BioD PNPI Git Repos - alexxy/gromacs.git/shortlog

biod.pnpi.spb.ru / alexxy / gromacs.git / shortlog

2017-10-20	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree \| snapshot
2017-10-20	Berk Hess	Fix warning for confout with periodic molecules	commit \| commitdiff \| tree \| snapshot
2017-10-19	Szilárd Páll	Disable OpenMP with clang 3.4 post-submit config	commit \| commitdiff \| tree \| snapshot
2017-10-19	Szilárd Páll	Remove unised OpenCL debugging helpers	commit \| commitdiff \| tree \| snapshot
2017-10-18	Berk Hess	Made CUDA PME texture reference conditional	commit \| commitdiff \| tree \| snapshot
2017-10-17	David van der...	Fixed missing entries in nrnb arrays.	commit \| commitdiff \| tree \| snapshot
2017-10-16	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree \| snapshot
2017-10-15	Berk Hess	Improve vsite parallel checking	commit \| commitdiff \| tree \| snapshot
2017-10-13	Aleksei Iupinov	Relax PME spline computation tolerance in double precis...	commit \| commitdiff \| tree \| snapshot
2017-10-13	Mark Abraham	Update tests for C++11 compiler and standard library	commit \| commitdiff \| tree \| snapshot
2017-10-13	Roland Schulz	Replace all ConstArrayRef with ArrayRef<const T>	commit \| commitdiff \| tree \| snapshot
2017-10-13	Roland Schulz	Specialize ArrayRef for SimdReal	commit \| commitdiff \| tree \| snapshot
2017-10-13	Magnus Lundborg	Do not include headers related to ObservablesHistory	commit \| commitdiff \| tree \| snapshot
2017-10-13	Mark Abraham	Fix cpuinfo on clang + non-x86	commit \| commitdiff \| tree \| snapshot
2017-10-12	Szilárd Páll	Remove the size_t from the PME gather CUDA kenels	commit \| commitdiff \| tree \| snapshot
2017-10-12	Aleksei Iupinov	Remove useless extern CUDA texture reference declaratio...	commit \| commitdiff \| tree \| snapshot
2017-10-12	Aleksei Iupinov	Revert "Drop NB_ from GMX_CUDA_NB_SINGLE_COMPILATION_UN...	commit \| commitdiff \| tree \| snapshot
2017-10-12	Berk Hess	Simplify virial handling	commit \| commitdiff \| tree \| snapshot
2017-10-11	Roland Schulz	Require template parameter for load function	commit \| commitdiff \| tree \| snapshot
2017-10-11	Roland Schulz	Use tag for simdLoad	commit \| commitdiff \| tree \| snapshot
2017-10-11	Mark Abraham	Introduced header for communication to/from PME ranks	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	Fix clang warnings for PME CUDA kernels	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	Relax PME solving test complex grid tolerance	commit \| commitdiff \| tree \| snapshot
2017-10-11	Mark Abraham	Cleaned up ewaldcoeff for PME-only ranks	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	CUDA 9/Volta support for PME	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	PME solving - CUDA kernel + unit tests	commit \| commitdiff \| tree \| snapshot
2017-10-11	Paul Bauer	Change to modules for build of web documentation	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	PME force gathering - CUDA kernel + unit tests	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	Drop NB_ from GMX_CUDA_NB_SINGLE_COMPILATION_UNIT cmake...	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	PME spline+spread CUDA kernel and unit tests	commit \| commitdiff \| tree \| snapshot
2017-10-11	Mark Abraham	Use clang-5 in Jenkins	commit \| commitdiff \| tree \| snapshot
2017-10-11	Berk Hess	Disable ARM Neon native rsqrt iteration	commit \| commitdiff \| tree \| snapshot
2017-10-09	Aleksei Iupinov	Remove some unnecessary includes from PME	commit \| commitdiff \| tree \| snapshot
2017-10-09	Aleksei Iupinov	PME GPU/CUDA data framework.	commit \| commitdiff \| tree \| snapshot
2017-10-07	Mark Abraham	Tell cppcheck that .cpp and .cu files are c++	commit \| commitdiff \| tree \| snapshot
2017-10-07	Roland Schulz	Refactor load+SimdLoad*ProxyInternal to reduce duplication	commit \| commitdiff \| tree \| snapshot
2017-10-06	Berk Hess	Add acceleration correction VCM mode	commit \| commitdiff \| tree \| snapshot
2017-10-06	Berk Hess	Fix max_size() in allocator.h	commit \| commitdiff \| tree \| snapshot
2017-10-06	Berk Hess	Add SIMD intrinsics version of simple update	commit \| commitdiff \| tree \| snapshot
2017-10-06	Berk Hess	Improve PaddedRVecVector resizing	commit \| commitdiff \| tree \| snapshot
2017-10-06	Aleksei Iupinov	Add timing accumulation capability into GpuRegionTimer	commit \| commitdiff \| tree \| snapshot
2017-10-05	Berk Hess	Make SIMD ambiguous test work with float/double only	commit \| commitdiff \| tree \| snapshot
2017-10-05	Szilárd Páll	Refactor scaled box handling for PME/Ewald	commit \| commitdiff \| tree \| snapshot
2017-10-05	Szilárd Páll	Fix pair list array assertion	commit \| commitdiff \| tree \| snapshot
2017-10-05	Szilárd Páll	Avoid -Wmissing-prototypes warnings in clang CUDA builds	commit \| commitdiff \| tree \| snapshot
2017-10-05	Roland Schulz	Make ConstArrayRef alias to ArrayRef<const T>	commit \| commitdiff \| tree \| snapshot
2017-10-05	Mark Abraham	Continue removing -nb gpu_cpu	commit \| commitdiff \| tree \| snapshot
2017-10-05	Roland Schulz	Fix that exp(load(x)) is ambiguous	commit \| commitdiff \| tree \| snapshot
2017-10-04	Roland Schulz	Allow non-const access for const ArrayRef	commit \| commitdiff \| tree \| snapshot
2017-10-04	Aleksei Iupinov	Remove GPU timing functions superseded by GpuRegionTimer	commit \| commitdiff \| tree \| snapshot
2017-10-04	Berk Hess	Remove a force buffer argument from IForceProvider	commit \| commitdiff \| tree \| snapshot
2017-10-04	Mark Abraham	Enable group-scheme SIMD with GMX_SIMD=AVX2_128	commit \| commitdiff \| tree \| snapshot
2017-10-04	Aleksei Iupinov	Add GpuRegionTimer class	commit \| commitdiff \| tree \| snapshot
2017-10-03	Szilárd Páll	Move Ewald splitting-related code to ewald-utils	commit \| commitdiff \| tree \| snapshot
2017-10-03	Aleksei Iupinov	Bring CUDA texture getters documentation up-to-date	commit \| commitdiff \| tree \| snapshot
2017-10-03	Aleksei Iupinov	Template/move CUDA texture cleanup code from NB CUDA...	commit \| commitdiff \| tree \| snapshot
2017-10-03	Szilárd Páll	Enable compiling CUDA device code with clang	commit \| commitdiff \| tree \| snapshot
2017-10-03	Berk Hess	Move calling of special force functions	commit \| commitdiff \| tree \| snapshot
2017-10-03	Aleksei Iupinov	Add WinAPI page size query for allocator purposes	commit \| commitdiff \| tree \| snapshot
2017-10-03	Magnus Lundborg	Write atom masses and partial charges to TNG	commit \| commitdiff \| tree \| snapshot
2017-10-03	Mark Abraham	Introduce and use AlignedAllocationPolicy	commit \| commitdiff \| tree \| snapshot
2017-10-02	Berk Hess	Remove hybrid gpu+cpu nonbonded mode	commit \| commitdiff \| tree \| snapshot
2017-09-28	Szilárd Páll	Correct misplaced CUDA timing event record	commit \| commitdiff \| tree \| snapshot
2017-09-28	tomaskubar	QM/MM: remove optimization and trans. state search	commit \| commitdiff \| tree \| snapshot
2017-09-26	Aleksei Iupinov	Move CUDA texture setup code from NB CUDA module to...	commit \| commitdiff \| tree \| snapshot
2017-09-26	Szilárd Páll	Rename GPU launch/wait cycle counters	commit \| commitdiff \| tree \| snapshot
2017-09-25	Berk Hess	Put rerun state preparation in a function	commit \| commitdiff \| tree \| snapshot
2017-09-25	Berk Hess	Set global state on master rank only	commit \| commitdiff \| tree \| snapshot
2017-09-23	Berk Hess	Fix grompp with Andersen massive and no COM removal	commit \| commitdiff \| tree \| snapshot
2017-09-22	Aleksei Iupinov	Template the CUDA texture setup code on raw value type T	commit \| commitdiff \| tree \| snapshot
2017-09-21	Aleksei Iupinov	Eliminate unused Coulomb correction table size coulomb_...	commit \| commitdiff \| tree \| snapshot
2017-09-21	Aleksei Iupinov	Eliminate duplicate CUDA texture setup code	commit \| commitdiff \| tree \| snapshot
2017-09-21	Vedran Miletić	Document t_commrec struct	commit \| commitdiff \| tree \| snapshot
2017-09-20	Berk Hess	Change nbnxn indexing to templates	commit \| commitdiff \| tree \| snapshot
2017-09-19	Roland Schulz	ICC: Disable include path warning	commit \| commitdiff \| tree \| snapshot
2017-09-19	Mark Abraham	Update testing matrices to test with (latest) icc-18	commit \| commitdiff \| tree \| snapshot
2017-09-18	Aleksei Iupinov	Skip GPU reallocation of an empty non-local pairlist	commit \| commitdiff \| tree \| snapshot
2017-09-18	Szilárd Páll	Minor refactoring of CUDA non-bonded kernels	commit \| commitdiff \| tree \| snapshot
2017-09-17	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree \| snapshot
2017-09-15	Berk Hess	Remove nb-parameters from t_forcerec	commit \| commitdiff \| tree \| snapshot
2017-09-15	Mark Abraham	Express intent of matrix release build types explicitly	commit \| commitdiff \| tree \| snapshot
2017-09-15	Mark Abraham	Bumped patch version for next release	commit \| commitdiff \| tree \| snapshot
2017-09-15	Mark Abraham	Version 2016.4	commit \| commitdiff \| tree \| snapshot
2017-09-14	Aleksei Iupinov	Fix non-SIMD build failing	commit \| commitdiff \| tree \| snapshot
2017-09-14	Berk Hess	Fix nbnxn SIMD 2xNN PME tabulated kernel	commit \| commitdiff \| tree \| snapshot
2017-09-14	Szilárd Páll	CUDA 9/Volta support for the pruning kernel	commit \| commitdiff \| tree \| snapshot
2017-09-14	Mark Abraham	Form taskassignment module	commit \| commitdiff \| tree \| snapshot
2017-09-14	Mark Abraham	Fix compat module definition	commit \| commitdiff \| tree \| snapshot
2017-09-12	Erik Lindahl	Improve accuracy of SIMD exp for small args	commit \| commitdiff \| tree \| snapshot
2017-09-12	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree \| snapshot
2017-09-12	Aleksei Iupinov	Prevent reference XML reader segfault on nullptr error...	commit \| commitdiff \| tree \| snapshot
2017-09-12	Berk Hess	Fix exception in SIMD LJ PME solve	commit \| commitdiff \| tree \| snapshot
2017-09-12	Berk Hess	Do not pass state to init_replica_exchange	commit \| commitdiff \| tree \| snapshot
2017-09-12	Szilárd Páll	Merge branch 'release-2016'	commit \| commitdiff \| tree \| snapshot
2017-09-11	Szilárd Páll	NVIDIA Volta performance tweaks	commit \| commitdiff \| tree \| snapshot
2017-09-11	Berk Hess	Fix PBC bugs in the swap code	commit \| commitdiff \| tree \| snapshot
2017-09-09	Berk Hess	Avoid inf in SIMD double sqrt()	commit \| commitdiff \| tree \| snapshot
2017-09-08	Roland Schulz	Fix compiler warning	commit \| commitdiff \| tree \| snapshot
2017-09-07	Mark Abraham	Introduce type-safe GPU emulation variables	commit \| commitdiff \| tree \| snapshot
2017-09-07	Roland Schulz	Add isIntegralConstant type trait	commit \| commitdiff \| tree \| snapshot
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