BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Roland Schulz <roland.schulz@intel.com>
	Sat, 2 Feb 2019 18:05:23 +0000 (10:05 -0800)
committer	Mark Abraham <mark.j.abraham@gmail.com>
	Mon, 4 Feb 2019 11:40:53 +0000 (12:40 +0100)
commit	90aa21a73ccf42dda058d3dd3278f9cdcab2a50f
tree	18bfe84653b1040016470734135cc28517ae8196	tree \| snapshot
parent	7c8933ad8ab74df60d607fcfdb2fa4852bac9b87	commit \| diff

Rename all source files from - to _ for consistency.

Refs #2839

Change-Id: I3a1af667b2b266b1fd65586445b5e7a8a1b6b618

244 files changed:

docs/dev-manual/build-system.rst		diff \| blob \| history
docs/dev-manual/gmxtree.rst		diff \| blob \| history
docs/dev-manual/naming.rst		diff \| blob \| history
docs/doxygen/gmxtree.py		diff \| blob \| history
docs/doxygen/lib/simd.md		diff \| blob \| history
docs/doxygen/suppressions.txt		diff \| blob \| history
src/api/cpp/context.cpp		diff \| blob \| history
src/api/cpp/context_impl.h	[moved from src/api/cpp/context-impl.h with 98% similarity]	diff \| blob \| history
src/api/cpp/md.cpp		diff \| blob \| history
src/api/cpp/md_impl.h	[moved from src/api/cpp/md-impl.h with 97% similarity]	diff \| blob \| history
src/api/cpp/mdsignals.h		diff \| blob \| history
src/api/cpp/session.cpp		diff \| blob \| history
src/api/cpp/session_impl.h	[moved from src/api/cpp/session-impl.h with 98% similarity]	diff \| blob \| history
src/api/cpp/system.cpp		diff \| blob \| history
src/api/cpp/system_impl.h	[moved from src/api/cpp/system-impl.h with 97% similarity]	diff \| blob \| history
src/api/cpp/workflow.cpp		diff \| blob \| history
src/api/cpp/workflow/tests/workflow.cpp		diff \| blob \| history
src/api/cpp/workflow_impl.h	[moved from src/api/cpp/workflow-impl.h with 97% similarity]	diff \| blob \| history
src/gromacs/CMakeLists.txt		diff \| blob \| history
src/gromacs/applied_forces/CMakeLists.txt	[moved from src/gromacs/applied-forces/CMakeLists.txt with 95% similarity]	diff \| blob \| history
src/gromacs/applied_forces/electricfield.cpp	[moved from src/gromacs/applied-forces/electricfield.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/applied_forces/electricfield.h	[moved from src/gromacs/applied-forces/electricfield.h with 97% similarity]	diff \| blob \| history
src/gromacs/applied_forces/tests/CMakeLists.txt	[moved from src/gromacs/applied-forces/tests/CMakeLists.txt with 92% similarity]	diff \| blob \| history
src/gromacs/applied_forces/tests/electricfield.cpp	[moved from src/gromacs/applied-forces/tests/electricfield.cpp with 97% similarity]	diff \| blob \| history
src/gromacs/awh/awh.cpp		diff \| blob \| history
src/gromacs/awh/bias.cpp		diff \| blob \| history
src/gromacs/awh/biasparams.cpp		diff \| blob \| history
src/gromacs/awh/biassharing.cpp		diff \| blob \| history
src/gromacs/awh/biasstate.cpp		diff \| blob \| history
src/gromacs/awh/biaswriter.cpp		diff \| blob \| history
src/gromacs/awh/coordstate.cpp		diff \| blob \| history
src/gromacs/awh/correlationhistory.cpp		diff \| blob \| history
src/gromacs/awh/grid.cpp		diff \| blob \| history
src/gromacs/awh/histogramsize.cpp		diff \| blob \| history
src/gromacs/awh/pointstate.h		diff \| blob \| history
src/gromacs/awh/read_params.cpp	[moved from src/gromacs/awh/read-params.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/awh/read_params.h	[moved from src/gromacs/awh/read-params.h with 97% similarity]	diff \| blob \| history
src/gromacs/awh/tests/bias.cpp		diff \| blob \| history
src/gromacs/awh/tests/biasstate.cpp		diff \| blob \| history
src/gromacs/awh/tests/grid.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpmodule.h		diff \| blob \| history
src/gromacs/commandline/cmdlinemodulemanager.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlinemodulemanager_impl.h	[moved from src/gromacs/commandline/cmdlinemodulemanager-impl.h with 98% similarity]	diff \| blob \| history
src/gromacs/domdec/domdec.cpp		diff \| blob \| history
src/gromacs/ewald/CMakeLists.txt		diff \| blob \| history
src/gromacs/ewald/calculate_spline_moduli.cpp	[moved from src/gromacs/ewald/calculate-spline-moduli.cpp with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/calculate_spline_moduli.h	[moved from src/gromacs/ewald/calculate-spline-moduli.h with 95% similarity]	diff \| blob \| history
src/gromacs/ewald/ewald.cpp		diff \| blob \| history
src/gromacs/ewald/ewald_utils.cpp	[moved from src/gromacs/ewald/ewald-utils.cpp with 96% similarity]	diff \| blob \| history
src/gromacs/ewald/ewald_utils.h	[moved from src/gromacs/ewald/ewald-utils.h with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/long_range_correction.cpp	[moved from src/gromacs/ewald/long-range-correction.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/long_range_correction.h	[moved from src/gromacs/ewald/long-range-correction.h with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/pme.cpp		diff \| blob \| history
src/gromacs/ewald/pme.cuh		diff \| blob \| history
src/gromacs/ewald/pme_gather.clh	[moved from src/gromacs/ewald/pme-gather.clh with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gather.cpp	[moved from src/gromacs/ewald/pme-gather.cpp with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gather.cu	[moved from src/gromacs/ewald/pme-gather.cu with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gather.h	[moved from src/gromacs/ewald/pme-gather.h with 94% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu.cpp	[moved from src/gromacs/ewald/pme-gpu.cpp with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_3dfft.cu	[moved from src/gromacs/ewald/pme-gpu-3dfft.cu with 96% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_3dfft.h	[moved from src/gromacs/ewald/pme-gpu-3dfft.h with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_3dfft_ocl.cpp	[moved from src/gromacs/ewald/pme-gpu-3dfft-ocl.cpp with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_constants.h	[moved from src/gromacs/ewald/pme-gpu-constants.h with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_internal.cpp	[moved from src/gromacs/ewald/pme-gpu-internal.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_internal.h	[moved from src/gromacs/ewald/pme-gpu-internal.h with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_program.cpp	[moved from src/gromacs/ewald/pme-gpu-program.cpp with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_program.h	[moved from src/gromacs/ewald/pme-gpu-program.h with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_program_impl.cpp	[moved from src/gromacs/ewald/pme-gpu-program-impl.cpp with 95% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_program_impl.cu	[moved from src/gromacs/ewald/pme-gpu-program-impl.cu with 95% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_program_impl.h	[moved from src/gromacs/ewald/pme-gpu-program-impl.h with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp	[moved from src/gromacs/ewald/pme-gpu-program-impl-ocl.cpp with 96% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_timings.cpp	[moved from src/gromacs/ewald/pme-gpu-timings.cpp with 96% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_timings.h	[moved from src/gromacs/ewald/pme-gpu-timings.h with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_types.h	[moved from src/gromacs/ewald/pme-gpu-types.h with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_types_host.h	[moved from src/gromacs/ewald/pme-gpu-types-host.h with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_types_host_impl.h	[moved from src/gromacs/ewald/pme-gpu-types-host-impl.h with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_utils.clh	[moved from src/gromacs/ewald/pme-gpu-utils.clh with 96% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_gpu_utils.h	[moved from src/gromacs/ewald/pme-gpu-utils.h with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_grid.cpp	[moved from src/gromacs/ewald/pme-grid.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_grid.h	[moved from src/gromacs/ewald/pme-grid.h with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_internal.h	[moved from src/gromacs/ewald/pme-internal.h with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_load_balancing.cpp	[moved from src/gromacs/ewald/pme-load-balancing.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_load_balancing.h	[moved from src/gromacs/ewald/pme-load-balancing.h with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_only.cpp	[moved from src/gromacs/ewald/pme-only.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_pp.cpp	[moved from src/gromacs/ewald/pme-pp.cpp with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_pp_communication.h	[moved from src/gromacs/ewald/pme-pp-communication.h with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_program.cl	[moved from src/gromacs/ewald/pme-program.cl with 92% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_redistribute.cpp	[moved from src/gromacs/ewald/pme-redistribute.cpp with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_redistribute.h	[moved from src/gromacs/ewald/pme-redistribute.h with 95% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_simd.h	[moved from src/gromacs/ewald/pme-simd.h with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_simd4.h	[moved from src/gromacs/ewald/pme-simd4.h with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_solve.clh	[moved from src/gromacs/ewald/pme-solve.clh with 98% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_solve.cpp	[moved from src/gromacs/ewald/pme-solve.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_solve.cu	[moved from src/gromacs/ewald/pme-solve.cu with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_solve.h	[moved from src/gromacs/ewald/pme-solve.h with 97% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_spline_work.cpp	[moved from src/gromacs/ewald/pme-spline-work.cpp with 95% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_spline_work.h	[moved from src/gromacs/ewald/pme-spline-work.h with 95% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_spread.clh	[moved from src/gromacs/ewald/pme-spread.clh with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_spread.cpp	[moved from src/gromacs/ewald/pme-spread.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_spread.cu	[moved from src/gromacs/ewald/pme-spread.cu with 99% similarity]	diff \| blob \| history
src/gromacs/ewald/pme_spread.h	[moved from src/gromacs/ewald/pme-spread.h with 95% similarity]	diff \| blob \| history
src/gromacs/ewald/tests/pmebsplinetest.cpp		diff \| blob \| history
src/gromacs/ewald/tests/pmetestcommon.cpp		diff \| blob \| history
src/gromacs/ewald/tests/pmetestcommon.h		diff \| blob \| history
src/gromacs/ewald/tests/testhardwarecontexts.h		diff \| blob \| history
src/gromacs/fileio/checkpoint.cpp		diff \| blob \| history
src/gromacs/fileio/enxio.cpp		diff \| blob \| history
src/gromacs/fileio/gmxfio.cpp		diff \| blob \| history
src/gromacs/fileio/gmxfio_impl.h	[moved from src/gromacs/fileio/gmxfio-impl.h with 97% similarity]	diff \| blob \| history
src/gromacs/fileio/gmxfio_xdr.cpp	[moved from src/gromacs/fileio/gmxfio-xdr.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/fileio/gmxfio_xdr.h	[moved from src/gromacs/fileio/gmxfio-xdr.h with 98% similarity]	diff \| blob \| history
src/gromacs/fileio/mtxio.cpp		diff \| blob \| history
src/gromacs/fileio/tpxio.cpp		diff \| blob \| history
src/gromacs/fileio/trrio.cpp		diff \| blob \| history
src/gromacs/fileio/trxio.cpp		diff \| blob \| history
src/gromacs/fileio/xtcio.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_awh.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_pme_error.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_wham.cpp		diff \| blob \| history
src/gromacs/gmxlib/conformation_utilities.cpp	[moved from src/gromacs/gmxlib/conformation-utilities.cpp with 97% similarity]	diff \| blob \| history
src/gromacs/gmxlib/conformation_utilities.h	[moved from src/gromacs/gmxlib/conformation-utilities.h with 96% similarity]	diff \| blob \| history
src/gromacs/gmxpreprocess/add_par.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/convparm.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/editconf.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/gen_ad.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/gen_vsite.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/gpp_atomtype.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/gpp_nextnb.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/grompp.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/grompp_impl.h	[moved from src/gromacs/gmxpreprocess/grompp-impl.h with 100% similarity]	blob \| history
src/gromacs/gmxpreprocess/insert_molecules.cpp	[moved from src/gromacs/gmxpreprocess/insert-molecules.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/gmxpreprocess/insert_molecules.h	[moved from src/gromacs/gmxpreprocess/insert-molecules.h with 96% similarity]	diff \| blob \| history
src/gromacs/gmxpreprocess/nm2type.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/pdb2gmx.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/pdb2top.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/readir.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/readpull.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/resall.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/solvate.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/ter_db.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/tests/CMakeLists.txt		diff \| blob \| history
src/gromacs/gmxpreprocess/tests/insert_molecules.cpp	[moved from src/gromacs/gmxpreprocess/tests/insert-molecules.cpp with 96% similarity]	diff \| blob \| history
src/gromacs/gmxpreprocess/tomorse.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/topdirs.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/topio.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/toppush.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/topshake.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/toputil.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/vsite_parm.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/x2top.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/xlate.cpp		diff \| blob \| history
src/gromacs/gpu_utils/tests/hostallocator.cpp		diff \| blob \| history
src/gromacs/listed_forces/CMakeLists.txt		diff \| blob \| history
src/gromacs/listed_forces/bonded.cpp		diff \| blob \| history
src/gromacs/listed_forces/gpubonded_impl.cpp	[moved from src/gromacs/listed_forces/gpubonded-impl.cpp with 100% similarity]	blob \| history
src/gromacs/listed_forces/gpubonded_impl.cu	[moved from src/gromacs/listed_forces/gpubonded-impl.cu with 99% similarity]	diff \| blob \| history
src/gromacs/listed_forces/gpubonded_impl.h	[moved from src/gromacs/listed_forces/gpubonded-impl.h with 100% similarity]	blob \| history
src/gromacs/listed_forces/gpubondedkernels.cu		diff \| blob \| history
src/gromacs/listed_forces/listed_forces.cpp		diff \| blob \| history
src/gromacs/listed_forces/listed_internal.cpp	[moved from src/gromacs/listed_forces/listed-internal.cpp with 98% similarity]	diff \| blob \| history
src/gromacs/listed_forces/listed_internal.h	[moved from src/gromacs/listed_forces/listed-internal.h with 100% similarity]	blob \| history
src/gromacs/listed_forces/manage_threading.cpp	[moved from src/gromacs/listed_forces/manage-threading.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/listed_forces/manage_threading.h	[moved from src/gromacs/listed_forces/manage-threading.h with 100% similarity]	blob \| history
src/gromacs/listed_forces/pairs.cpp		diff \| blob \| history
src/gromacs/listed_forces/position_restraints.cpp	[moved from src/gromacs/listed_forces/position-restraints.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/listed_forces/position_restraints.h	[moved from src/gromacs/listed_forces/position-restraints.h with 100% similarity]	blob \| history
src/gromacs/mdlib/broadcaststructs.cpp		diff \| blob \| history
src/gromacs/mdlib/calc_verletbuf.cpp		diff \| blob \| history
src/gromacs/mdlib/compute_io.cpp		diff \| blob \| history
src/gromacs/mdlib/force.cpp		diff \| blob \| history
src/gromacs/mdlib/forcerec.cpp		diff \| blob \| history
src/gromacs/mdlib/forcerec_threading.h	[moved from src/gromacs/mdlib/forcerec-threading.h with 96% similarity]	diff \| blob \| history
src/gromacs/mdlib/lincs.cpp		diff \| blob \| history
src/gromacs/mdlib/mdsetup.cpp		diff \| blob \| history
src/gromacs/mdlib/resethandler.cpp		diff \| blob \| history
src/gromacs/mdlib/settle.cpp		diff \| blob \| history
src/gromacs/mdlib/sim_util.cpp		diff \| blob \| history
src/gromacs/mdrun/md.cpp		diff \| blob \| history
src/gromacs/mdrun/mimic.cpp		diff \| blob \| history
src/gromacs/mdrun/minimize.cpp		diff \| blob \| history
src/gromacs/mdrun/rerun.cpp		diff \| blob \| history
src/gromacs/mdrun/runner.cpp		diff \| blob \| history
src/gromacs/mdrun/tpi.cpp		diff \| blob \| history
src/gromacs/mdrunutility/mdmodules.cpp		diff \| blob \| history
src/gromacs/mdrunutility/tests/CMakeLists.txt		diff \| blob \| history
src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp	[moved from src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/mdtypes/awh_correlation_history.h	[moved from src/gromacs/mdtypes/awh-correlation-history.h with 98% similarity]	diff \| blob \| history
src/gromacs/mdtypes/awh_history.h	[moved from src/gromacs/mdtypes/awh-history.h with 97% similarity]	diff \| blob \| history
src/gromacs/mdtypes/awh_params.h	[moved from src/gromacs/mdtypes/awh-params.h with 98% similarity]	diff \| blob \| history
src/gromacs/mdtypes/inputrec.cpp		diff \| blob \| history
src/gromacs/mdtypes/pull_params.h	[moved from src/gromacs/mdtypes/pull-params.h with 98% similarity]	diff \| blob \| history
src/gromacs/mdtypes/state.cpp		diff \| blob \| history
src/gromacs/onlinehelp_doc.h	[moved from src/gromacs/onlinehelp-doc.h with 97% similarity]	diff \| blob \| history
src/gromacs/options/abstractsection.cpp		diff \| blob \| history
src/gromacs/options/options.cpp		diff \| blob \| history
src/gromacs/options/options_impl.h	[moved from src/gromacs/options/options-impl.h with 98% similarity]	diff \| blob \| history
src/gromacs/options/optionsassigner.cpp		diff \| blob \| history
src/gromacs/options/optionsvisitor.cpp		diff \| blob \| history
src/gromacs/pbcutil/pbc_simd.cpp	[moved from src/gromacs/pbcutil/pbc-simd.cpp with 97% similarity]	diff \| blob \| history
src/gromacs/pbcutil/pbc_simd.h	[moved from src/gromacs/pbcutil/pbc-simd.h with 98% similarity]	diff \| blob \| history
src/gromacs/pulling/pull.h		diff \| blob \| history
src/gromacs/pulling/pull_internal.h		diff \| blob \| history
src/gromacs/restraint/restraintmdmodule.cpp		diff \| blob \| history
src/gromacs/restraint/restraintmdmodule_impl.h	[moved from src/gromacs/restraint/restraintmdmodule-impl.h with 99% similarity]	diff \| blob \| history
src/gromacs/selection/compiler.cpp		diff \| blob \| history
src/gromacs/selection/evaluate.cpp		diff \| blob \| history
src/gromacs/selection/parsetree.cpp		diff \| blob \| history
src/gromacs/selection/scanner_internal.cpp		diff \| blob \| history
src/gromacs/selection/selectioncollection.cpp		diff \| blob \| history
src/gromacs/selection/selectioncollection_impl.h	[moved from src/gromacs/selection/selectioncollection-impl.h with 98% similarity]	diff \| blob \| history
src/gromacs/selection/selmethod.cpp		diff \| blob \| history
src/gromacs/selection/selmethod_impl.h	[moved from src/gromacs/selection/selmethod-impl.h with 98% similarity]	diff \| blob \| history
src/gromacs/selection/sm_distance.cpp		diff \| blob \| history
src/gromacs/selection/sm_insolidangle.cpp		diff \| blob \| history
src/gromacs/selection/sm_merge.cpp		diff \| blob \| history
src/gromacs/selection/sm_permute.cpp		diff \| blob \| history
src/gromacs/selection/sm_position.cpp		diff \| blob \| history
src/gromacs/selection/sm_same.cpp		diff \| blob \| history
src/gromacs/selection/sm_simple.cpp		diff \| blob \| history
src/gromacs/tools/report_methods.cpp	[moved from src/gromacs/tools/report-methods.cpp with 99% similarity]	diff \| blob \| history
src/gromacs/tools/report_methods.h	[moved from src/gromacs/tools/report-methods.h with 98% similarity]	diff \| blob \| history
src/gromacs/tools/tests/CMakeLists.txt		diff \| blob \| history
src/gromacs/tools/tests/report_methods.cpp	[moved from src/gromacs/tools/tests/report-methods.cpp with 98% similarity]	diff \| blob \| history
src/gromacs/trajectoryanalysis/analysissettings.cpp		diff \| blob \| history
src/gromacs/trajectoryanalysis/analysissettings_impl.h	[moved from src/gromacs/trajectoryanalysis/analysissettings-impl.h with 97% similarity]	diff \| blob \| history
src/gromacs/trajectoryanalysis/runnercommon.cpp		diff \| blob \| history
src/gromacs/utility/baseversion-gen.cpp.cmakein		diff \| blob \| history
src/gromacs/utility/baseversion.cpp		diff \| blob \| history
src/gromacs/utility/baseversion_gen.h	[moved from src/gromacs/utility/baseversion-gen.h with 96% similarity]	diff \| blob \| history
src/gromacs/utility/tests/CMakeLists.txt		diff \| blob \| history
src/gromacs/utility/tests/alignedallocator.cpp		diff \| blob \| history
src/gromacs/utility/tests/alignedallocator_impl.h	[moved from src/gromacs/utility/tests/alignedallocator-impl.h with 98% similarity]	diff \| blob \| history
src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp	[moved from src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp with 96% similarity]	diff \| blob \| history
src/programs/legacymodules.cpp		diff \| blob \| history
src/testutils/CMakeLists.txt		diff \| blob \| history
src/testutils/mpi_printer.cpp	[moved from src/testutils/mpi-printer.cpp with 98% similarity]	diff \| blob \| history
src/testutils/mpi_printer.h	[moved from src/testutils/mpi-printer.h with 97% similarity]	diff \| blob \| history
src/testutils/refdata.cpp		diff \| blob \| history
src/testutils/refdata_checkers.h	[moved from src/testutils/refdata-checkers.h with 98% similarity]	diff \| blob \| history
src/testutils/refdata_impl.h	[moved from src/testutils/refdata-impl.h with 100% similarity]	blob \| history
src/testutils/refdata_xml.cpp	[moved from src/testutils/refdata-xml.cpp with 98% similarity]	diff \| blob \| history
src/testutils/refdata_xml.h	[moved from src/testutils/refdata-xml.h with 96% similarity]	diff \| blob \| history
src/testutils/testinit.cpp		diff \| blob \| history
src/testutils/testutils_doc.h	[moved from src/testutils/testutils-doc.h with 96% similarity]	diff \| blob \| history

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