing.h
src/gromacs/gmxana/gmx_bar.c
src/gromacs/gmxana/gmx_covar.c
src/gromacs/gmxana/gmx_wham.cpp
src/gromacs/gmxana/legacytests/gmx_traj_tests.cpp
src/gromacs/gmxlib/copyrite.cpp
src/gromacs/gmxlib/oenv.cpp
src/gromacs/gmxpreprocess/calc_verletbuf.c
src/gromacs/legacyheaders/sim_util.h
src/gromacs/legacyheaders/vsite.h
src/gromacs/mdlib/domdec.c
src/gromacs/mdlib/minimize.c
src/gromacs/mdlib/pme.c
src/gromacs/mdlib/sim_util.c
src/gromacs/mdlib/vsite.c
src/gromacs/utility/basenetwork.cpp
src/gromacs/utility/real.h
src/gromacs/utility/smalloc.c
src/programs/mdrun/md.cpp
src/programs/mdrun/tests/rerun.cpp
src/testutils/tests/testasserts_tests.cpp