Merge release-4-6 into master
authorRoland Schulz <roland@utk.edu>
Wed, 12 Dec 2012 23:07:08 +0000 (18:07 -0500)
committerRoland Schulz <roland@utk.edu>
Wed, 12 Dec 2012 23:07:08 +0000 (18:07 -0500)
commit4f6fedf52af7d5a57d56680b0086ed484e32b243
treebc959f3d87e1f5038d3b35b1f53948620c7542dd
parent264847f5eaf7a8bde73d73e84ec06ed2e5c13a20
parentc5706f32cc2363c50b61ec0a207bf93dc20220a1
Merge release-4-6 into master

Conflicts:
CMakeLists.txt (applied OpenMM changes to new location)
Deleted:
src/gromacs/gmxlib/nonbonded/nb_kernel_adress_c/nb_kernel[0-9]*
src/gromacs/gmxlib/nonbonded/nb_kernel_adress_c/nb_kernel_c_adress.c
src/gromacs/gmxlib/nonbonded/nb_kernel_adress_c/nb_kernel_c_adress.h
Trivial:
src/gromacs/legacyheaders/network.h
src/gromacs/mdlib/adress.c
visibility.h not needed for master yet:
src/gromacs/legacyheaders/types/ifunc.h
src/gromacs/legacyheaders/types/iteratedconstraints.h
src/gromacs/legacyheaders/types/nlistheuristics.h

This commit reverts e6cd064af2032c (Copyright). Will be done by Mark after 4.6
release using the script.

Change-Id: Id7371c4a727213159c1c481d300c5b5bd4e290b4
47 files changed:
CMakeLists.txt
cmake/FindFFTW.cmake
cmake/ThreadMPI.cmake
cmake/gmxManageGPU.cmake
cmake/gmxManageNvccConfig.cmake
src/gromacs/gmxlib/gmx_detect_hardware.c
src/gromacs/gmxlib/gmx_omp_nthreads.c
src/gromacs/gmxlib/ifunc.c
src/gromacs/gmxlib/network.c
src/gromacs/gmxlib/nonbonded/nb_generic_adress.c
src/gromacs/gmxlib/nonbonded/nb_generic_adress.h
src/gromacs/gmxlib/nonbonded/nb_kernel_adress_c/make_nb_kernel_adress_c.py
src/gromacs/gmxlib/nonbonded/nb_kernel_adress_c/nb_kernel_adress_template_c.pre
src/gromacs/gmxlib/nonbonded/nonbonded.c
src/gromacs/gmxlib/tpxio.c
src/gromacs/gmxpreprocess/readir.c
src/gromacs/legacyheaders/network.h
src/gromacs/legacyheaders/types/commrec.h
src/gromacs/legacyheaders/types/enums.h
src/gromacs/legacyheaders/types/idef.h
src/gromacs/legacyheaders/types/mdatom.h
src/gromacs/legacyheaders/types/nblist.h
src/gromacs/legacyheaders/types/nbnxn_pairlist.h
src/gromacs/mdlib/adress.c
src/gromacs/mdlib/domdec.c
src/gromacs/mdlib/ebin.c
src/gromacs/mdlib/forcerec.c
src/gromacs/mdlib/md_support.c
src/gromacs/mdlib/mdatom.c
src/gromacs/mdlib/mdebin.c
src/gromacs/mdlib/nbnxn_atomdata.c
src/gromacs/mdlib/nbnxn_internal.h
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.c
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.h
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.c
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.c
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_x86_simd128.c
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_x86_simd256.c
src/gromacs/mdlib/nbnxn_search.c
src/gromacs/mdlib/nbnxn_search.h
src/gromacs/mdlib/ns.c
src/gromacs/mdlib/stat.c
src/gromacs/mdlib/vsite.c
src/gromacs/mdlib/wnblist.c
src/programs/mdrun/runner.c
src/tools/gmx_hbond.c
src/tools/gmx_membed.c