# This suppression file is used to run the CTest Unit Tests
# All problems in external libraries are excluded
# Memory leaks in the legacy code are excluded
# Other problems besides memory leaks should NOT be excluded for legacy code

# Ugly memory leak that depends on global variables being used to pass
# information between routines.
{
   nsc_dclm_pbc
   Memcheck:Leak
   fun:calloc
   fun:save_calloc
   fun:ico_dot_dod
   fun:make_unsp
   fun:nsc_dclm_pbc
}

{
   ctime_r
   Memcheck:Leak
   ...
   fun:ctime_r
}

{
   libz
   Memcheck:Cond
   fun:inflateReset2
   fun:inflateInit2_
}

# OpenMPI
{
   MPI_Init/Leak
   Memcheck:Leak
   ...
   fun:PMPI_Init
}
{
   MPI_Finalize/Leak
   Memcheck:Leak
   fun:malloc
   fun:ompi_proc_all
   ...
   fun:_ZN3gmx8finalizeEv
}
{
   MPI_Init/Addr4
   Memcheck:Addr4
   ...
   fun:PMPI_Init
}
{
   MPI_Init/Addr8
   Memcheck:Addr8
   ...
   fun:PMPI_Init
}
{
   MPI_Init/sched_setaffinity
   Memcheck:Param
   sched_setaffinity(mask)
   ...
   fun:PMPI_Init
}
{
   MPI_Init/writev
   Memcheck:Param
   writev(vector[...])
   ...
   fun:PMPI_Init
}

{
   gmx_fio_fopen
   Memcheck:Leak
   ...
   fun:gmx_fio_fopen
}
{
   put_symtab
   Memcheck:Leak
   ...
   fun:put_symtab
}
{
   bTimeSet/tMPI_Thread_mutex_init_once
   Memcheck:Leak
   ...
   fun:tMPI_Thread_mutex_init_once
   fun:tMPI_Thread_mutex_lock
   fun:bTimeSet
}
{
   gmx_ffclose/tMPI_Thread_mutex_init_once
   Memcheck:Leak
   ...
   fun:tMPI_Thread_mutex_init_once
   fun:tMPI_Thread_mutex_lock
   fun:gmx_ffclose
}

{
   mdrun
   Memcheck:Leak
   ...
   obj:*/mdrun*
}

{
   strdup/strtod
   Memcheck:Addr8
   fun:__GI___strncasecmp_l
   fun:____strtod_l_internal
}


#MacOS rules
{
   dyld_register_image_state_change_handler
   Memcheck:Leak
   fun:malloc
   fun:malloc
   ...
   fun:dyld_register_image_state_change_handler
}

{
   __emutls_get_address
   Memcheck:Leak
   ...
   fun:__emutls_get_address
}

{
   libSystem_initializer
   Memcheck:Leak
   ...
   fun:libSystem_initializer
}

{
   atexit
   Memcheck:Leak
   fun:malloc
   fun:atexit_register
}

{
   unw_set_reg
   Memcheck:Leak
   ...
   fun:unw_set_reg
   fun:__gxx_personality_v0
}

{
   printf
   Memcheck:Leak
   fun:malloc
   ...
   fun:__vfprintf
}

{
   printf
   Memcheck:Leak
   fun:malloc
   ...
   fun:vfprintf_l
}

{
   strtof
   Memcheck:Leak
   fun:malloc
   ...
   fun:strtof_l
}
{
   strtod
   Memcheck:Leak
   fun:malloc
   ...
   fun:strtod_l
}

{
   scanf
   Memcheck:Leak
   ...
   fun:__svfscanf_l
}

{
    localtime
    Memcheck:Leak
    ...
    fun:localtime
}

{
   __cxa_get_globals
   Memcheck:Leak
   fun:malloc
   fun:__cxa_get_globals
}
{
   __cxa_get_globals
   Memcheck:Leak
   fun:calloc
   fun:__cxa_get_globals
   fun:__cxa_throw
}

{
   _Unwind_RaiseException
   Memcheck:Leak
   fun:malloc
   ...
   fun:_Unwind_RaiseException
   fun:__cxa_throw
}
{
   posix_memalign
   Memcheck:Leak
   ...
   fun:posix_memalign
}

# Intel compiler on MacOS
{
   __cilkrts_os_mutex_create
   Memcheck:Leak
   fun:malloc
   fun:__cilkrts_os_mutex_create
}
# Intel compiler with MKL
{
   dlerror
   Memcheck:Leak
   ...
   fun:_dlerror_run
}
#Intel
{
   strlen
   Memcheck:Addr8
   fun:__intel_sse2_strlen
}
{
   strlen2
   Memcheck:Cond
   fun:__intel_sse2_strlen
}
{
   __kmpc_global_thread_num
   Memcheck:Param
   sched_setaffinity(mask)
   ...
   fun:__kmpc_global_thread_num
}
{
   __kmpc_global_thread_num2
   Memcheck:Cond
   ...
   fun:__kmpc_global_thread_num
}
{
   __kmpc_global_thread_num3
   Memcheck:Leak
   ...
   fun:__kmpc_global_thread_num
}