BioD PNPI Git Repos - alexxy/gromacs.git/shortlog

biod.pnpi.spb.ru / alexxy / gromacs.git / shortlog

2010-08-23	Rossen Apostolov	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree \| snapshot
2010-08-23	Rossen Apostolov	Fixed a typo about non-existing macro in OpenMM	commit \| commitdiff \| tree \| snapshot
2010-08-23	Christoph Junghans	Fixed threads flags in pc files for autotools	commit \| commitdiff \| tree \| snapshot
2010-08-23	Berk Hess	removed the pdb2gmx -cwd option and updated the pdb2gmx...	commit \| commitdiff \| tree \| snapshot
2010-08-23	Berk Hess	pdb2gmx now prints the force field dir before the selec...	commit \| commitdiff \| tree \| snapshot
2010-08-23	Mark Abraham	Two spelling fixes in comment and output	commit \| commitdiff \| tree \| snapshot
2010-08-23	Pär Bjelkmar	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree \| snapshot
2010-08-23	Pär Bjelkmar	Added CT3 termini and minor edit in doc file.	commit \| commitdiff \| tree \| snapshot
2010-08-23	Berk Hess	fixed mpi hang/crash with separate pme nodes and dd...	commit \| commitdiff \| tree \| snapshot
2010-08-23	Sander Pronk	Completely removed all occurrences of 'inline' for...	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Fixed uninitialized variable error in GB kernel with...	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Fixed an unsigned/signed integer comparison	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Fixed two more instances of strcasecmp->gmx_strcasecmp	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Copied SSE intrinsics kernels from x86-64 to ia32	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Replaced all occurences of str(n)casecmp with gmx_str...	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Fixed stupid mistake where a statement was placed befor...	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Replaced testing of git version with testing for features	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Fixed naming problems for double precision Fortran...	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Fixed a typo in futil.h	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Cleaned up all installed headers to remove strict depen...	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Removed some unnecessary #ifdefs from string2.h; all...	commit \| commitdiff \| tree \| snapshot
2010-08-22	David van der...	Fixed bug 417.	commit \| commitdiff \| tree \| snapshot
2010-08-22	Erik Lindahl	Amber force fields now pass validation. Beta status...	commit \| commitdiff \| tree \| snapshot
2010-08-21	Erik Lindahl	Added F77 kernel setup headers	commit \| commitdiff \| tree \| snapshot
2010-08-21	Erik Lindahl	Fixed synchronization counter update for f77 kernels	commit \| commitdiff \| tree \| snapshot
2010-08-21	Erik Lindahl	Fixed a bug for GB OBC born radius calculation in SSE2...	commit \| commitdiff \| tree \| snapshot
2010-08-21	Erik Lindahl	Fixed an uninitialized variable bug	commit \| commitdiff \| tree \| snapshot
2010-08-21	Erik Lindahl	Fixed a minor bug that caused Fortran builds to fail...	commit \| commitdiff \| tree \| snapshot
2010-08-21	Erik Lindahl	Dont write nonpolar surface energy to energy file if...	commit \| commitdiff \| tree \| snapshot
2010-08-21	Erik Lindahl	Fixed so Fortran kernels work again	commit \| commitdiff \| tree \| snapshot
2010-08-21	Erik Lindahl	Upgraded to latest autoconf platform detection scripts	commit \| commitdiff \| tree \| snapshot
2010-08-21	Erik Lindahl	Fixed a chain rule error in double prec. SSE2 GB for...	commit \| commitdiff \| tree \| snapshot
2010-08-21	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree \| snapshot
2010-08-21	Erik Lindahl	Double precision SSE2 kernels for Generalized Born...	commit \| commitdiff \| tree \| snapshot
2010-08-20	Sander Pronk	Added support for new mdp options controlling free...	commit \| commitdiff \| tree \| snapshot
2010-08-20	Berk Hess	added function do_cpte_n_reals to checkpoint.c	commit \| commitdiff \| tree \| snapshot
2010-08-20	Berk Hess	fixed automated DD/PME grid decomposition choice which...	commit \| commitdiff \| tree \| snapshot
2010-08-20	Berk Hess	disabled optimized IBM BlueGene converts2ints macro...	commit \| commitdiff \| tree \| snapshot
2010-08-20	Berk Hess	increased tpx_generation which should have been done...	commit \| commitdiff \| tree \| snapshot
2010-08-20	Berk Hess	eneconv now copies the new delta_t entry	commit \| commitdiff \| tree \| snapshot
2010-08-20	Berk Hess	added dt to energy file frames	commit \| commitdiff \| tree \| snapshot
2010-08-20	Berk Hess	added free and some comment to deprecated close_trj	commit \| commitdiff \| tree \| snapshot
2010-08-20	Berk Hess	fixed segv's in g_anaeig	commit \| commitdiff \| tree \| snapshot
2010-08-19	David van der...	Fixes more misery in function skipstr, where pointers...	commit \| commitdiff \| tree \| snapshot
2010-08-19	David van der...	Added two missing include files. Fixed horrible coding...	commit \| commitdiff \| tree \| snapshot
2010-08-19	Sander Pronk	Fixed get_libdir() PATH search.	commit \| commitdiff \| tree \| snapshot
2010-08-19	Rossen Apostolov	Enable the Reference platform for OpenMM.	commit \| commitdiff \| tree \| snapshot
2010-08-19	Michael Shirts	Additional fixes to the nsttcouple and nstpcouple worki...	commit \| commitdiff \| tree \| snapshot
2010-08-19	Michael Shirts	Additional changes for setting nsttcouple	commit \| commitdiff \| tree \| snapshot
2010-08-19	Michael Shirts	Fix for readir.c so that nstpcouple and nsttcouple...	commit \| commitdiff \| tree \| snapshot
2010-08-19	Michael Shirts	Fixed bug with md-vv and with v-rescale	commit \| commitdiff \| tree \| snapshot
2010-08-19	Michael Shirts	Proposed fix for v-rescale and berendsen for velocity...	commit \| commitdiff \| tree \| snapshot
2010-08-19	Michael Shirts	Merge branch 'release-4-5-patches' of git@git.gromacs...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Erik Lindahl	Updated GB SSE2 kernels, testing in progress now...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Michael Shirts	Merge branch 'release-4-5-patches' of git@git.gromacs...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Erik Lindahl	Modified atom order in Amber nucleotide improper torsio...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Erik Lindahl	Modified improper torsion atom order in Amber TRP resid...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Rossen Apostolov	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Rossen Apostolov	Fixed the execution order in OpenMM so that the generat...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Sander Pronk	Cmake tests for SIGUSR1	commit \| commitdiff \| tree \| snapshot
2010-08-18	Rossen Apostolov	Preserve the .pl extentions to scripts.	commit \| commitdiff \| tree \| snapshot
2010-08-18	Christoph Junghans	cmake: do not suffix scripts	commit \| commitdiff \| tree \| snapshot
2010-08-18	Christoph Junghans	cmake: add so version to libs	commit \| commitdiff \| tree \| snapshot
2010-08-18	Christoph Junghans	cmake: make demux.pl and xplor2gmx.pl being installed...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Christoph Junghans	port lib suffixes to cmake	commit \| commitdiff \| tree \| snapshot
2010-08-18	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Erik Lindahl	Fix to write GB and surface energy to separate terms...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Berk Hess	reduced the warning limit for Berendsen T-coupling...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Michael Shirts	Merge branch 'release-4-5-patches' of git@git.gromacs...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Michael Shirts	Changed the way energy conservation bookeeping is done.	commit \| commitdiff \| tree \| snapshot
2010-08-18	Berk Hess	removed the bNEMD boolean from the main MD loop and...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Berk Hess	added some comment to group grompp assignment options	commit \| commitdiff \| tree \| snapshot
2010-08-18	Berk Hess	added group comparison to gmxcheck and print groups...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Erik Lindahl	Enabled double precision all-vs-all kernels. Tested...	commit \| commitdiff \| tree \| snapshot
2010-08-18	Berk Hess	fixed possible pathe string buffer overflow in get_libdir	commit \| commitdiff \| tree \| snapshot
2010-08-18	Erik Lindahl	Fixed simple typo in last commit	commit \| commitdiff \| tree \| snapshot
2010-08-18	Erik Lindahl	Fixed previous nasm-segv bug for intel-syntax SSE in...	commit \| commitdiff \| tree \| snapshot
2010-08-17	Erik Lindahl	Fixed 64-bit bug in SSE assembly (only visible with...	commit \| commitdiff \| tree \| snapshot
2010-08-17	Erik Lindahl	Worked around an internal compiler error for MSVC when...	commit \| commitdiff \| tree \| snapshot
2010-08-17	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree \| snapshot
2010-08-17	Erik Lindahl	Deprecated -ins option to g_hbond since nobody seems...	commit \| commitdiff \| tree \| snapshot
2010-08-17	Sander Pronk	Fixed thread_mpi inline assembly issue and non-optimize...	commit \| commitdiff \| tree \| snapshot
2010-08-17	Sander Pronk	fsync fix for FAH core.	commit \| commitdiff \| tree \| snapshot
2010-08-17	Erik Lindahl	Copied all-vs-all change from x86-64 to ia32 kernels too	commit \| commitdiff \| tree \| snapshot
2010-08-17	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree \| snapshot
2010-08-17	Erik Lindahl	Fixed potential error in coulomb energy, and maybe...	commit \| commitdiff \| tree \| snapshot
2010-08-17	Michael Shirts	Merge branch 'release-4-5-patches' of git@git.gromacs...	commit \| commitdiff \| tree \| snapshot
2010-08-17	Christoph Junghans	store custom GMX defines in pkgconfig files for cmake	commit \| commitdiff \| tree \| snapshot
2010-08-17	Christoph Junghans	fixed some out of srcdir build issue with cmake and...	commit \| commitdiff \| tree \| snapshot
2010-08-17	Christoph Junghans	store custom GMX defines in pkgconfig files for autotools	commit \| commitdiff \| tree \| snapshot
2010-08-17	Christoph Junghans	split libs in Template.mak	commit \| commitdiff \| tree \| snapshot
2010-08-17	Christoph Junghans	make cmake install a CMakeLists.txt for the template...	commit \| commitdiff \| tree \| snapshot
2010-08-17	Berk Hess	added function rescale_velocities	commit \| commitdiff \| tree \| snapshot
2010-08-17	Roland Schulz	Use always DIR_SEPARATOR	commit \| commitdiff \| tree \| snapshot
2010-08-17	Roland Schulz	Fix two Windows futil bugs:	commit \| commitdiff \| tree \| snapshot
2010-08-17	Roland Schulz	fixed spelling mistake introduced by 303d4543	commit \| commitdiff \| tree \| snapshot
2010-08-16	Rossen Apostolov	Removed the nb_kernel4xx_intel_syntax.c entries from...	commit \| commitdiff \| tree \| snapshot
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