BioD PNPI Git Repos - alexxy/gromacs.git/shortlog

biod.pnpi.spb.ru / alexxy / gromacs.git / shortlog

2012-11-28	Szilard Pall	use tMPI API for thread affinity setting	commit \| commitdiff \| tree \| snapshot
2012-11-28	Sander Pronk	Fixed Windows tMPI_Thread_self().	commit \| commitdiff \| tree \| snapshot
2012-11-27	Michael Shirts	Removes memory allocation from free energy foreign...	commit \| commitdiff \| tree \| snapshot
2012-11-27	Roland Schulz	Add visibility defines	commit \| commitdiff \| tree \| snapshot
2012-11-27	Erik Lindahl	Merge "Added affinity support check, visibility macros...	commit \| commitdiff \| tree \| snapshot
2012-11-27	Erik Lindahl	Merge "fixed bug in nbnxn OpenMP non-bonded force reduc...	commit \| commitdiff \| tree \| snapshot
2012-11-27	David van der...	Merge "Merge release-4-5-patches into release-4-6"...	commit \| commitdiff \| tree \| snapshot
2012-11-27	Berk Hess	fixed bug in nbnxn OpenMP non-bonded force reduction	commit \| commitdiff \| tree \| snapshot
2012-11-27	Sander Pronk	Added affinity support check, visibility macros in...	commit \| commitdiff \| tree \| snapshot
2012-11-26	Sander Pronk	Fixed issues with g_bar help text.	commit \| commitdiff \| tree \| snapshot
2012-11-26	Roland Schulz	Merge release-4-5-patches into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-11-26	Roland Schulz	Merge "Clean up some mathematical constants" into relea...	commit \| commitdiff \| tree \| snapshot
2012-11-26	Erik Lindahl	Merge "Use stat for gmx_is_file. Fix get_libdir with...	commit \| commitdiff \| tree \| snapshot
2012-11-26	Berk Hess	made nbnxn analytical Ewald consistent	commit \| commitdiff \| tree \| snapshot
2012-11-26	Mark Abraham	Clean up some mathematical constants	commit \| commitdiff \| tree \| snapshot
2012-11-26	Sander Pronk	Made the linear extrapolation in g_bar non-default...	commit \| commitdiff \| tree \| snapshot
2012-11-26	Erik Lindahl	Merge "Extended build information output and reference...	commit \| commitdiff \| tree \| snapshot
2012-11-26	David van der...	Fixes #1035 NaN in g_cluster output.	commit \| commitdiff \| tree \| snapshot
2012-11-26	Berk Hess	added nbnxn analytical Ewald correction kernels	commit \| commitdiff \| tree \| snapshot
2012-11-25	Teemu Murtola	Extended build information output and reference build...	commit \| commitdiff \| tree \| snapshot
2012-11-24	Roland Schulz	Use stat for gmx_is_file. Fix get_libdir with symlinks.	commit \| commitdiff \| tree \| snapshot
2012-11-23	Roland Schulz	Merge "removed group non-boneded call with verlet schem...	commit \| commitdiff \| tree \| snapshot
2012-11-23	Roland Schulz	Merge "improve FindGROMACS.cmake" into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-11-23	Roland Schulz	Force C++ linking of the gpu_utils	commit \| commitdiff \| tree \| snapshot
2012-11-23	Szilárd Páll	Merge "Updates to CMake treatment of OpenMP" into relea...	commit \| commitdiff \| tree \| snapshot
2012-11-23	Szilard Pall	removed group non-boneded call with verlet scheme	commit \| commitdiff \| tree \| snapshot
2012-11-23	Mark Abraham	Updates to CMake treatment of OpenMP	commit \| commitdiff \| tree \| snapshot
2012-11-23	Roland Schulz	Merge changes I88f0dcef,I86b2a8cf,I70fb7e6d into releas...	commit \| commitdiff \| tree \| snapshot
2012-11-22	Erik Lindahl	Fix for icc 13 optimization-related issue and TIP4P...	commit \| commitdiff \| tree \| snapshot
2012-11-22	Christoph Junghans	improve FindGROMACS.cmake	commit \| commitdiff \| tree \| snapshot
2012-11-22	Erik Lindahl	Implemented RMS-based force tolerance in gmxcheck	commit \| commitdiff \| tree \| snapshot
2012-11-22	Erik Lindahl	Fixed LJ-14 error in free energy	commit \| commitdiff \| tree \| snapshot
2012-11-22	Mark Abraham	Speed up mdlib compilation by reordering file globs	commit \| commitdiff \| tree \| snapshot
2012-11-22	Szilard Pall	unset MPI detection leftover cache variables	commit \| commitdiff \| tree \| snapshot
2012-11-20	Christoph Junghans	Merge "Fix g_msd -mol" into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-11-20	Christoph Junghans	Merge "Fixes bug in g_hbond that makes it produce fatal...	commit \| commitdiff \| tree \| snapshot
2012-11-20	David van der...	Fixes bug in g_hbond that makes it produce fatal error.	commit \| commitdiff \| tree \| snapshot
2012-11-20	Roland Schulz	Fix CXX/C mismatch of flag/macro for gmxCFlags	commit \| commitdiff \| tree \| snapshot
2012-11-20	Roland Schulz	Merge release-4-5-patches into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-11-20	Roland Schulz	Fix CXX/C mismatch of flag/macro for gmxCFlags	commit \| commitdiff \| tree \| snapshot
2012-11-19	Roland Schulz	Merge changes Ibc555d88,Iaf6f3051 into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-11-19	Mark Abraham	Merge "SSE4.1 single-precision kernels" into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-11-19	Mark Abraham	Minor updates to CMake usage	commit \| commitdiff \| tree \| snapshot
2012-11-19	Roland Schulz	Add CMAKE_PREFIX_PATH to cmake-gui	commit \| commitdiff \| tree \| snapshot
2012-11-19	Erik Lindahl	SSE4.1 single-precision kernels	commit \| commitdiff \| tree \| snapshot
2012-11-19	Roland Schulz	Merge "Remove double declaration in headers" into relea...	commit \| commitdiff \| tree \| snapshot
2012-11-19	Szilard Pall	always mark as advanced leftover FindCUDA variables	commit \| commitdiff \| tree \| snapshot
2012-11-18	Roland Schulz	Fix GMX_TEST_CFLAG bug with acceleration flags	commit \| commitdiff \| tree \| snapshot
2012-11-18	Roland Schulz	Fix bugs in gmxCFlags	commit \| commitdiff \| tree \| snapshot
2012-11-17	Roland Schulz	Rename remaining GMX_ACCELERATION to GMX_CPU_ACCELERATION	commit \| commitdiff \| tree \| snapshot
2012-11-17	Roland Schulz	Remove double declaration in headers	commit \| commitdiff \| tree \| snapshot
2012-11-17	David van der...	Merge "Added grompp warning" into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-11-17	David van der...	Merge "Remove rest of the xml support" into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-11-17	Roland Schulz	Merge "Removing Zn and Ar non-OPLS atom types" into...	commit \| commitdiff \| tree \| snapshot
2012-11-16	Mark Abraham	Added grompp warning	commit \| commitdiff \| tree \| snapshot
2012-11-16	Roland Schulz	Removing Zn and Ar non-OPLS atom types	commit \| commitdiff \| tree \| snapshot
2012-11-16	Christoph Junghans	Remove rest of the xml support	commit \| commitdiff \| tree \| snapshot
2012-11-16	David van der...	Merge "Removes unused files" into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-11-16	Erik Lindahl	SSE2 single-precision kernels	commit \| commitdiff \| tree \| snapshot
2012-11-16	Roland Schulz	Removes unused files	commit \| commitdiff \| tree \| snapshot
2012-11-16	Berk Hess	reduced the cost of the nbnxn OpenMP nb-force reduction	commit \| commitdiff \| tree \| snapshot
2012-11-15	Christoph Junghans	Merge "Test that compiling and linking of AVX works...	commit \| commitdiff \| tree \| snapshot
2012-11-15	Roland Schulz	Verify that FFTW can be used with shared libraries	commit \| commitdiff \| tree \| snapshot
2012-11-15	Berk Hess	fixed incorrect 1-4 energies with OpenMP + energy groups	commit \| commitdiff \| tree \| snapshot
2012-11-14	Roland Schulz	FindFFTW: Keep checking pkg_config until fftw is found	commit \| commitdiff \| tree \| snapshot
2012-11-14	Berk Hess	fixed nbnxn x86 SIMD non-bonded performance regression	commit \| commitdiff \| tree \| snapshot
2012-11-13	Erik Lindahl	Removed some unnecessary instructions, and fixed a...	commit \| commitdiff \| tree \| snapshot
2012-11-12	Roland Schulz	Test that compiling and linking of AVX works	commit \| commitdiff \| tree \| snapshot
2012-11-12	Roland Schulz	Allow to disable usage of rdtscp	commit \| commitdiff \| tree \| snapshot
2012-11-12	Roland Schulz	Merge "Backport ThreadMPI.cmake version from master...	commit \| commitdiff \| tree \| snapshot
2012-11-12	Roland Schulz	Merge "nbnxn CPU force buffer reduction now uses SIMD...	commit \| commitdiff \| tree \| snapshot
2012-11-12	Roland Schulz	Backport ThreadMPI.cmake version from master	commit \| commitdiff \| tree \| snapshot
2012-11-12	Berk Hess	nbnxn CPU force buffer reduction now uses SIMD	commit \| commitdiff \| tree \| snapshot
2012-11-12	David van der...	Fixes #1020 options in g_enemat	commit \| commitdiff \| tree \| snapshot
2012-11-11	Roland Schulz	Fix FMA4 compile for GCC and MSVC	commit \| commitdiff \| tree \| snapshot
2012-11-10	Roland Schulz	Merge "Fix broken manual formatting" into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-11-10	Roland Schulz	Fix g_msd -mol	commit \| commitdiff \| tree \| snapshot
2012-11-10	Mark Abraham	Fix broken manual formatting	commit \| commitdiff \| tree \| snapshot
2012-11-10	Teemu Murtola	Remove obsolete GMX_THREAD_SHM_FDECOMP.	commit \| commitdiff \| tree \| snapshot
2012-11-09	Roland Schulz	Fix component for libcudart	commit \| commitdiff \| tree \| snapshot
2012-11-09	Erik Lindahl	Removed old (now unused) bluegene kernels.	commit \| commitdiff \| tree \| snapshot
2012-11-09	Erik Lindahl	Removed unused old kernel generator	commit \| commitdiff \| tree \| snapshot
2012-11-09	Erik Lindahl	Removal of stale Fortran/Power6 kernels	commit \| commitdiff \| tree \| snapshot
2012-11-09	Erik Lindahl	Removal of stale Fortran kernels	commit \| commitdiff \| tree \| snapshot
2012-11-09	Kasson	Merge "only use CPU_COUNT if it's available" into relea...	commit \| commitdiff \| tree \| snapshot
2012-11-09	Szilard Pall	only use CPU_COUNT if it's available	commit \| commitdiff \| tree \| snapshot
2012-11-09	Szilard Pall	also preferentiate .lib with GMX_PREFER_STATIC_LIBS	commit \| commitdiff \| tree \| snapshot
2012-11-08	Roland Schulz	Merge "Fixed bug in the new switch-modified interaction...	commit \| commitdiff \| tree \| snapshot
2012-11-08	Christoph Junghans	Merge "auto-set nvcc host compiler with FindMPI detecti...	commit \| commitdiff \| tree \| snapshot
2012-11-08	Christoph Junghans	Merge "Relocated logic of simple-vs-GPU Ewald table...	commit \| commitdiff \| tree \| snapshot
2012-11-08	Erik Lindahl	Fixed bug in the new switch-modified interactions in...	commit \| commitdiff \| tree \| snapshot
2012-11-08	Erik Lindahl	Allow rcoulomb=rlistlong for PME with nstcalclr=1	commit \| commitdiff \| tree \| snapshot
2012-11-08	Mark Abraham	Relocated logic of simple-vs-GPU Ewald table generation	commit \| commitdiff \| tree \| snapshot
2012-11-08	Erik Lindahl	Infrastructure for new group kernels, and new C kernels	commit \| commitdiff \| tree \| snapshot
2012-11-07	Christoph Junghans	Obey DSO standard	commit \| commitdiff \| tree \| snapshot
2012-11-07	Szilard Pall	auto-set nvcc host compiler with FindMPI detection	commit \| commitdiff \| tree \| snapshot
2012-11-07	Szilard Pall	detect externally set CPU affinity	commit \| commitdiff \| tree \| snapshot
2012-11-06	Roland Schulz	Fix cmake error if compiler starts with blank line	commit \| commitdiff \| tree \| snapshot
2012-11-06	Roland Schulz	Merge "Clarification of mdp_opt, add nstexpand defaults...	commit \| commitdiff \| tree \| snapshot
2012-11-06	Berk Hess	Merge "Add option to install libcudart" into release-4-6	commit \| commitdiff \| tree \| snapshot
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