BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Kevin Boyd <kevin44boyd@gmail.com>
	Wed, 29 Jul 2020 11:42:59 +0000 (11:42 +0000)
committer	Paul Bauer <paul.bauer.q@gmail.com>
	Wed, 29 Jul 2020 11:42:59 +0000 (11:42 +0000)
commit	06c0d798af68736a62d1930b6fd661398bb1154e
tree	8b29d052d267952fc2c6b4b4b17092454f9445b3	tree \| snapshot
parent	49e9b6b20808ff704597a9089f6f50d3451b24aa	commit \| diff

Fix undefined behavior flagged by UBSAN

Running under the UBSAN sanitizer pointed out a bunch of undefined
behavior - most of them were harmless issues in rarely taken branches,
but should still be avoided.

22 files changed:

CMakeLists.txt		diff \| blob \| history
admin/gitlab-ci/gromacs.gitlab-ci.yml		diff \| blob \| history
admin/ubsan-suppressions.txt	[new file with mode: 0644]	blob
cmake/gmxBuildTypeUBSAN.cmake	[new file with mode: 0644]	blob
src/config.h.cmakein		diff \| blob \| history
src/gromacs/applied_forces/tests/electricfield.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_topology.cpp		diff \| blob \| history
src/gromacs/fileio/xdrd.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/gpp_nextnb.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/pdb2gmx.cpp		diff \| blob \| history
src/gromacs/mdrun/md.cpp		diff \| blob \| history
src/gromacs/mdrun/minimize.cpp		diff \| blob \| history
src/gromacs/mdrun/rerun.cpp		diff \| blob \| history
src/gromacs/mdrun/runner.cpp		diff \| blob \| history
src/gromacs/mdrunutility/threadaffinity.cpp		diff \| blob \| history
src/gromacs/nbnxm/pairlist.cpp		diff \| blob \| history
src/gromacs/onlinehelp/tests/helpwritercontext.cpp		diff \| blob \| history
src/gromacs/selection/indexutil.cpp		diff \| blob \| history
src/gromacs/selection/parsetree.cpp		diff \| blob \| history
src/gromacs/selection/sm_same.cpp		diff \| blob \| history
src/gromacs/utility/arrayref.h		diff \| blob \| history
src/gromacs/utility/loggerbuilder.h		diff \| blob \| history

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