# # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2014, by the GROMACS development team, led by # Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, # and including many others, as listed in the AUTHORS file in the # top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License # as published by the Free Software Foundation; either version 2.1 # of the License, or (at your option) any later version. # # GROMACS is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # Lesser General Public License for more details. # # You should have received a copy of the GNU Lesser General Public # License along with GROMACS; if not, see # http://www.gnu.org/licenses, or write to the Free Software Foundation, # Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. # # If you want to redistribute modifications to GROMACS, please # consider that scientific software is very special. Version # control is crucial - bugs must be traceable. We will be happy to # consider code for inclusion in the official distribution, but # derived work must not be called official GROMACS. Details are found # in the README & COPYING files - if they are missing, get the # official version at http://www.gromacs.org. # # To help us fund GROMACS development, we humbly ask that you cite # the research papers on the package. Check out http://www.gromacs.org. # Custom build type "TSAN", to be used for compiling GROMACS # with clang 3.4 or gcc 4.8 (currently pre-release) with ThreadSanitizer # (aka "TSan") turned on, so that the tests can be run to detect data races. # # The main advantage of the clang version is that there can be a # suppressions file that acts at compile time, though there is no use of # that yet. The main advantage of the gcc version is that it can be used # with a OpenMP (if gomp is compiled with --disable-linux-futex). # # Unfortunately, out of the box Thread-MPI provokes several false # positives. One example is that tMPI_Event_t contains an atomic int # field "sync" that is initialized before thread spawn. During a # collective, this is atomically updated by the source thread, and the # update is observed by sink threads in tMPI_Event_wait, which do a # yield wait when no change has occured. This means the read can # happen before the write (by design, whether or not the read is # atomic), but the surrounding logic prevents action until the write # has happened. There is no way for the sink thread(s) to avoid # reading until the write has happened - that is the point of the # implementation. # # This ought to be able to be suppressed, but my attempts to apply # suppressions on individual functions don't suppress reporting of the # race event. Applying the suppression to the whole thread-MPI library # might work, but seems to defeat the point. We want to be able to # detect mis-use of the primitives provided by thread-MPI. # # This means there needs to be a way for this build type to trigger # the use of the generic mutex-based fallback implementation within # thread-MPI. # # Later, if a blacklist is needed, use something like # "-fsanitize-blacklist=${CMAKE_SOURCE_DIR}/cmake/thread-sanitizer.supp" # TODO find a better home for this and other suppression files set(_flags "-O1 -g -fsanitize=thread") foreach(_language C CXX) string(REPLACE "X" "+" _human_readable_language ${_language}) if (CMAKE_${_language}_COMPILER_ID MATCHES "GNU") set(CMAKE_${_language}_FLAGS_TSAN "${_flags} -pie -fPIE" CACHE STRING "${_human_readable_language} flags for thread sanitizer") else() set(CMAKE_${_language}_FLAGS_TSAN ${_flags} CACHE STRING "${_human_readable_language} flags for thread sanitizer") endif() mark_as_advanced(CMAKE_${_language}_FLAGS_TSAN) string(TOUPPER "${CMAKE_BUILD_TYPE}" _cmake_build_type) if (_cmake_build_type STREQUAL TSAN) set(TMPI_ATOMICS_DISABLED 1) set(TMPI_ATOMICS 0) if (NOT((CMAKE_${_language}_COMPILER_ID MATCHES "Clang" AND CMAKE_${_language}_COMPILER_VERSION VERSION_GREATER 3.2.999) OR (CMAKE_${_language}_COMPILER_ID MATCHES "GNU" AND CMAKE_${_language}_COMPILER_VERSION VERSION_GREATER 4.7.999))) message(FATAL_ERROR "The ThreadSanitizer build is only available with clang ${_human_readable_language} >=3.3 and gnu ${_human_readable_language} >=4.8.") endif() endif() endforeach()