1. GROMACS
2. Trajectory file reading using VMD plugins
3. Internal FFT (fftpack)
-4. The memtestG80 library
-5. thread_mpi
-6. Blas
-7. Lapack
+4. thread_mpi
+5. Blas
+6. Lapack
+7. Subset of Boost C++ library
+8. Google Test and Google Mock
+9. Sun XDR implementation (External Data Representation)
+10. Sun FDLIBM (Freely Distributable Maths Library)
+11. Random123
+12. md5
Our chosen method for packaging distributions (CPack) only permits a
package to have a single license file, so we are unfortunately forced
============================================
1. GROMACS
+==========
As our use of the LGPL conveys upon a licensee the option to
redistribute the library under the terms of the plain GPL, we must
2. Trajectory file reading using VMD plugins
============================================
- Files: include/molfile_plugin.h
- include/vmddlopen.h
- include/vmdplugin.h
- src/gmxlib/vmddlopen.c
- src/gmxlib/vmdio.c
+ Files: src/external/vmd_molfile/
+ src/gromacs/fileio/vmdio.c
(C) Copyright 1995-2009 The Board of Trustees of the
University of Illinois
3. Internal FFT (ffpack)
========================
- Files: src/mdlib/fftpack.c
+ Files: src/external/fftpack/fftpack.c
Copyright (c) 2005-2011, NumPy Developers.
All rights reserved.
fftpack.c : A set of FFT routines in C.
Algorithmically based on Fortran-77 FFTPACK by Paul N. Swarztrauber (Version 4, 1985).
-4. The memtestG80 library
-=========================
-
-The memtestG80 library, written by Imran Haque, is Copyright 2009 Stanford University,
-covered by the LGPL license. It may be used under the following terms:
-
-IN NO EVENT SHALL STANFORD UNIVERSITY BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
-SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF
-THE USE OF THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF STANFORD UNIVERSITY HAS BEEN
-ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-STANFORD UNIVERSITY SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED
-TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
-THE SOFTWARE AND ACCOMPANYING DOCUMENTATION PROVIDED HEREUNDER IS PROVIDED "AS IS".
-Folding@home HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS,
-OR MODIFICATIONS.
-
-Restrictions:
-
-You may use this software on a computer system only if you own the system or have the
-written permission of the owner.
-
-You may not alter the software or associated data files.
-
-Certain builds of this software incorporate by linkage code from the libintl
-and libiconv libraries, which are covered by the Library GNU Public License,
-available at http://www.gnu.org/licenses/lgpl-3.0.txt.
-
-5. thread_mpi
+4. thread_mpi
=============
+ Files: src/external/thread_mpi/
+
Copyright (c) 2009-2012, Sander Pronk & Erik Lindahl.
All rights reserved.
inclusion in the official distribution, but derived work should not
be called official thread_mpi.
-6. Blas
+5. Blas
=======
These files are semi-automatic translations by f2c from the original netlib BLAS library.
Erik Lindahl, 2008-10-07.
-7. Lapack
+6. Lapack
=========
These files are semi-automatic translations by f2c from the original netlib LAPACK library.
better idea to use the full reference implementation.
Erik Lindahl, 2008-10-07.
+
+7. Subset of Boost C++ library
+==============================
+
+ Files: src/external/boost/boost/*
+
+Boost Software License - Version 1.0 - August 17th, 2003
+
+Permission is hereby granted, free of charge, to any person or organization
+obtaining a copy of the software and accompanying documentation covered by
+this license (the "Software") to use, reproduce, display, distribute,
+execute, and transmit the Software, and to prepare derivative works of the
+Software, and to permit third-parties to whom the Software is furnished to
+do so, all subject to the following:
+
+The copyright notices in the Software and this entire statement, including
+the above license grant, this restriction and the following disclaimer,
+must be included in all copies of the Software, in whole or in part, and
+all derivative works of the Software, unless such copies or derivative
+works are solely in the form of machine-executable object code generated by
+a source language processor.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
+SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
+FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
+ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+DEALINGS IN THE SOFTWARE.
+
+8. Google Test and Google Mock
+===============================
+
+ Files: src/external/gmock-1.7.0/*
+
+Copyright 2008, Google Inc.
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+ * Redistributions of source code must retain the above copyright
+notice, this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above
+copyright notice, this list of conditions and the following disclaimer
+in the documentation and/or other materials provided with the
+distribution.
+ * Neither the name of Google Inc. nor the names of its
+contributors may be used to endorse or promote products derived from
+this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
+9. Sun Extensible Data Representation routines (XDR)
+=====================================================
+
+ Files: src/gromacs/fileio/gmx_system_xdr.c
+
+Sun RPC is a product of Sun Microsystems, Inc. and is provided for
+unrestricted use provided that this legend is included on all tape
+media and as a part of the software program in whole or part. Users
+may copy or modify Sun RPC without charge, but are not authorized
+to license or distribute it to anyone else except as part of a product or
+program developed by the user.
+
+SUN RPC IS PROVIDED AS IS WITH NO WARRANTIES OF ANY KIND INCLUDING THE
+WARRANTIES OF DESIGN, MERCHANTIBILITY AND FITNESS FOR A PARTICULAR
+PURPOSE, OR ARISING FROM A COURSE OF DEALING, USAGE OR TRADE PRACTICE.
+
+Sun RPC is provided with no support and without any obligation on the
+part of Sun Microsystems, Inc. to assist in its use, correction,
+modification or enhancement.
+
+SUN MICROSYSTEMS, INC. SHALL HAVE NO LIABILITY WITH RESPECT TO THE
+INFRINGEMENT OF COPYRIGHTS, TRADE SECRETS OR ANY PATENTS BY SUN RPC
+OR ANY PART THEREOF.
+
+In no event will Sun Microsystems, Inc. be liable for any lost revenue
+or profits or other special, indirect and consequential damages, even if
+Sun has been advised of the possibility of such damages.
+
+Sun Microsystems, Inc.
+2550 Garcia Avenue
+Mountain View, California 94043
+
+
+10. Sun FDLIBM (Freely Distributable Maths Library)
+===================================================
+
+ Files: src/gromacs/math/utilities.c
+
+Copyright (C) 1993 by Sun Microsystems, Inc. All rights reserved.
+
+Developed at SunSoft, a Sun Microsystems, Inc. business.
+Permission to use, copy, modify, and distribute this
+software is freely granted, provided that this notice
+is preserved.
+
+
+11. Random123
+============================================
+
+Copyright 2010-2012, D. E. Shaw Research.
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+* Redistributions of source code must retain the above copyright
+ notice, this list of conditions, and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions, and the following disclaimer in the
+ documentation and/or other materials provided with the distribution.
+
+* Neither the name of D. E. Shaw Research nor the names of its
+ contributors may be used to endorse or promote products derived from
+ this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
+12. md5
+============================================
+
+Copyright (C) 1999, 2002 Aladdin Enterprises. All rights reserved.
+
+This software is provided 'as-is', without any express or implied
+warranty. In no event will the authors be held liable for any damages
+arising from the use of this software.
+
+Permission is granted to anyone to use this software for any purpose,
+including commercial applications, and to alter it and redistribute it
+freely, subject to the following restrictions:
+
+1. The origin of this software must not be misrepresented; you must not
+ claim that you wrote the original software. If you use this software
+ in a product, an acknowledgment in the product documentation would be
+ appreciated but is not required.
+2. Altered source versions must be plainly marked as such, and must not be
+ misrepresented as being the original software.
+3. This notice may not be removed or altered from any source distribution.
+
+L. Peter Deutsch
+ghost@aladdin.com
biod.pnpi.spb.ru / alexxy / gromacs.git / blobdiff