Use ArrayRef in signatures of constraints and some pulling
authorJoe Jordan <ejjordan12@gmail.com>
Thu, 25 Mar 2021 06:11:17 +0000 (06:11 +0000)
committerMark Abraham <mark.j.abraham@gmail.com>
Thu, 25 Mar 2021 06:11:17 +0000 (06:11 +0000)
commitfd323f81addb515cf68de5bebfbe8388abcf0b0b
tree9d7401af245bb00f248af0cbf7cc2aaeed2bfccd
parent2a81558ac2c145a468701c90384400efdc6acd9b
Use ArrayRef in signatures of constraints and some pulling

In order to use ArrayRef in constr, settle, shake, and lincs, some
pull code also needed to be refactored. Part of preparation for
refactoring of t_mdatoms.
22 files changed:
src/gromacs/applied_forces/awh/awh.cpp
src/gromacs/applied_forces/awh/awh.h
src/gromacs/domdec/mdsetup.cpp
src/gromacs/gmxpreprocess/grompp.cpp
src/gromacs/gmxpreprocess/readir.h
src/gromacs/gmxpreprocess/readpull.cpp
src/gromacs/mdlib/constr.cpp
src/gromacs/mdlib/constr.h
src/gromacs/mdlib/lincs.cpp
src/gromacs/mdlib/lincs.h
src/gromacs/mdlib/settle.cpp
src/gromacs/mdlib/settle.h
src/gromacs/mdlib/shake.cpp
src/gromacs/mdlib/shake.h
src/gromacs/mdlib/sim_util.cpp
src/gromacs/mdlib/tests/constrtestrunners.cpp
src/gromacs/mdlib/tests/settletestrunners.cpp
src/gromacs/mdlib/tests/shake.cpp
src/gromacs/mdrun/md.cpp
src/gromacs/pulling/pull.cpp
src/gromacs/pulling/pull.h
src/gromacs/pulling/pullutil.cpp