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alexxy/gromacs.git
2016-02-06
Mark Abraham
Merge branch release-5-1
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2016-02-03
Berk Hess
Replaced literals in nbnxn lists by ints
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2016-02-03
Mark Abraham
Bumped patch number to prepare for future 5.1.3 release
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2016-02-03
Mark Abraham
Version 5.1.2
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2016-02-03
Berk Hess
Fix mdrun removing Verlet buffer with EM
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2016-02-03
Mark Abraham
Fix grompp not warning when .mdp values have wrong...
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2016-02-03
Berk Hess
Fix SETTLE error handling
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2016-02-03
Mark Abraham
Merge release-5-0 into release-5-1
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2016-02-03
Mark Abraham
Fix dEkin/dl handling with multiple ranks
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2016-02-02
Viveca Lindahl
Added pull potential flat-bottom-high
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2016-02-01
Gerrit Code...
Merge "Merge branch release-5-1"
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2016-02-01
Teemu Murtola
Handle pdbinfo in AtomsBuilder
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2016-01-29
Berk Hess
Added documentation for pme grid indexing
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2016-01-29
Berk Hess
Fix TPI ignoring PME mesh contributions.
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2016-01-29
Berk Hess
Update -ntomp_pme -npme check
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2016-01-29
Berk Hess
Add check for double perturbation
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2016-01-29
Berk Hess
Fix LINCS triangle constraint thread issue
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2016-01-28
Mark Abraham
Merge branch release-5-1
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2016-01-28
Mark Abraham
Fix use of __APPLE__ in OpenCL code
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2016-01-28
Teemu Murtola
Update build scripts to releng changes
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2016-01-28
Gerrit Code...
Merge "Merge branch release-5-1"
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2016-01-28
Mark Abraham
Add OpenCL source file types to copyright checker
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2016-01-28
Berk Hess
Update pair-list buffer manual
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2016-01-28
Mark Abraham
Avoid FP exception
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2016-01-28
Vedran Miletić
OpenCL: use new defines (*_POW2_EXPONENT -> *_LOG2)
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2016-01-27
Mark Abraham
Merge branch release-5-1
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2016-01-27
Mark Abraham
Remove bNotLastFrame
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2016-01-27
Mark Abraham
Add suggestions for updating binutils
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2016-01-26
Szilárd Páll
GPU code reorganization and tweaks
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2016-01-26
Mark Abraham
Fix default for GMX_USE_NVML
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2016-01-25
Mark Abraham
Merge branch release-5-1
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2016-01-24
Mark Abraham
Fix duplicate LaTeX equation label
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2016-01-24
Berk Hess
Fix exact continuation from non-energy steps
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2016-01-24
Berk Hess
Fix energy file continuation with md-vv
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2016-01-24
Mark Abraham
Update references to HTML and online documentation
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2016-01-24
Teemu Murtola
Document limitations on 32-bit Linux
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2016-01-24
Berk Hess
Fix energy average with continuation
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2016-01-20
Szilárd Páll
Merge remote-tracking branch 'origin/release-5-1' into...
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2016-01-20
David van der...
Couple of new quotes
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2016-01-20
Carsten Kutzner
Made g_tune_pme work with -cpi -deffnm combination
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2016-01-20
Ansgar Esztermann
Add missing initialization in nbnxn_pairlist_t
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2016-01-14
Mark Abraham
Permit customized testing of grompp and mdrun
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2016-01-13
Mark Abraham
Allowed NVML support to be toggled
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2016-01-12
Mark Abraham
Merge branch release-5-0 into release-5-1
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2016-01-12
Teemu Murtola
Make GMX_MPI always defined to 0/1
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2016-01-12
Teemu Murtola
Move flags out of t_trxframe
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2016-01-12
Teemu Murtola
Remove historical times from t_trxframe
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2016-01-12
Teemu Murtola
Support passing tarball MD5 for webpage build
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2016-01-12
Teemu Murtola
Remove vmdplugin from t_trxframe
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2016-01-11
Teemu Murtola
Convert more config.h defines to 0/1
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2016-01-11
Mark Abraham
Improved update_coords
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2016-01-10
Teemu Murtola
Support trajectory analysis with any atom subset
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2016-01-10
Teemu Murtola
Support frames with atom subsets in selections
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2016-01-10
Teemu Murtola
Support arbitrary subset trajectories in poscalc.*
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2016-01-10
Teemu Murtola
Make file names in fatal error messages more robust
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2016-01-10
Teemu Murtola
Do not warn about missing OpenMP with GMX_GPU=OFF
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2016-01-10
Teemu Murtola
More config.h macros to 0/1
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2016-01-10
Teemu Murtola
Convert some config.h macros to use 0/1
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2016-01-09
Szilárd Páll
split NBNXN CUDA kernels into four compilation units
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2016-01-08
Berk Hess
Fix PME load balancing skipping a setup
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2016-01-08
Mark Abraham
Improve tpr header version handling
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2016-01-08
Mark Abraham
Merge branch release-5-1
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2016-01-07
Mark Abraham
Fix some mdrun header dependencies
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2016-01-07
Mark Abraham
Avoid more C++ bindings for MPI
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2016-01-07
Mark Abraham
Document how potential-switch works
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2016-01-07
Mark Abraham
Stop using UNDEFINED as name of a symbol
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2016-01-07
Mark Abraham
Remove fields used only for SD2
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2016-01-07
Mark Abraham
Backport md-vv fixes
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2016-01-07
Mark Abraham
Remove SD2 integrator
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2016-01-07
David van der...
Made normal modes work with shells and vsites
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2016-01-07
Michael Shirts
Fixes two problems related to restarts for vv.
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2016-01-06
Mark Abraham
Fix spurious gcc warning
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2016-01-05
Teemu Murtola
Update packaging build
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2016-01-05
Mark Abraham
Fix logic for DD missing-interactions check
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2016-01-05
Szilard Pall
remove duplicate macros and enable Wundef in CUDA
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2016-01-05
Mark Abraham
Use EXPECT_TRUE and EXPECT_FALSE in new SIMD tests
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2016-01-04
Erik Lindahl
Fix unnecessary SIMD warning
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2016-01-04
Mark Abraham
Change GMX_DOUBLE to be always defined
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2016-01-01
Szilard Pall
Fix xlc+CUDA workaround in gmxManageNvccConfig
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2015-12-31
Teemu Murtola
Report used defines in check-source
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2015-12-29
Berk Hess
Correct vector check of gmx check
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2015-12-29
Teemu Murtola
Packaging build script for web site
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2015-12-29
Teemu Murtola
Reduce inputrec.h dependencies
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2015-12-28
Mark Abraham
Create invertmatrix.h
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2015-12-28
Mark Abraham
Merge branch release-5-1
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2015-12-27
Erik Lindahl
Extended SIMD, implementation for Intel MIC
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2015-12-27
Teemu Murtola
Improve text writing in help output
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2015-12-27
Roland Schulz
Fix G++ 4.7.0
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2015-12-27
Teemu Murtola
Source packaging with new releng
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2015-12-27
Teemu Murtola
Further vec.h cleanup
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2015-12-27
Mark Abraham
Fix some OpenCL issues
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2015-12-27
Berk Hess
Reorganized domdec initialization
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2015-12-27
Erik Lindahl
Avoid using aligned member variables in SIMD tests
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2015-12-26
Alexey Shvetsov
Make moleculetype case sensitive
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2015-12-26
Szilard Pall
Improve documentation on OpenCL issue with NVIDIA
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2015-12-26
Teemu Murtola
Clean up vec.h
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2015-12-24
Mark Abraham
Moved responsibility for f_global
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2015-12-24
Mark Abraham
Shell code cleanup
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2015-12-24
Erik Lindahl
Extended SIMD, implementation for IBM Power7/8 VSX
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2015-12-24
Erik Lindahl
IBM Power6 VMX extended SIMD
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