\tt conf & \tt esp & Asc & \tt -c & Coordinate file in ESPResSo format \\[-0.1ex]
\tt conf & \tt g96 & Asc & \tt -c & Coordinate file in Gromos-96 format \\[-0.1ex]
\tt conf & \tt gro & Asc & \tt -c & Coordinate file in Gromos-87 format \\[-0.1ex]
-\tt conf & \tt gro & & \tt -c & Structure: \tt gro g96 pdb esp tpr tpb tpa \\[-0.1ex]
+\tt conf & \tt gro & & \tt -c & Structure: \tt gro g96 pdb esp tpr \\[-0.1ex]
\tt out & \tt gro & & \tt -o & Structure: \tt gro g96 pdb esp \\[-0.1ex]
\tt polar & \tt hdb & Asc & \tt & Hydrogen data base \\[-0.1ex]
\tt topinc & \tt itp & Asc & \tt & Include file for topology \\[-0.1ex]
\tt residue & \tt rtp & Asc & \tt & Residue Type file used by {\tt pdb2gmx} \\[-0.1ex]
\tt doc & \tt tex & Asc & \tt -o & LaTeX file \\[-0.1ex]
\tt topol & \tt top & Asc & \tt -p & Topology file \\[-0.1ex]
-\tt topol & \tt tpb & Bin & \tt -s & Binary run input file \\[-0.1ex]
-\tt topol & \tt tpr & & \tt -s & Generic run input: \tt tpr tpb tpa \\[-0.1ex]
-\tt topol & \tt tpr & & \tt -s & Structure+mass(db): \tt tpr tpb tpa gro g96 pdb \\[-0.1ex]
+\tt topol & \tt tpr & & \tt -s & Generic run input: \tt tpr \\[-0.1ex]
+\tt topol & \tt tpr & & \tt -s & Structure+mass(db): \tt tpr gro g96 pdb \\[-0.1ex]
\tt topol & \tt tpr & xdr & \tt -s & Portable xdr run input file \\[-0.1ex]
-\tt traj & \tt trj & Bin & \tt & Trajectory file (architecture specific) \\[-0.1ex]
-\tt traj & \tt trr & & \tt & Full precision trajectory: \tt trr trj cpt \\[-0.1ex]
+\tt traj & \tt trr & & \tt & Full precision trajectory: \tt trr cpt \\[-0.1ex]
\tt traj & \tt trr & xdr & \tt & Trajectory in portable xdr format \\[-0.1ex]
\tt root & \tt xpm & Asc & \tt & X PixMap compatible matrix file \\[-0.1ex]
-\tt traj & \tt xtc & & \tt -f & Trajec., input: \tt xtc trr trj cpt gro g96 pdb \\[-0.1ex]
-\tt traj & \tt xtc & & \tt -f & Trajectory, output: \tt xtc trr trj gro g96 pdb \\[-0.1ex]
+\tt traj & \tt xtc & & \tt -f & Trajec., input: \tt xtc trr cpt gro g96 pdb \\[-0.1ex]
+\tt traj & \tt xtc & & \tt -f & Trajectory, output: \tt xtc trr gro g96 pdb \\[-0.1ex]
\tt traj & \tt xtc & xdr & \tt & Compressed trajectory (portable xdr format) \\[-0.1ex]
\tt graph & \tt xvg & Asc & \tt -o & xvgr/xmgr file \\[-0.1ex]
\dline
% LocalWords: lccX atomtp atp Asc Atomtype pdb gmx eiwit brk Brookhaven cpt tm
% LocalWords: xdr nnnice dat dlg ngmx sam edi edo ener edr ene ent eps conf ss
-% LocalWords: PostScript ESPResSo gtraj Gromos gro tpr tpb tpa hdb topinc itp
-% LocalWords: grompp mdp mtx ndx rtp tex LaTeX topol traj trj trr xpm PixMap
+% LocalWords: PostScript ESPResSo gtraj Gromos gro tpr hdb topinc itp
+% LocalWords: grompp mdp mtx ndx rtp tex LaTeX topol traj trr xpm PixMap
% LocalWords: xtc Trajec xvg xvgr xmgr ps