BioD PNPI Git Repos - alexxy/gromacs.git/shortlog

biod.pnpi.spb.ru / alexxy / gromacs.git / shortlog

2017-11-02	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree \| snapshot
2017-11-02	Berk Hess	Add missing Ewald correction for pme-user	commit \| commitdiff \| tree \| snapshot
2017-11-01	Paul Bauer	Small change to LaTeX manual generation	commit \| commitdiff \| tree \| snapshot
2017-11-01	Mark Abraham	Fix thread-MPI rank choice for orientation restraints	commit \| commitdiff \| tree \| snapshot
2017-11-01	Aleksei Iupinov	Remove unused PME GPU declarations	commit \| commitdiff \| tree \| snapshot
2017-11-01	Aleksei Iupinov	Move pme_gpu_finish_computation() documentation to...	commit \| commitdiff \| tree \| snapshot
2017-11-01	Paul Bauer	Fixing missing references in web documentation	commit \| commitdiff \| tree \| snapshot
2017-11-01	Aleksei Iupinov	Fix erroneous PME GPU "step" namings	commit \| commitdiff \| tree \| snapshot
2017-11-01	Mark Abraham	Improve handling of GPU IDs	commit \| commitdiff \| tree \| snapshot
2017-11-01	Aleksei Iupinov	Simplify PME GPU synchronization code	commit \| commitdiff \| tree \| snapshot
2017-10-31	Aleksei Iupinov	Reuse epbcXY logic	commit \| commitdiff \| tree \| snapshot
2017-10-31	Szilárd Páll	Fix nstlist increase warning print	commit \| commitdiff \| tree \| snapshot
2017-10-31	Szilárd Páll	Check CUDA available/compiled code compatibility	commit \| commitdiff \| tree \| snapshot
2017-10-31	Mark Abraham	Update treatment of GPU compatibility data structure	commit \| commitdiff \| tree \| snapshot
2017-10-31	Szilárd Páll	Fix nstlist increase warning print	commit \| commitdiff \| tree \| snapshot
2017-10-30	David van der...	Fixed mdp output from electric field code.	commit \| commitdiff \| tree \| snapshot
2017-10-30	Aleksei Iupinov	Fix reference mode build unused function warnings	commit \| commitdiff \| tree \| snapshot
2017-10-30	Berk Hess	Remove unused sign parameter from dih_angle()	commit \| commitdiff \| tree \| snapshot
2017-10-30	Roland Schulz	ArrayRef: Replace fromVector with subArray	commit \| commitdiff \| tree \| snapshot
2017-10-30	David van der...	Added option -water tips3p to pdb2gmx.	commit \| commitdiff \| tree \| snapshot
2017-10-30	Aleksei Iupinov	Bring PME GPU/CUDA internal structure names to CamelCase	commit \| commitdiff \| tree \| snapshot
2017-10-30	Mark Abraham	Fix and update hw_info	commit \| commitdiff \| tree \| snapshot
2017-10-30	Aleksei Iupinov	Use new/delete for gmx_pme_t	commit \| commitdiff \| tree \| snapshot
2017-10-30	Aleksei Iupinov	Simplify PME data handling in runner	commit \| commitdiff \| tree \| snapshot
2017-10-29	Aleksei Iupinov	Make PME tuning logic more readable	commit \| commitdiff \| tree \| snapshot
2017-10-29	Berk Hess	Remove incorrect comment for CHARMM tips3p	commit \| commitdiff \| tree \| snapshot
2017-10-27	Aleksei Iupinov	Remove unused PME grid dump debug functions	commit \| commitdiff \| tree \| snapshot
2017-10-27	Mark Abraham	Fix hw detection more	commit \| commitdiff \| tree \| snapshot
2017-10-27	Aleksei Iupinov	Replace a few asserts with GMX_ASSERT's	commit \| commitdiff \| tree \| snapshot
2017-10-27	Aleksei Iupinov	Remove defunct PME initialization error code return	commit \| commitdiff \| tree \| snapshot
2017-10-26	Mark Abraham	Make release matrix work again	commit \| commitdiff \| tree \| snapshot
2017-10-26	Szilárd Páll	Reorganize PME GPU launch	commit \| commitdiff \| tree \| snapshot
2017-10-26	Mark Abraham	New quote	commit \| commitdiff \| tree \| snapshot
2017-10-25	Mark Abraham	Teach the copyright checker about template.cpp	commit \| commitdiff \| tree \| snapshot
2017-10-24	Berk Hess	Fix gmx check for tprs with different #atoms	commit \| commitdiff \| tree \| snapshot
2017-10-24	Aleksei Iupinov	Remove duplicate/outdated function declaration	commit \| commitdiff \| tree \| snapshot
2017-10-24	Aleksei Iupinov	Move commrec duty checking into simple getters	commit \| commitdiff \| tree \| snapshot
2017-10-23	Aleksei Iupinov	Correct the page allocator description	commit \| commitdiff \| tree \| snapshot
2017-10-23	Szilárd Páll	Eliminate some OCL/CUDA code code duplication	commit \| commitdiff \| tree \| snapshot
2017-10-23	Berk Hess	Fix incorrect dV/dlambda for walls	commit \| commitdiff \| tree \| snapshot
2017-10-23	David van der...	Split off the NMR related analyses from gmx energy.	commit \| commitdiff \| tree \| snapshot
2017-10-22	Aleksei Iupinov	Change PME GPU gather reduction argument from boolean...	commit \| commitdiff \| tree \| snapshot
2017-10-21	Berk Hess	Merge "Merge branch release-2016"	commit \| commitdiff \| tree \| snapshot
2017-10-21	Aleksei Iupinov	Add calls to the PME GPU stages	commit \| commitdiff \| tree \| snapshot
2017-10-20	Mark Abraham	Clarify docs for Fmax in EM	commit \| commitdiff \| tree \| snapshot
2017-10-20	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree \| snapshot
2017-10-20	Berk Hess	Fix warning for confout with periodic molecules	commit \| commitdiff \| tree \| snapshot
2017-10-19	Szilárd Páll	Disable OpenMP with clang 3.4 post-submit config	commit \| commitdiff \| tree \| snapshot
2017-10-19	Szilárd Páll	Remove unised OpenCL debugging helpers	commit \| commitdiff \| tree \| snapshot
2017-10-18	Berk Hess	Made CUDA PME texture reference conditional	commit \| commitdiff \| tree \| snapshot
2017-10-17	David van der...	Fixed missing entries in nrnb arrays.	commit \| commitdiff \| tree \| snapshot
2017-10-16	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree \| snapshot
2017-10-15	Berk Hess	Improve vsite parallel checking	commit \| commitdiff \| tree \| snapshot
2017-10-13	Aleksei Iupinov	Relax PME spline computation tolerance in double precis...	commit \| commitdiff \| tree \| snapshot
2017-10-13	Mark Abraham	Update tests for C++11 compiler and standard library	commit \| commitdiff \| tree \| snapshot
2017-10-13	Roland Schulz	Replace all ConstArrayRef with ArrayRef<const T>	commit \| commitdiff \| tree \| snapshot
2017-10-13	Roland Schulz	Specialize ArrayRef for SimdReal	commit \| commitdiff \| tree \| snapshot
2017-10-13	Magnus Lundborg	Do not include headers related to ObservablesHistory	commit \| commitdiff \| tree \| snapshot
2017-10-13	Mark Abraham	Fix cpuinfo on clang + non-x86	commit \| commitdiff \| tree \| snapshot
2017-10-12	Szilárd Páll	Remove the size_t from the PME gather CUDA kenels	commit \| commitdiff \| tree \| snapshot
2017-10-12	Aleksei Iupinov	Remove useless extern CUDA texture reference declaratio...	commit \| commitdiff \| tree \| snapshot
2017-10-12	Aleksei Iupinov	Revert "Drop NB_ from GMX_CUDA_NB_SINGLE_COMPILATION_UN...	commit \| commitdiff \| tree \| snapshot
2017-10-12	Berk Hess	Simplify virial handling	commit \| commitdiff \| tree \| snapshot
2017-10-11	Roland Schulz	Require template parameter for load function	commit \| commitdiff \| tree \| snapshot
2017-10-11	Roland Schulz	Use tag for simdLoad	commit \| commitdiff \| tree \| snapshot
2017-10-11	Mark Abraham	Introduced header for communication to/from PME ranks	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	Fix clang warnings for PME CUDA kernels	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	Relax PME solving test complex grid tolerance	commit \| commitdiff \| tree \| snapshot
2017-10-11	Mark Abraham	Cleaned up ewaldcoeff for PME-only ranks	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	CUDA 9/Volta support for PME	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	PME solving - CUDA kernel + unit tests	commit \| commitdiff \| tree \| snapshot
2017-10-11	Paul Bauer	Change to modules for build of web documentation	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	PME force gathering - CUDA kernel + unit tests	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	Drop NB_ from GMX_CUDA_NB_SINGLE_COMPILATION_UNIT cmake...	commit \| commitdiff \| tree \| snapshot
2017-10-11	Aleksei Iupinov	PME spline+spread CUDA kernel and unit tests	commit \| commitdiff \| tree \| snapshot
2017-10-11	Mark Abraham	Use clang-5 in Jenkins	commit \| commitdiff \| tree \| snapshot
2017-10-11	Berk Hess	Disable ARM Neon native rsqrt iteration	commit \| commitdiff \| tree \| snapshot
2017-10-09	Aleksei Iupinov	Remove some unnecessary includes from PME	commit \| commitdiff \| tree \| snapshot
2017-10-09	Aleksei Iupinov	PME GPU/CUDA data framework.	commit \| commitdiff \| tree \| snapshot
2017-10-07	Mark Abraham	Tell cppcheck that .cpp and .cu files are c++	commit \| commitdiff \| tree \| snapshot
2017-10-07	Roland Schulz	Refactor load+SimdLoad*ProxyInternal to reduce duplication	commit \| commitdiff \| tree \| snapshot
2017-10-06	Berk Hess	Add acceleration correction VCM mode	commit \| commitdiff \| tree \| snapshot
2017-10-06	Berk Hess	Fix max_size() in allocator.h	commit \| commitdiff \| tree \| snapshot
2017-10-06	Berk Hess	Add SIMD intrinsics version of simple update	commit \| commitdiff \| tree \| snapshot
2017-10-06	Berk Hess	Improve PaddedRVecVector resizing	commit \| commitdiff \| tree \| snapshot
2017-10-06	Aleksei Iupinov	Add timing accumulation capability into GpuRegionTimer	commit \| commitdiff \| tree \| snapshot
2017-10-05	Berk Hess	Make SIMD ambiguous test work with float/double only	commit \| commitdiff \| tree \| snapshot
2017-10-05	Szilárd Páll	Refactor scaled box handling for PME/Ewald	commit \| commitdiff \| tree \| snapshot
2017-10-05	Szilárd Páll	Fix pair list array assertion	commit \| commitdiff \| tree \| snapshot
2017-10-05	Szilárd Páll	Avoid -Wmissing-prototypes warnings in clang CUDA builds	commit \| commitdiff \| tree \| snapshot
2017-10-05	Roland Schulz	Make ConstArrayRef alias to ArrayRef<const T>	commit \| commitdiff \| tree \| snapshot
2017-10-05	Mark Abraham	Continue removing -nb gpu_cpu	commit \| commitdiff \| tree \| snapshot
2017-10-05	Roland Schulz	Fix that exp(load(x)) is ambiguous	commit \| commitdiff \| tree \| snapshot
2017-10-04	Roland Schulz	Allow non-const access for const ArrayRef	commit \| commitdiff \| tree \| snapshot
2017-10-04	Aleksei Iupinov	Remove GPU timing functions superseded by GpuRegionTimer	commit \| commitdiff \| tree \| snapshot
2017-10-04	Berk Hess	Remove a force buffer argument from IForceProvider	commit \| commitdiff \| tree \| snapshot
2017-10-04	Mark Abraham	Enable group-scheme SIMD with GMX_SIMD=AVX2_128	commit \| commitdiff \| tree \| snapshot
2017-10-04	Aleksei Iupinov	Add GpuRegionTimer class	commit \| commitdiff \| tree \| snapshot
2017-10-03	Szilárd Páll	Move Ewald splitting-related code to ewald-utils	commit \| commitdiff \| tree \| snapshot
2017-10-03	Aleksei Iupinov	Bring CUDA texture getters documentation up-to-date	commit \| commitdiff \| tree \| snapshot
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