BioD PNPI Git Repos - alexxy/gromacs.git/shortlog

biod.pnpi.spb.ru / alexxy / gromacs.git / shortlog

2012-07-15	David van der...	Merge "Autogenerate gromacs.7 from programs.txt" into...	commit \| commitdiff \| tree \| snapshot
2012-07-15	Roland Schulz	Adding missing entries in programs.txt	commit \| commitdiff \| tree \| snapshot
2012-07-13	Roland Schulz	Merge release-4.5-patches into HEAD	commit \| commitdiff \| tree \| snapshot
2012-07-10	Roland Schulz	Adding missing entries in programs.txt	commit \| commitdiff \| tree \| snapshot
2012-07-10	Roland Schulz	Use relative rpath to support relocatable binary packages	commit \| commitdiff \| tree \| snapshot
2012-07-10	Roland Schulz	Allow usage of relative install paths	commit \| commitdiff \| tree \| snapshot
2012-07-09	Christoph Junghans	Merge "Fixed bug in sfactor.c that makes g_rdf -sq...	commit \| commitdiff \| tree \| snapshot
2012-07-09	Jochen Hub	Fixed bug in sfactor.c that makes g_rdf -sq give wrong...	commit \| commitdiff \| tree \| snapshot
2012-07-09	Teemu Murtola	Fix memory error with complex boolean selections.	commit \| commitdiff \| tree \| snapshot
2012-07-07	Roland Schulz	Autogenerate gromacs.7 from programs.txt	commit \| commitdiff \| tree \| snapshot
2012-07-06	Erik Marklund	Bugfix for the segfault that occurs with g_hbond -hbm...	commit \| commitdiff \| tree \| snapshot
2012-07-06	Roland Schulz	Don't prevent GMX_PREFER_STATIC_LIBS with BUILD_SHARED_LIBS	commit \| commitdiff \| tree \| snapshot
2012-07-05	Roland Schulz	Build man-pages instead of distributing them in the...	commit \| commitdiff \| tree \| snapshot
2012-07-05	Christoph Junghans	Merge "Don't rerun checks and be quiet 2nd time cmake...	commit \| commitdiff \| tree \| snapshot
2012-07-05	Christoph Junghans	Merge "Allow also FindMPI for cmake<2.8.5" into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-07-05	Christoph Junghans	Merge "Finalized and extended Szilard's openMP cleanup...	commit \| commitdiff \| tree \| snapshot
2012-07-05	Roland Schulz	Don't rerun checks and be quiet 2nd time cmake is run	commit \| commitdiff \| tree \| snapshot
2012-07-04	Erik Marklund	Finalized and extended Szilard's openMP cleanup of...	commit \| commitdiff \| tree \| snapshot
2012-07-04	Roland Schulz	Merge "Add FindGROMACS.cmake to template's CMakeLists...	commit \| commitdiff \| tree \| snapshot
2012-07-04	Roland Schulz	Merge "Fixed bug in free energy calculation for Morse...	commit \| commitdiff \| tree \| snapshot
2012-07-04	Berk Hess	set default for rcoulomb, rvdw and rlist to -1	commit \| commitdiff \| tree \| snapshot
2012-07-03	Elton Carvalho	Fixed L-BFGS trajectory output.	commit \| commitdiff \| tree \| snapshot
2012-07-03	Szilárd Páll	Merge "Minor formatting and consistency changes to...	commit \| commitdiff \| tree \| snapshot
2012-07-02	Christoph Junghans	Do not print disabled pressures and virials	commit \| commitdiff \| tree \| snapshot
2012-06-30	David van der...	Fixed bug in free energy calculation for Morse potentials	commit \| commitdiff \| tree \| snapshot
2012-06-29	Christoph Junghans	Add FindGROMACS.cmake to template's CMakeLists.txt	commit \| commitdiff \| tree \| snapshot
2012-06-29	Michael Shirts	Minor formatting and consistency changes to txtdump.c	commit \| commitdiff \| tree \| snapshot
2012-06-29	Michael Shirts	Corrected checkpoint version issues with free energy...	commit \| commitdiff \| tree \| snapshot
2012-06-29	Sebastian Fritsch	Merge "Fixed adress kernel for double precision" into...	commit \| commitdiff \| tree \| snapshot
2012-06-28	Christoph Junghans	Fixed adress kernel for double precision	commit \| commitdiff \| tree \| snapshot
2012-06-28	Roland Schulz	Allow also FindMPI for cmake<2.8.5	commit \| commitdiff \| tree \| snapshot
2012-06-28	Christoph Junghans	Merge "Fix MPI build for MPI library without mpi wrappe...	commit \| commitdiff \| tree \| snapshot
2012-06-28	Roland Schulz	Fix MPI build for MPI library without mpi wrapper	commit \| commitdiff \| tree \| snapshot
2012-06-27	Szilard Pall	fixes typo gmx_omp introduced by 697bcdc	commit \| commitdiff \| tree \| snapshot
2012-06-26	Roland Schulz	Fix that rerunning cmake gives the same result as 1st run	commit \| commitdiff \| tree \| snapshot
2012-06-26	Roland Schulz	Merge "Fix gmx_fatal for serial compilation" into relea...	commit \| commitdiff \| tree \| snapshot
2012-06-25	Szilard Pall	introduce gmx_omp wrapper for the OpenMP API	commit \| commitdiff \| tree \| snapshot
2012-06-25	Berk Hess	fixed segv/hang with EM and foreign lambda values	commit \| commitdiff \| tree \| snapshot
2012-06-25	Berk Hess	added check for log fp!=NULL when disabling acceleration	commit \| commitdiff \| tree \| snapshot
2012-06-24	Christoph Junghans	Merge "Remove MPI define for FAH" into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-06-24	Michael Shirts	Merge "Fix mdp_opt formatting of expanded ensemble...	commit \| commitdiff \| tree \| snapshot
2012-06-24	Roland Schulz	Fix mdp_opt formatting of expanded ensemble	commit \| commitdiff \| tree \| snapshot
2012-06-24	Roland Schulz	Remove MPI define for FAH	commit \| commitdiff \| tree \| snapshot
2012-06-23	Roland Schulz	Fix illegal usage of MPI_Comm_create	commit \| commitdiff \| tree \| snapshot
2012-06-22	Christoph Junghans	Merge "Simple patch for openmm_wrapper.cpp" into releas...	commit \| commitdiff \| tree \| snapshot
2012-06-21	Erik Lindahl	Fixed gcc inline assembly issue with PIC and older...	commit \| commitdiff \| tree \| snapshot
2012-06-21	David van der...	Fixes #961 - Shake reports wrong error	commit \| commitdiff \| tree \| snapshot
2012-06-20	Roland Schulz	Fix gmx_fatal for serial compilation	commit \| commitdiff \| tree \| snapshot
2012-06-20	Erik Marklund	Correct normalization for HB-contact c-correlation.	commit \| commitdiff \| tree \| snapshot
2012-06-19	Mark Abraham	Merge "Fixes #882 - looping bug in trxio.c" into relea...	commit \| commitdiff \| tree \| snapshot
2012-06-19	Christoph Junghans	Merge "Quiet linker on BlueGene" into release-4-5-patches	commit \| commitdiff \| tree \| snapshot
2012-06-18	Christoph Junghans	Merge "Fix g_lie counting last frame twice" into releas...	commit \| commitdiff \| tree \| snapshot
2012-06-18	Martin Hoefling	gmx_dyecoupl: check selected groups from user	commit \| commitdiff \| tree \| snapshot
2012-06-16	Erik Lindahl	New CPU detection & AVX/SSE code, removed raw assembly...	commit \| commitdiff \| tree \| snapshot
2012-06-16	David van der...	Fixes #882 - looping bug in trxio.c	commit \| commitdiff \| tree \| snapshot
2012-06-15	Justin Lemkul	Simple patch for openmm_wrapper.cpp	commit \| commitdiff \| tree \| snapshot
2012-06-15	Mark Abraham	Quiet linker on BlueGene	commit \| commitdiff \| tree \| snapshot
2012-06-15	Erik Marklund	Makes g_hbond -contact work	commit \| commitdiff \| tree \| snapshot
2012-06-15	Mark Abraham	Fix g_lie counting last frame twice	commit \| commitdiff \| tree \| snapshot
2012-06-15	Christoph Junghans	Merge "Work around failure of endianness testing on...	commit \| commitdiff \| tree \| snapshot
2012-06-14	Roland Schulz	Merge "Made mdrun more verbose about PME split" into...	commit \| commitdiff \| tree \| snapshot
2012-06-11	Carsten Kutzner	Small fix for g_tune_pme	commit \| commitdiff \| tree \| snapshot
2012-06-08	Christoph Junghans	Merge "Added more suggested strategies to error message...	commit \| commitdiff \| tree \| snapshot
2012-06-06	Mark Abraham	Work around failure of endianness testing on BlueGene	commit \| commitdiff \| tree \| snapshot
2012-06-06	Mark Abraham	Fix endian test functionality	commit \| commitdiff \| tree \| snapshot
2012-06-04	Michael Shirts	Merging in free energy, exp. ensemble, & andersen t...	commit \| commitdiff \| tree \| snapshot
2012-06-04	Mark Abraham	Added more suggested strategies to error message	commit \| commitdiff \| tree \| snapshot
2012-06-01	Roland Schulz	Merge release-4-5-patches into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-06-01	Christoph Junghans	Merge "Use External BLAS/LAPACK by default" into releas...	commit \| commitdiff \| tree \| snapshot
2012-06-01	Christoph Junghans	Merge "Replace our fftpack version with Numpy's version...	commit \| commitdiff \| tree \| snapshot
2012-06-01	Roland Schulz	Replace our fftpack version with Numpy's version	commit \| commitdiff \| tree \| snapshot
2012-05-31	Mark Abraham	Made mdrun more verbose about PME split	commit \| commitdiff \| tree \| snapshot
2012-05-30	Teemu Murtola	Fix use after free in g_anaeig projection code.	commit \| commitdiff \| tree \| snapshot
2012-05-29	Sander Pronk	Removed dependency on windows.h through commrec.h,...	commit \| commitdiff \| tree \| snapshot
2012-05-29	Christoph Junghans	Merge "Revised g_tune_pme" into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-05-28	Christoph Junghans	Merge "Continuing to fix threading on Cygwin" into...	commit \| commitdiff \| tree \| snapshot
2012-05-27	Roland Schulz	Fix editconf real-bool misusage	commit \| commitdiff \| tree \| snapshot
2012-05-27	David van der...	Merge "added explicit sqrtf to the float version of...	commit \| commitdiff \| tree \| snapshot
2012-05-27	Roland Schulz	Fix Clang 3.1 warning	commit \| commitdiff \| tree \| snapshot
2012-05-26	Mark Abraham	Continuing to fix threading on Cygwin	commit \| commitdiff \| tree \| snapshot
2012-05-25	Roland Schulz	Make load_vmd_library static	commit \| commitdiff \| tree \| snapshot
2012-05-25	Roland Schulz	Made all vmdio headers private	commit \| commitdiff \| tree \| snapshot
2012-05-25	Roland Schulz	Merge "fixed [dd] and [TT] typos in documentation of...	commit \| commitdiff \| tree \| snapshot
2012-05-25	David van der...	Merge "grompp now retains the order of bonds converted...	commit \| commitdiff \| tree \| snapshot
2012-05-25	Martin Hoefling	fixed [dd] and [TT] typos in documentation of mdrun...	commit \| commitdiff \| tree \| snapshot
2012-05-25	Christoph Junghans	Merge "Fix that sigaction mask wasn't zeroed" into...	commit \| commitdiff \| tree \| snapshot
2012-05-24	Berk Hess	now mdrun always initializes MPI	commit \| commitdiff \| tree \| snapshot
2012-05-24	Teemu Murtola	Merge "Code cleanup to avoid name collisions" into...	commit \| commitdiff \| tree \| snapshot
2012-05-23	Carsten Kutzner	Revised g_tune_pme	commit \| commitdiff \| tree \| snapshot
2012-05-23	Roland Schulz	Fix that sigaction mask wasn't zeroed	commit \| commitdiff \| tree \| snapshot
2012-05-23	Roland Schulz	Code cleanup to avoid name collisions	commit \| commitdiff \| tree \| snapshot
2012-05-22	Roland Schulz	Use External BLAS/LAPACK by default	commit \| commitdiff \| tree \| snapshot
2012-05-22	Szilard Pall	added explicit sqrtf to the float version of norm	commit \| commitdiff \| tree \| snapshot
2012-05-21	Berk Hess	grompp now retains the order of bonds converted to...	commit \| commitdiff \| tree \| snapshot
2012-05-21	Berk Hess	re-introduced fix for real/double issue in gmx_density	commit \| commitdiff \| tree \| snapshot
2012-05-18	Roland Schulz	Rename BOOL to EBOOL	commit \| commitdiff \| tree \| snapshot
2012-05-17	Teemu Murtola	Merge "Fixing more clang warnings" into release-4-6	commit \| commitdiff \| tree \| snapshot
2012-05-17	Maarten Wolf	mv membed.h from include to src/kernel	commit \| commitdiff \| tree \| snapshot
2012-05-16	Roland Schulz	Fixing more clang warnings	commit \| commitdiff \| tree \| snapshot
2012-05-09	Christoph Junghans	Merge "Backporting "moving membed to mdrun" from master...	commit \| commitdiff \| tree \| snapshot
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