BioD PNPI Git Repos - alexxy/gromacs.git/commit - src/gromacs/gmxpreprocess/grompp.cpp

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Paul Bauer <paul.bauer.q@gmail.com>
	Fri, 19 Mar 2021 11:45:06 +0000 (12:45 +0100)
committer	Joe Jordan <ejjordan12@gmail.com>
	Fri, 19 Mar 2021 14:01:24 +0000 (14:01 +0000)
commit	8b5ddb23880b604099f7ff5d312779f70c72eeec
tree	296bd1288c7674bb074bf6fa32f7b5a24e437b8e	tree \| snapshot
parent	7f21ed57337d8c81456bff1d9b866ab1fccfb9eb	commit \| diff

Bulk change to const ref for mtop

Change function signatures in mtop_lookup.h and mtop_util.h to be const
ref only for mtop. Also change signatures in other files as I went
along.

This change is only refactoring.

83 files changed:

api/gmxapi/cpp/tpr.cpp		diff \| blob \| history
api/legacy/include/gromacs/fileio/confio.h		diff \| blob \| history
api/legacy/include/gromacs/fileio/tpxio.h		diff \| blob \| history
api/legacy/include/gromacs/fileio/trxio.h		diff \| blob \| history
src/gromacs/coordinateio/coordinatefile.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_constraints.cpp		diff \| blob \| history
src/gromacs/essentialdynamics/edsam.cpp		diff \| blob \| history
src/gromacs/fileio/confio.cpp		diff \| blob \| history
src/gromacs/fileio/groio.cpp		diff \| blob \| history
src/gromacs/fileio/groio.h		diff \| blob \| history
src/gromacs/fileio/tpxio.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_clustsize.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_disre.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_nmeig.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_nmr.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/genconf.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/genrestr.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/grompp.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/insert_molecules.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/readir.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/readir.h		diff \| blob \| history
src/gromacs/gmxpreprocess/readpull.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/solvate.cpp		diff \| blob \| history
src/gromacs/imd/imd.cpp		diff \| blob \| history
src/gromacs/imd/imd.h		diff \| blob \| history
src/gromacs/listed_forces/disre.cpp		diff \| blob \| history
src/gromacs/listed_forces/disre.h		diff \| blob \| history
src/gromacs/listed_forces/orires.cpp		diff \| blob \| history
src/gromacs/listed_forces/orires.h		diff \| blob \| history
src/gromacs/mdlib/dispersioncorrection.cpp		diff \| blob \| history
src/gromacs/mdlib/mdatoms.cpp		diff \| blob \| history
src/gromacs/mdlib/mdoutf.cpp		diff \| blob \| history
src/gromacs/mdlib/mdoutf.h		diff \| blob \| history
src/gromacs/mdlib/membed.cpp		diff \| blob \| history
src/gromacs/mdlib/trajectory_writing.cpp		diff \| blob \| history
src/gromacs/mdlib/trajectory_writing.h		diff \| blob \| history
src/gromacs/mdlib/update_vv.cpp		diff \| blob \| history
src/gromacs/mdlib/update_vv.h		diff \| blob \| history
src/gromacs/mdlib/updategroupscog.cpp		diff \| blob \| history
src/gromacs/mdlib/vsite.cpp		diff \| blob \| history
src/gromacs/mdrun/isimulator.h		diff \| blob \| history
src/gromacs/mdrun/md.cpp		diff \| blob \| history
src/gromacs/mdrun/mimic.cpp		diff \| blob \| history
src/gromacs/mdrun/minimize.cpp		diff \| blob \| history
src/gromacs/mdrun/rerun.cpp		diff \| blob \| history
src/gromacs/mdrun/runner.cpp		diff \| blob \| history
src/gromacs/mdrun/shellfc.cpp		diff \| blob \| history
src/gromacs/mdrun/shellfc.h		diff \| blob \| history
src/gromacs/mdrun/simulatorbuilder.h		diff \| blob \| history
src/gromacs/mdrun/tpi.cpp		diff \| blob \| history
src/gromacs/modularsimulator/computeglobalselement.cpp		diff \| blob \| history
src/gromacs/modularsimulator/computeglobalselement.h		diff \| blob \| history
src/gromacs/modularsimulator/energydata.cpp		diff \| blob \| history
src/gromacs/modularsimulator/energydata.h		diff \| blob \| history
src/gromacs/modularsimulator/forceelement.cpp		diff \| blob \| history
src/gromacs/modularsimulator/forceelement.h		diff \| blob \| history
src/gromacs/modularsimulator/modularsimulator.cpp		diff \| blob \| history
src/gromacs/modularsimulator/simulatoralgorithm.cpp		diff \| blob \| history
src/gromacs/modularsimulator/statepropagatordata.cpp		diff \| blob \| history
src/gromacs/modularsimulator/statepropagatordata.h		diff \| blob \| history
src/gromacs/modularsimulator/trajectoryelement.cpp		diff \| blob \| history
src/gromacs/modularsimulator/trajectoryelement.h		diff \| blob \| history
src/gromacs/pulling/pull.cpp		diff \| blob \| history
src/gromacs/pulling/pull.h		diff \| blob \| history
src/gromacs/pulling/pull_rotation.cpp		diff \| blob \| history
src/gromacs/pulling/pull_rotation.h		diff \| blob \| history
src/gromacs/selection/centerofmass.cpp		diff \| blob \| history
src/gromacs/selection/indexutil.cpp		diff \| blob \| history
src/gromacs/selection/selection.cpp		diff \| blob \| history
src/gromacs/selection/sm_simple.cpp		diff \| blob \| history
src/gromacs/swap/swapcoords.cpp		diff \| blob \| history
src/gromacs/swap/swapcoords.h		diff \| blob \| history
src/gromacs/taskassignment/resourcedivision.cpp		diff \| blob \| history
src/gromacs/taskassignment/resourcedivision.h		diff \| blob \| history
src/gromacs/tools/convert_tpr.cpp		diff \| blob \| history
src/gromacs/tools/make_ndx.cpp		diff \| blob \| history
src/gromacs/tools/pme_error.cpp		diff \| blob \| history
src/gromacs/tools/report_methods.cpp		diff \| blob \| history
src/gromacs/tools/tune_pme.cpp		diff \| blob \| history
src/gromacs/topology/mtop_lookup.h		diff \| blob \| history
src/gromacs/topology/mtop_util.cpp		diff \| blob \| history
src/gromacs/topology/mtop_util.h		diff \| blob \| history
src/gromacs/trajectoryanalysis/topologyinformation.cpp		diff \| blob \| history

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