Merge branch 'release-2019' into master
authorPaul Bauer <paul.bauer.q@gmail.com>
Wed, 20 Feb 2019 12:50:49 +0000 (13:50 +0100)
committerPaul Bauer <paul.bauer.q@gmail.com>
Wed, 20 Feb 2019 12:50:49 +0000 (13:50 +0100)
commitf34c351274ba0a20aaeae56babbb8b3f44cadcb3
tree20b90be6021d64f0488e4ff9a7b08942ee3d114e
parent52cbaca4af40da2c459cee7e0b38221c42a8975f
parent39cd3a33d38ab79282ad57838f3e9f088efa20f3
Merge branch 'release-2019' into master

Kept the way topologyinformation was removed from solvate and
insert_molecules in 2019.

Resolved Conflicts:
cmake/gmxVersionInfo.cmake
docs/CMakeLists.txt
docs/user-guide/mdp-options.rst
src/gromacs/gmxpreprocess/insert-molecules.cpp
src/gromacs/gmxpreprocess/solvate.cpp
src/gromacs/mdlib/nbnxn_cuda/nbnxn_cuda_kernel_utils.cuh
src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernel_utils.clh
src/gromacs/mdlib/sim_util.cpp
src/gromacs/trajectoryanalysis/topologyinformation.cpp

Change-Id: I2576133c4bc7a3c55cedb29e9832bb5afa8fe76f
26 files changed:
cmake/gmxManageNvccConfig.cmake
cmake/gmxSimdFlags.cmake
cmake/gmxVersionInfo.cmake
docs/CMakeLists.txt
docs/install-guide/index.rst
docs/release-notes/index.rst
docs/user-guide/mdp-options.rst
src/gromacs/CMakeLists.txt
src/gromacs/domdec/partition.cpp
src/gromacs/ewald/pme.cpp
src/gromacs/ewald/tests/pmetestcommon.cpp
src/gromacs/ewald/tests/testhardwarecontexts.cpp
src/gromacs/gmxpreprocess/insert_molecules.cpp
src/gromacs/gmxpreprocess/readir.cpp
src/gromacs/gmxpreprocess/solvate.cpp
src/gromacs/mdlib/constr.cpp
src/gromacs/mdlib/constr.h
src/gromacs/mdlib/force.cpp
src/gromacs/mdlib/sim_util.cpp
src/gromacs/mdrun/rerun.cpp
src/gromacs/mdrun/runner.cpp
src/gromacs/nbnxm/cuda/nbnxm_cuda_kernel_utils.cuh
src/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh
src/gromacs/taskassignment/decidegpuusage.cpp
src/gromacs/taskassignment/resourcedivision.cpp
src/gromacs/trajectoryanalysis/topologyinformation.cpp