BioD PNPI Git Repos - alexxy/gromacs.git/commit - src/gromacs/topology/idef.cpp

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Mark Abraham <mark.j.abraham@gmail.com>
	Mon, 10 May 2021 13:36:44 +0000 (15:36 +0200)
committer	Mark Abraham <mark.j.abraham@gmail.com>
	Tue, 11 May 2021 06:28:14 +0000 (06:28 +0000)
commit	516e02454b6e6c13f4ceb7705770d017232071b1
tree	cf3fcc4a94c5ab88ffbe2470b6524bb9b586de4d	tree \| snapshot
parent	285b6971a5f1e1fe4cd0fd0dc68b88fc2e387a2e	commit \| diff

Apply clang-format-11

This is better than slowly dribbling changes all over the
code base

275 files changed:

api/gmxapi/cpp/session.cpp		diff \| blob \| history
api/gmxapi/cpp/system.cpp		diff \| blob \| history
api/legacy/include/gromacs/utility/gmxassert.h		diff \| blob \| history
api/legacy/include/gromacs/utility/listoflists.h		diff \| blob \| history
api/legacy/include/gromacs/utility/real.h		diff \| blob \| history
api/nblib/gmxsetup.cpp		diff \| blob \| history
api/nblib/listed_forces/bondtypes.h		diff \| blob \| history
api/nblib/molecules.h		diff \| blob \| history
api/nblib/simulationstate.cpp		diff \| blob \| history
api/nblib/tests/testsystems.cpp		diff \| blob \| history
api/nblib/topology.cpp		diff \| blob \| history
src/gromacs/analysisdata/arraydata.cpp		diff \| blob \| history
src/gromacs/analysisdata/dataframe.cpp		diff \| blob \| history
src/gromacs/analysisdata/dataframe.h		diff \| blob \| history
src/gromacs/analysisdata/datamodulemanager.cpp		diff \| blob \| history
src/gromacs/analysisdata/dataproxy.cpp		diff \| blob \| history
src/gromacs/analysisdata/datastorage.cpp		diff \| blob \| history
src/gromacs/analysisdata/framelocaldata.h		diff \| blob \| history
src/gromacs/analysisdata/modules/histogram.cpp		diff \| blob \| history
src/gromacs/analysisdata/modules/plot.cpp		diff \| blob \| history
src/gromacs/analysisdata/tests/datatest.cpp		diff \| blob \| history
src/gromacs/analysisdata/tests/mock_datamodule.cpp		diff \| blob \| history
src/gromacs/applied_forces/awh/awh.cpp		diff \| blob \| history
src/gromacs/applied_forces/awh/awh.h		diff \| blob \| history
src/gromacs/applied_forces/awh/biasgrid.cpp		diff \| blob \| history
src/gromacs/applied_forces/awh/biasparams.h		diff \| blob \| history
src/gromacs/applied_forces/awh/biaswriter.cpp		diff \| blob \| history
src/gromacs/applied_forces/awh/correlationgrid.cpp		diff \| blob \| history
src/gromacs/applied_forces/awh/dimparams.h		diff \| blob \| history
src/gromacs/applied_forces/awh/tests/awh_setup.h		diff \| blob \| history
src/gromacs/applied_forces/densityfitting/densityfittingamplitudelookup.cpp		diff \| blob \| history
src/gromacs/applied_forces/densityfitting/densityfittingforceprovider.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpcontext.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpmodule.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpwriter.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlinemodulemanager_impl.h		diff \| blob \| history
src/gromacs/commandline/cmdlineoptionsmodule.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlineparser.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlineprogramcontext.cpp		diff \| blob \| history
src/gromacs/commandline/pargs.cpp		diff \| blob \| history
src/gromacs/commandline/pargs.h		diff \| blob \| history
src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp		diff \| blob \| history
src/gromacs/commandline/tests/cmdlineparser.cpp		diff \| blob \| history
src/gromacs/coordinateio/coordinatefile.h		diff \| blob \| history
src/gromacs/coordinateio/outputadapters/setatoms.h		diff \| blob \| history
src/gromacs/coordinateio/outputadapters/setstarttime.h		diff \| blob \| history
src/gromacs/coordinateio/outputadapters/settimestep.h		diff \| blob \| history
src/gromacs/domdec/dlbtiming.cpp		diff \| blob \| history
src/gromacs/domdec/domdec.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_network.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_specatomcomm.cpp		diff \| blob \| history
src/gromacs/domdec/ga2la.h		diff \| blob \| history
src/gromacs/essentialdynamics/edsam.cpp		diff \| blob \| history
src/gromacs/ewald/pme.cpp		diff \| blob \| history
src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cu		diff \| blob \| history
src/gromacs/ewald/pme_force_sender_gpu_impl.cu		diff \| blob \| history
src/gromacs/ewald/pme_gather.clh		diff \| blob \| history
src/gromacs/ewald/pme_gather.cpp		diff \| blob \| history
src/gromacs/ewald/pme_gpu_internal.cpp		diff \| blob \| history
src/gromacs/ewald/pme_gpu_types_host_impl.h		diff \| blob \| history
src/gromacs/ewald/pme_only.cpp		diff \| blob \| history
src/gromacs/ewald/pme_redistribute.cpp		diff \| blob \| history
src/gromacs/ewald/tests/pmebsplinetest.cpp		diff \| blob \| history
src/gromacs/ewald/tests/pmetestcommon.cpp		diff \| blob \| history
src/gromacs/fileio/mrcdensitymap.cpp		diff \| blob \| history
src/gromacs/fileio/mrcdensitymapheader.h		diff \| blob \| history
src/gromacs/fileio/tests/fileioxdrserializer.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_awh.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_order.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_sham.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_wham.cpp		diff \| blob \| history
src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp		diff \| blob \| history
src/gromacs/gmxlib/nonbonded/nb_free_energy.h		diff \| blob \| history
src/gromacs/gmxpreprocess/gen_vsite.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/genhydro.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/gpp_atomtype.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/vsite_parm.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/x2top.cpp		diff \| blob \| history
src/gromacs/gpu_utils/device_context_sycl.cpp		diff \| blob \| history
src/gromacs/gpu_utils/device_utils.clh		diff \| blob \| history
src/gromacs/gpu_utils/gpuregiontimer_ocl.h		diff \| blob \| history
src/gromacs/hardware/cpuinfo.cpp		diff \| blob \| history
src/gromacs/hardware/detecthardware.cpp		diff \| blob \| history
src/gromacs/hardware/device_management_sycl.cpp		diff \| blob \| history
src/gromacs/hardware/hardwaretopology.cpp		diff \| blob \| history
src/gromacs/hardware/hardwaretopology.h		diff \| blob \| history
src/gromacs/listed_forces/bonded.cpp		diff \| blob \| history
src/gromacs/listed_forces/bonded.h		diff \| blob \| history
src/gromacs/listed_forces/disre.cpp		diff \| blob \| history
src/gromacs/listed_forces/gpubonded_impl.cu		diff \| blob \| history
src/gromacs/listed_forces/gpubondedkernels.cu		diff \| blob \| history
src/gromacs/listed_forces/tests/pairs.cpp		diff \| blob \| history
src/gromacs/math/arrayrefwithpadding.h		diff \| blob \| history
src/gromacs/math/coordinatetransformation.cpp		diff \| blob \| history
src/gromacs/math/densityfit.cpp		diff \| blob \| history
src/gromacs/math/gausstransform.cpp		diff \| blob \| history
src/gromacs/math/multidimarray.h		diff \| blob \| history
src/gromacs/math/paddedvector.h		diff \| blob \| history
src/gromacs/math/tests/neldermead.cpp		diff \| blob \| history
src/gromacs/mdlib/boxdeformation.cpp		diff \| blob \| history
src/gromacs/mdlib/calc_verletbuf.cpp		diff \| blob \| history
src/gromacs/mdlib/coupling.cpp		diff \| blob \| history
src/gromacs/mdlib/energyoutput.cpp		diff \| blob \| history
src/gromacs/mdlib/expanded.cpp		diff \| blob \| history
src/gromacs/mdlib/gmx_omp_nthreads.cpp		diff \| blob \| history
src/gromacs/mdlib/groupcoord.cpp		diff \| blob \| history
src/gromacs/mdlib/leapfrog_gpu.cu		diff \| blob \| history
src/gromacs/mdlib/lincs.cpp		diff \| blob \| history
src/gromacs/mdlib/lincs_gpu.cpp		diff \| blob \| history
src/gromacs/mdlib/mdatoms.cpp		diff \| blob \| history
src/gromacs/mdlib/resethandler.cpp		diff \| blob \| history
src/gromacs/mdlib/settle.cpp		diff \| blob \| history
src/gromacs/mdlib/settle_gpu.cpp		diff \| blob \| history
src/gromacs/mdlib/simulationsignal.cpp		diff \| blob \| history
src/gromacs/mdlib/tests/leapfrogtestrunners.cpp		diff \| blob \| history
src/gromacs/mdlib/update.cpp		diff \| blob \| history
src/gromacs/mdlib/update_constrain_gpu_impl.h		diff \| blob \| history
src/gromacs/mdlib/updategroupscog.cpp		diff \| blob \| history
src/gromacs/mdrun/md.cpp		diff \| blob \| history
src/gromacs/mdrun/runner.cpp		diff \| blob \| history
src/gromacs/mdrun/simulationinputhandle.cpp		diff \| blob \| history
src/gromacs/mdrun/simulatorbuilder.h		diff \| blob \| history
src/gromacs/mdrunutility/threadaffinity.cpp		diff \| blob \| history
src/gromacs/mdspan/extents.h		diff \| blob \| history
src/gromacs/mdspan/mdspan.h		diff \| blob \| history
src/gromacs/mdtypes/forcebuffers.cpp		diff \| blob \| history
src/gromacs/mdtypes/forcebuffers.h		diff \| blob \| history
src/gromacs/mdtypes/forceoutput.h		diff \| blob \| history
src/gromacs/mdtypes/group.cpp		diff \| blob \| history
src/gromacs/mdtypes/iforceprovider.h		diff \| blob \| history
src/gromacs/mdtypes/interaction_const.h		diff \| blob \| history
src/gromacs/mdtypes/swaphistory.h		diff \| blob \| history
src/gromacs/modularsimulator/compositesimulatorelement.cpp		diff \| blob \| history
src/gromacs/modularsimulator/constraintelement.cpp		diff \| blob \| history
src/gromacs/modularsimulator/freeenergyperturbationdata.cpp		diff \| blob \| history
src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp		diff \| blob \| history
src/gromacs/modularsimulator/propagator.cpp		diff \| blob \| history
src/gromacs/modularsimulator/signallers.cpp		diff \| blob \| history
src/gromacs/modularsimulator/statepropagatordata.cpp		diff \| blob \| history
src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp		diff \| blob \| history
src/gromacs/nbnxm/atomdata.cpp		diff \| blob \| history
src/gromacs/nbnxm/benchmark/bench_setup.cpp		diff \| blob \| history
src/gromacs/nbnxm/cuda/nbnxm_cuda_kernel_utils.cuh		diff \| blob \| history
src/gromacs/nbnxm/gpu_data_mgmt.h		diff \| blob \| history
src/gromacs/nbnxm/kerneldispatch.cpp		diff \| blob \| history
src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp		diff \| blob \| history
src/gromacs/nbnxm/kernels_simd_2xmm/kernel_common.h		diff \| blob \| history
src/gromacs/nbnxm/kernels_simd_2xmm/kernel_outer.h		diff \| blob \| history
src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp		diff \| blob \| history
src/gromacs/nbnxm/kernels_simd_4xm/kernel_common.h		diff \| blob \| history
src/gromacs/nbnxm/kernels_simd_4xm/kernel_outer.h		diff \| blob \| history
src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp		diff \| blob \| history
src/gromacs/nbnxm/nbnxm_gpu.h		diff \| blob \| history
src/gromacs/nbnxm/nbnxm_setup.cpp		diff \| blob \| history
src/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh		diff \| blob \| history
src/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh		diff \| blob \| history
src/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh		diff \| blob \| history
src/gromacs/nbnxm/pairlist_simd_2xmm.h		diff \| blob \| history
src/gromacs/nbnxm/pairlist_simd_4xm.h		diff \| blob \| history
src/gromacs/nbnxm/pairlist_tuning.cpp		diff \| blob \| history
src/gromacs/nbnxm/pairlistwork.h		diff \| blob \| history
src/gromacs/nbnxm/pairsearch.cpp		diff \| blob \| history
src/gromacs/nbnxm/sycl/nbnxm_sycl_kernel.cpp		diff \| blob \| history
src/gromacs/onlinehelp/helpformat.cpp		diff \| blob \| history
src/gromacs/onlinehelp/helpwritercontext.cpp		diff \| blob \| history
src/gromacs/onlinehelp/tests/mock_helptopic.cpp		diff \| blob \| history
src/gromacs/options/abstractoption.h		diff \| blob \| history
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src/gromacs/pbcutil/pbc_aiuc_cuda.cuh		diff \| blob \| history
src/gromacs/pbcutil/tests/com.cpp		diff \| blob \| history
src/gromacs/pulling/pull.cpp		diff \| blob \| history
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src/gromacs/pulling/pull_rotation.cpp		diff \| blob \| history
src/gromacs/random/gammadistribution.h		diff \| blob \| history
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src/gromacs/restraint/tests/manager.cpp		diff \| blob \| history
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src/gromacs/selection/tests/poscalc.cpp		diff \| blob \| history
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src/gromacs/simd/impl_ibm_vsx/impl_ibm_vsx_util_double.h		diff \| blob \| history
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src/gromacs/topology/atomprop.cpp		diff \| blob \| history
src/gromacs/topology/idef.cpp		diff \| blob \| history
src/gromacs/topology/idef.h		diff \| blob \| history
src/gromacs/topology/residuetypes.cpp		diff \| blob \| history
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