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alexxy/gromacs.git
2017-05-26
Berk Hess
Improve Verlet buffer constraint estimate
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2017-05-23
Erik Lindahl
Updated cool quotes
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2017-05-23
Berk Hess
Add conserved quantity for Berendsen P-couple
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2017-05-23
Szilárd Páll
Add basic doxygen for the Verlet nonbonded module
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2017-05-23
Berk Hess
Add conserved q. for PR and Berendsen T-couple
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2017-05-23
Berk Hess
Make DD setup obey PME restrictions
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2017-05-22
Roland Schulz
Remove TMPI_ATOMICS from config.h
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2017-05-22
Berk Hess
Introduce ObservablesHistory container
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2017-05-16
Berk Hess
Fix confout.gro with energy minimization
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2017-05-15
Mark Abraham
Updated use of compiler specifiers in testing
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2017-05-15
Mark Abraham
Update clang static analyzer slave to use version 4
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2017-05-14
Mark Abraham
Update clang-4
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2017-05-14
Justin Lemkul
Clarifications to editconf help text.
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2017-05-11
Roland Schulz
Remove static-intel from default flags
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2017-05-11
Teemu Murtola
Generalize command-line test output file checking
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2017-05-09
Mark Abraham
Merge branch release-2016
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2017-05-09
Mark Abraham
Cleaned up memory usage in gmx traj and trjconv
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2017-05-01
David van der...
Xpm test for gmx clustsize
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2017-04-29
Carsten Kutzner
Minor header file cleanup in ED, IMD and CompEL modules
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2017-04-22
M. Eric Irrgang
ignore OS X Finder metadata
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2017-04-22
M. Eric Irrgang
sort ignored file extensions
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2017-04-22
M. Eric Irrgang
ignore g++ precompiler header output
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2017-04-22
Mark Abraham
Clean up memory usage with oenv and xvg writing
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2017-04-21
Berk Hess
Fix bugs in double AVX(2)_256 Simd4
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2017-04-19
Carsten Kutzner
Remove unused forward declarations of t_commrec in...
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2017-04-19
Berk Hess
Fix unused SIMD PME table kernel
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2017-04-18
Berk Hess
Suppress two compiler warnings
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2017-04-17
Erik Lindahl
Fixed AVX-512F compiler flags
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2017-04-17
Mark Abraham
Minor change to GPU compatibility reporting handling
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2017-04-17
Mark Abraham
Propose a post-submit matrix
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2017-04-17
Teemu Murtola
Consistent approach for whole-program tests
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2017-04-11
Teemu Murtola
Improve key-value tree gmx dump support
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2017-04-10
Vedran Miletić
Really enable avx512 in fftw only for select compilers
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2017-04-06
Teemu Murtola
Fix memory access issues in gmx solvate
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2017-04-06
Teemu Murtola
Consistent naming for gmxana tests
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2017-04-04
Teemu Murtola
Utility functions for formatting string values
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2017-04-03
Mark Abraham
Remove do_pbc_first
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2017-03-31
Mark Abraham
Merge branch release-2016
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2017-03-29
Mark Abraham
Fix parameter description for dihedral_restraints
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2017-03-29
Szilárd Páll
Refactor CUDA kernel use of tables
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2017-03-29
Szilárd Páll
Add CUDA util function for constant loads
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2017-03-25
Szilárd Páll
Conditional tweak in the nonbonded GPU kernels
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2017-03-22
Mark Abraham
Add section to user guide for managing simulations
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2017-03-19
Erik Lindahl
Use OpenMP up to 16 threads with AMD Ryzen
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2017-03-19
Erik Lindahl
128-bit AVX2 SIMD for AMD Ryzen
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2017-03-19
Mark Abraham
Fix string handling for gcc 7
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2017-03-18
Gerrit Code...
Merge "Merge branch release-2016"
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2017-03-17
Szilárd Páll
Allow bypassing OpenCL device compatibility check
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2017-03-17
M. Eric Irrgang
Add an extra verbose target for docs
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2017-03-17
Aleksei Iupinov
Fix dereferencing nullptr in PME solve work destructor
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2017-03-16
Berk Hess
Replace instance of group by coord in pull mdp docs
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2017-03-16
Szilárd Páll
Print code of unknown OpenCL error
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2017-03-14
Erik Lindahl
Fix gcc compiles of AVX-512 SIMD
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2017-03-14
Mark Abraham
Merge branch release-2016
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2017-03-14
Mark Abraham
Bumped version to prepare for next patch release
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2017-03-14
Berk Hess
Make grompp -r obligatory with posres
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2017-03-13
Mark Abraham
Version 2016.3
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2017-03-13
Mark Abraham
Modernize write_inpfile
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2017-03-13
Mark Abraham
Modernize read_inpfile
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2017-03-13
Ake Sandgren
Fix tune_pme detection of GPU support
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2017-03-13
Ake Sandgren
Fix spacing in tune_pme call to thread-mpi mdrun
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2017-03-13
Mark Abraham
Tests for grompp -f -po
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2017-03-13
Teemu Murtola
Improve option support & tests for key-value trees
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2017-03-13
Teemu Murtola
Remove manual alignment from InMemorySerializer
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2017-03-12
Teemu Murtola
Consistent TextWriter trailing whitespace handling
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2017-03-12
David van der...
Added tests for gmx clustsize.
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2017-03-11
Teemu Murtola
Update copyright year for gmx -version
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2017-03-09
Szilárd Páll
Fix mdrun hanging upon exit with sep PME ranks
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2017-03-09
Mark Abraham
Refactor GPU selection handling
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2017-03-07
Mark Abraham
Fix minor issues in gmx traj -av -af
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2017-03-04
Teemu Murtola
Remove MDModules use from mdlib
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2017-03-04
David van der...
Removes rogue printing to xvg file in gmx mindist
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2017-03-04
Teemu Murtola
Split md module facets to different interfaces
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2017-03-04
Mark Abraham
Fixes for xl compilers 13.1.5 on Power8
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2017-03-04
Vedran Miletić
Document that we now support AMD GCN on Mesa/LLVM
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2017-03-03
Aleksei Iupinov
Remove outdated CUDA version check
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2017-03-02
Carsten Kutzner
Remove unnecessary include
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2017-03-01
Vedran Miletić
Enable avx512 in fftw only if compiler supports it
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2017-02-28
Berk Hess
Add load balance fraction to DLB print
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2017-02-28
Gerrit Code...
Merge "Merge branch release-5-1 into release-2016"...
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2017-02-28
Teemu Murtola
More documentation for key-value trees
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2017-02-27
David van der...
Fixes bug in gmx solvate with -shell that yielded 0...
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2017-02-27
Teemu Murtola
Decouple t_inputrec from MDModules
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2017-02-27
Teemu Murtola
Remove module references from t_inputrec
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2017-02-25
Michael Shirts
Fix for an incorrect check that nstlog !=0
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2017-02-23
Roland Schulz
Fix compile of GMX_SIMD=None with ICC
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2017-02-21
Aleksei Iupinov
Remove unused function cu_synchstream_atdat()
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2017-02-20
Mark Abraham
Add tests for old gmx energy functionality
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2017-02-17
Mark Abraham
Use gmx::Mutex and gmx::lock_guard to fix some issues
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2017-02-15
Mark Abraham
Merge branch release-5-1 into release-2016
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2017-02-14
Mark Abraham
Fix handling of previous virials
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2017-02-14
Mark Abraham
Reduce compilation coupling
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2017-02-10
Mark Abraham
Corrected output of gmx do_dssp -sc
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2017-02-10
Roland Schulz
Remove duplicate AVX512 gather definitions
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2017-02-10
Teemu Murtola
Check log output in thread affinity tests
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2017-02-09
Teemu Murtola
Multi-rank thread affinity tests
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2017-02-09
Mark Abraham
Complete the removal of stateful RNG
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2017-02-09
Mark Abraham
Improved state_change_natoms and used it more
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2017-02-09
Erik Lindahl
Work around false xlc-13.1.5 bug in SIMD test
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2017-02-09
Mark Abraham
Remove EST_DISTR from state.h
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