clang-tidy modernize

clang-tidy modernize

avoid-bind (no changes)
redundant-void-arg
use-bool-literals

For deprecated-headers the changes are made in the cpp files but the
check isn't enabled. It isn't possible to enable it only for source
files but not header files and some of our headers still need to
compile with a C compiler for the nonbonded kernels. Once those
are removed the check should be enabled.

Change-Id: I7316b9bbffaf8842fecc40327543397984f75f5c