BioD PNPI Git Repos - alexxy/gromacs.git/shortlog

biod.pnpi.spb.ru / alexxy / gromacs.git / shortlog

2013-05-08	Berk Hess	fixed incorrect scaling of cos-acceleration viscosity	commit \| commitdiff \| tree \| snapshot
2013-05-02	David van der...	Fixes #1238 g_hydorder does not call set_pbc.	commit \| commitdiff \| tree \| snapshot
2013-04-29	Carsten Kutzner	Evaluate enforced rotation potenial with Verlet, fixes...	commit \| commitdiff \| tree \| snapshot
2013-04-29	Mark Abraham	Merge "Update linking to MKL and document same" into...	commit \| commitdiff \| tree \| snapshot
2013-04-29	Mark Abraham	Merge "general SIMD acceleration for angles+dihedrals...	commit \| commitdiff \| tree \| snapshot
2013-04-29	Mark Abraham	Merge "PME load balancing now checks for PME grid restr...	commit \| commitdiff \| tree \| snapshot
2013-04-29	Berk Hess	general SIMD acceleration for angles+dihedrals	commit \| commitdiff \| tree \| snapshot
2013-04-29	Mark Abraham	Merge "Fixing a problem with dh/dl 1-4 interactions...	commit \| commitdiff \| tree \| snapshot
2013-04-26	Mark Abraham	Merge "CUDA PME kernels with analytical Ewald correctio...	commit \| commitdiff \| tree \| snapshot
2013-04-26	Berk Hess	PME load balancing now checks for PME grid restrictions	commit \| commitdiff \| tree \| snapshot
2013-04-26	Mark Abraham	Merge "improved load balancing with Verlet cut-off...	commit \| commitdiff \| tree \| snapshot
2013-04-26	Michael Shirts	Fixing a problem with dh/dl 1-4 interactions	commit \| commitdiff \| tree \| snapshot
2013-04-26	Mark Abraham	Update linking to MKL and document same	commit \| commitdiff \| tree \| snapshot
2013-04-26	Christoph Junghans	Merge "v-rescale works with tau-t >= 0" into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-04-25	Mark Abraham	Merge "Merge branch 'release-4-5-patches'" into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-04-22	Mark Abraham	Merge "Use git snapshots of the tests if are on git...	commit \| commitdiff \| tree \| snapshot
2013-04-19	Mark Abraham	v-rescale works with tau-t >= 0	commit \| commitdiff \| tree \| snapshot
2013-04-19	Teemu Murtola	Merge branch 'release-4-5-patches'	commit \| commitdiff \| tree \| snapshot
2013-04-18	Berk Hess	changed mdrun -nsteps to gmx_large_int_t	commit \| commitdiff \| tree \| snapshot
2013-04-17	Szilard Pall	CUDA PME kernels with analytical Ewald correction	commit \| commitdiff \| tree \| snapshot
2013-04-16	Christoph Junghans	Use git snapshots of the tests if are on git	commit \| commitdiff \| tree \| snapshot
2013-04-16	David van der...	Merge "corrected grompp rvdw charge-group radii check...	commit \| commitdiff \| tree \| snapshot
2013-04-13	David van der...	Merge "added mdrun check for Verlet+perturbed atoms...	commit \| commitdiff \| tree \| snapshot
2013-04-12	Berk Hess	improved load balancing with Verlet cut-off scheme	commit \| commitdiff \| tree \| snapshot
2013-04-12	Mark Abraham	Merge "removed x86 specifics from nbnxn SIMD kernels...	commit \| commitdiff \| tree \| snapshot
2013-04-12	Mark Abraham	Merge "corrected log file wall time breakdown" into...	commit \| commitdiff \| tree \| snapshot
2013-04-12	Mark Abraham	Merge "made PME work with a mix of 1 and more threads...	commit \| commitdiff \| tree \| snapshot
2013-04-10	Teemu Murtola	Fix another bug in selection subexpression handling.	commit \| commitdiff \| tree \| snapshot
2013-04-10	Teemu Murtola	Fix bug in selection subexpression handling.	commit \| commitdiff \| tree \| snapshot
2013-04-10	Teemu Murtola	Merge "Merge release-4-5-patches into release-4-6"...	commit \| commitdiff \| tree \| snapshot
2013-03-29	Christoph Junghans	Merge "Added install guide section for BLAS/LAPACK...	commit \| commitdiff \| tree \| snapshot
2013-03-27	Berk Hess	removed x86 specifics from nbnxn SIMD kernels	commit \| commitdiff \| tree \| snapshot
2013-03-27	Berk Hess	corrected log file wall time breakdown	commit \| commitdiff \| tree \| snapshot
2013-03-26	Roland Schulz	Merge release-4-5-patches into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-03-21	Berk Hess	made PME work with a mix of 1 and more threads	commit \| commitdiff \| tree \| snapshot
2013-03-19	Christoph Junghans	Merge "Essential dynamics: fixed legend in ED .xvg...	commit \| commitdiff \| tree \| snapshot
2013-03-14	Berk Hess	corrected grompp rvdw charge-group radii check	commit \| commitdiff \| tree \| snapshot
2013-03-12	Mark Abraham	Merge "fix broken things in mkhtml" into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-03-11	Mark Abraham	Added install guide section for BLAS/LAPACK	commit \| commitdiff \| tree \| snapshot
2013-03-11	Mark Abraham	Merge "Fixes linkage with FFTW + MKL for BLAS/LAPACK...	commit \| commitdiff \| tree \| snapshot
2013-03-08	Carsten Kutzner	Essential dynamics: fixed legend in ED .xvg output...	commit \| commitdiff \| tree \| snapshot
2013-03-07	David van der...	Fixes #1183 PBC bug in g_mindist	commit \| commitdiff \| tree \| snapshot
2013-03-06	Roland Schulz	Merge "fixed PME time print with -ntomp_pme != -ntomp...	commit \| commitdiff \| tree \| snapshot
2013-03-05	Mark Abraham	New patch release 4.6.1	commit \| commitdiff \| tree \| snapshot
2013-03-05	Mark Abraham	Fix automated regression testing GMXLIB value	commit \| commitdiff \| tree \| snapshot
2013-03-05	Berk Hess	fixed bug with DD cut-off check and PME DLB	commit \| commitdiff \| tree \| snapshot
2013-03-05	Mark Abraham	Fix regressiontests automated download	commit \| commitdiff \| tree \| snapshot
2013-03-05	Berk Hess	fixed recent bug with sorting atoms for GPUs	commit \| commitdiff \| tree \| snapshot
2013-03-05	Mark Abraham	Update shell completions	commit \| commitdiff \| tree \| snapshot
2013-03-05	Mark Abraham	Update outdated admin things	commit \| commitdiff \| tree \| snapshot
2013-03-05	Roland Schulz	Fixes linkage with FFTW + MKL for BLAS/LAPACK	commit \| commitdiff \| tree \| snapshot
2013-03-05	Justin Lemkul	Fixes for install guide page.	commit \| commitdiff \| tree \| snapshot
2013-03-05	Mark Abraham	Updated install guide	commit \| commitdiff \| tree \| snapshot
2013-03-05	Mark Abraham	Warn if X11 was not found and the user wanted it	commit \| commitdiff \| tree \| snapshot
2013-03-05	Mark Abraham	fix broken things in mkhtml	commit \| commitdiff \| tree \| snapshot
2013-03-02	Christoph Junghans	Merge "Uncrustified code changes since 4.6" into releas...	commit \| commitdiff \| tree \| snapshot
2013-02-28	Peter Kasson	Declaration-definition consistency nbxn_cuda_wait_gpu.	commit \| commitdiff \| tree \| snapshot
2013-02-26	Berk Hess	fixed PME time print with -ntomp_pme != -ntomp	commit \| commitdiff \| tree \| snapshot
2013-02-26	Mark Abraham	Uncrustified code changes since 4.6	commit \| commitdiff \| tree \| snapshot
2013-02-25	Michael Shirts	fix imcompatibility with tpr vers<64 with free energy...	commit \| commitdiff \| tree \| snapshot
2013-02-20	Berk Hess	added mdrun check for Verlet+perturbed atoms	commit \| commitdiff \| tree \| snapshot
2013-02-20	Christoph Junghans	Bump shared object version to 8	commit \| commitdiff \| tree \| snapshot
2013-02-20	Berk Hess	fixed issues with FEP soft-core and cut-off's	commit \| commitdiff \| tree \| snapshot
2013-02-20	Mark Abraham	Merge release-4-5-patches into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-02-18	Berk Hess	fixed GPU particle gridding performance issue	commit \| commitdiff \| tree \| snapshot
2013-02-18	Carsten Kutzner	Made g_tune_pme work with 4.6 if user sets "-p" command...	commit \| commitdiff \| tree \| snapshot
2013-02-18	Mark Abraham	Fix CMake namespace pollution	commit \| commitdiff \| tree \| snapshot
2013-02-18	Roland Schulz	Issue errors/warnings for ICC before 12.0.0	commit \| commitdiff \| tree \| snapshot
2013-02-15	Michael Shirts	bugfix for md-vv + nose-hoover + (nstcalcenergy > nsttc...	commit \| commitdiff \| tree \| snapshot
2013-02-15	Mark Abraham	Use explicit kernel pointer typecasts	commit \| commitdiff \| tree \| snapshot
2013-02-15	Mark Abraham	Merge "Minor fixes to Verlet kernels" into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-02-15	Mark Abraham	Bump shared object version to 7	commit \| commitdiff \| tree \| snapshot
2013-02-15	Mark Abraham	Merge "improved PME load balancing reporting" into...	commit \| commitdiff \| tree \| snapshot
2013-02-15	Mark Abraham	Merge "Re-generated group kernels" into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-02-15	Mark Abraham	Merge "Unwinds flag dependencies in g_order." into...	commit \| commitdiff \| tree \| snapshot
2013-02-15	David van der...	Merge "Fixed an initialization issue in gmx_dipoles...	commit \| commitdiff \| tree \| snapshot
2013-02-15	Mark Abraham	Merge "use legacy CUDA non-bonded kernels only on Fermi...	commit \| commitdiff \| tree \| snapshot
2013-02-15	Mark Abraham	Merge "More descriptive Verlet kernel macro parameter...	commit \| commitdiff \| tree \| snapshot
2013-02-15	Sander Pronk	Fixed an initialization issue in gmx_dipoles.	commit \| commitdiff \| tree \| snapshot
2013-02-15	Berk Hess	improved PME load balancing reporting	commit \| commitdiff \| tree \| snapshot
2013-02-15	Mark Abraham	Minor fixes to Verlet kernels	commit \| commitdiff \| tree \| snapshot
2013-02-15	Peter Kasson	Unwinds flag dependencies in g_order.	commit \| commitdiff \| tree \| snapshot
2013-02-15	Mark Abraham	Merge "Fix and add Verlet kernel error messages" into...	commit \| commitdiff \| tree \| snapshot
2013-02-13	Sander Pronk	Merge "Fix code bug with thread-MPI on PowerPC with...	commit \| commitdiff \| tree \| snapshot
2013-02-13	Roland Schulz	Merge "Fixed the MPI recognition string in g_tune_pme...	commit \| commitdiff \| tree \| snapshot
2013-02-13	Roland Schulz	Merge "improve setup of multiple tf tables" into releas...	commit \| commitdiff \| tree \| snapshot
2013-02-13	David van der...	Plain text quotes.	commit \| commitdiff \| tree \| snapshot
2013-02-13	Mark Abraham	Fix code bug with thread-MPI on PowerPC with xlc	commit \| commitdiff \| tree \| snapshot
2013-02-13	Mark Abraham	More descriptive Verlet kernel macro parameter names	commit \| commitdiff \| tree \| snapshot
2013-02-13	Mark Abraham	Fix and add Verlet kernel error messages	commit \| commitdiff \| tree \| snapshot
2013-02-13	Mark Abraham	Re-generated group kernels	commit \| commitdiff \| tree \| snapshot
2013-02-13	Sander Pronk	Added extra check in for setaffinity support.	commit \| commitdiff \| tree \| snapshot
2013-02-13	Carsten Kutzner	Fixed the MPI recognition string in g_tune_pme	commit \| commitdiff \| tree \| snapshot
2013-02-13	Roland Schulz	Merge "Updated FindGSL.cmake to version written by...	commit \| commitdiff \| tree \| snapshot
2013-02-12	Mark Abraham	Merge "PME-only counters are now reset with -maxh ...	commit \| commitdiff \| tree \| snapshot
2013-02-12	Christoph Junghans	Updated FindGSL.cmake to version written by me.	commit \| commitdiff \| tree \| snapshot
2013-02-12	Mark Abraham	Merge "fixed bug with sd integrator and OpenMP threadin...	commit \| commitdiff \| tree \| snapshot
2013-02-12	Mark Abraham	Merge "Fix CUDA_HOST_COMPILER flag name" into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-02-10	Szilárd Páll	use legacy CUDA non-bonded kernels only on Fermi	commit \| commitdiff \| tree \| snapshot
2013-02-09	Roland Schulz	Merge "Typo fix" into release-4-6	commit \| commitdiff \| tree \| snapshot
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