BioD PNPI Git Repos - alexxy/gromacs.git/shortlog

biod.pnpi.spb.ru / alexxy / gromacs.git / shortlog

2017-12-04	Berk Hess	Merge "Merge branch release-2016 into release-2018...	commit \| commitdiff \| tree \| snapshot
2017-12-04	Mark Abraham	Fix free_gpu	commit \| commitdiff \| tree \| snapshot
2017-12-04	Berk Hess	Fixed initial temperature reporting	commit \| commitdiff \| tree \| snapshot
2017-12-04	Mark Abraham	Fix unused variables in CPU pruning kernels	commit \| commitdiff \| tree \| snapshot
2017-12-04	Mark Abraham	Merge branch release-2016 into release-2018	commit \| commitdiff \| tree \| snapshot
2017-12-04	Berk Hess	Update mdrun signal help text	commit \| commitdiff \| tree \| snapshot
2017-12-04	Berk Hess	Only stop at nstlist steps with -reprod	commit \| commitdiff \| tree \| snapshot
2017-12-04	Erik Lindahl	Fix compilation issues for AVX-512	commit \| commitdiff \| tree \| snapshot
2017-12-03	Berk Hess	Clear vsite velocities for simple integrators	commit \| commitdiff \| tree \| snapshot
2017-12-03	Mark Abraham	Fix fft5d pinning	commit \| commitdiff \| tree \| snapshot
2017-12-03	Berk Hess	Tighten B-spline moduli single precision test tolerance...	commit \| commitdiff \| tree \| snapshot
2017-12-02	Berk Hess	Avoid assertion failure in AWH	commit \| commitdiff \| tree \| snapshot
2017-11-30	Viveca Lindahl	Correct AWH input file name in documentation	commit \| commitdiff \| tree \| snapshot
2017-11-29	Berk Hess	Change the GPU SMT cut-off to quadratic	commit \| commitdiff \| tree \| snapshot
2017-11-28	Erik Lindahl	Fix AVX-512 SIMD test for C	commit \| commitdiff \| tree \| snapshot
2017-11-28	Mark Abraham	GROMACS 2018 first beta release	commit \| commitdiff \| tree \| snapshot
2017-11-28	Berk Hess	Update documention of Nose-Hoover output	commit \| commitdiff \| tree \| snapshot
2017-11-28	Berk Hess	Refactor nbnxn exclusion setting	commit \| commitdiff \| tree \| snapshot
2017-11-28	Berk Hess	Extend grompp missing energy term message	commit \| commitdiff \| tree \| snapshot
2017-11-28	Aleksei Iupinov	Replace of pmeGPU variable name with pmeGpu	commit \| commitdiff \| tree \| snapshot
2017-11-28	Szilárd Páll	Separate local GPU NB wait from emulation launch	commit \| commitdiff \| tree \| snapshot
2017-11-28	Szilárd Páll	Refactor GPU rolling prune launch	commit \| commitdiff \| tree \| snapshot
2017-11-28	Erik Lindahl	Improve status messages for SIMD checks	commit \| commitdiff \| tree \| snapshot
2017-11-27	Roland Schulz	Fix bugs introduced in c4cd996	commit \| commitdiff \| tree \| snapshot
2017-11-27	Szilárd Páll	Time FFT/gather in mixed mode	commit \| commitdiff \| tree \| snapshot
2017-11-27	Aleksei Iupinov	Do not force separate PME rank to recompute reciprocal...	commit \| commitdiff \| tree \| snapshot
2017-11-27	Erik Lindahl	Test more AVX-512F instructions before enabling support	commit \| commitdiff \| tree \| snapshot
2017-11-27	Aleksei Iupinov	Disable failing separate PME rank tests	commit \| commitdiff \| tree \| snapshot
2017-11-27	Aleksei Iupinov	Add tests for PME tuning and fix mixed PME mode with...	commit \| commitdiff \| tree \| snapshot
2017-11-27	Berk Hess	Enable auto thread pinning with thread limiting	commit \| commitdiff \| tree \| snapshot
2017-11-27	Paul Bauer	Add GPU task information to user-guide	commit \| commitdiff \| tree \| snapshot
2017-11-27	Berk Hess	Fix PME GPU with walls	commit \| commitdiff \| tree \| snapshot
2017-11-25	Berk Hess	Fix compiler warning without MPI	commit \| commitdiff \| tree \| snapshot
2017-11-24	Aleksei Iupinov	Destroy PME GPU context	commit \| commitdiff \| tree \| snapshot
2017-11-24	Aleksei Iupinov	Enable separate PME GPU rank	commit \| commitdiff \| tree \| snapshot
2017-11-24	Aleksei Iupinov	Do not call mixed CPU+GPU PME mode "Hybrid"	commit \| commitdiff \| tree \| snapshot
2017-11-24	Aleksei Iupinov	Activate mixed mode of PME on GPU	commit \| commitdiff \| tree \| snapshot
2017-11-24	Berk Hess	Disabled CUDA timings	commit \| commitdiff \| tree \| snapshot
2017-11-24	Szilárd Páll	Add GPU sharing post-submit config	commit \| commitdiff \| tree \| snapshot
2017-11-24	Mark Abraham	Update developer guide	commit \| commitdiff \| tree \| snapshot
2017-11-24	Mark Abraham	Activate PME on GPUs	commit \| commitdiff \| tree \| snapshot
2017-11-24	Aleksei Iupinov	Remove outdated (already implemented) pinning TODO	commit \| commitdiff \| tree \| snapshot
2017-11-24	Berk Hess	Speed up nbnxn buffer clearing	commit \| commitdiff \| tree \| snapshot
2017-11-24	Mark Abraham	Separate management of GPU contexts from modules	commit \| commitdiff \| tree \| snapshot
2017-11-24	Erik Lindahl	Detect AVX-512 FMA units to choose best SIMD	commit \| commitdiff \| tree \| snapshot
2017-11-24	Mark Abraham	Add PME integration test	commit \| commitdiff \| tree \| snapshot
2017-11-24	Mark Abraham	Extend task assignment code	commit \| commitdiff \| tree \| snapshot
2017-11-24	Aleksei Iupinov	Mention gmx_install_headers() in the developer manual	commit \| commitdiff \| tree \| snapshot
2017-11-24	Aleksei Iupinov	Make FFT real-space grid use CUDA pinning for mixed...	commit \| commitdiff \| tree \| snapshot
2017-11-24	Berk Hess	Limit SMT with PME on GPU	commit \| commitdiff \| tree \| snapshot
2017-11-24	Aleksei Iupinov	Pin coordinates, forces and charges for PME on GPU	commit \| commitdiff \| tree \| snapshot
2017-11-23	Berk Hess	Update note in manual on SD	commit \| commitdiff \| tree \| snapshot
2017-11-23	Berk Hess	Correct PME GPU timing naming	commit \| commitdiff \| tree \| snapshot
2017-11-23	Szilárd Páll	Move GPU FFT/gather launch after GPU nonbondeds	commit \| commitdiff \| tree \| snapshot
2017-11-22	Pascal Merz	Proof of concept: Physical validation suite	commit \| commitdiff \| tree \| snapshot
2017-11-22	Viveca Lindahl	Fixed typo and adds corrects units in the friction...	commit \| commitdiff \| tree \| snapshot
2017-11-22	Viveca Lindahl	Added friction tensor to AWH manual section	commit \| commitdiff \| tree \| snapshot
2017-11-21	Mark Abraham	Use much less PaddedRVecVector and more ArrayRef of...	commit \| commitdiff \| tree \| snapshot
2017-11-21	Aleksei Iupinov	Fix CUDA release build warning	commit \| commitdiff \| tree \| snapshot
2017-11-21	Aleksei Iupinov	Fix pinned memory status checker tests	commit \| commitdiff \| tree \| snapshot
2017-11-21	Erik Lindahl	Separate SIMD flag detection from management	commit \| commitdiff \| tree \| snapshot
2017-11-21	Mark Abraham	Support pinning in HostAllocator	commit \| commitdiff \| tree \| snapshot
2017-11-21	Viveca Lindahl	Add force correlation to AWH module	commit \| commitdiff \| tree \| snapshot
2017-11-21	Paul Bauer	First general additions to the documentation	commit \| commitdiff \| tree \| snapshot
2017-11-20	Viveca Lindahl	Add reading and writing to AWH module	commit \| commitdiff \| tree \| snapshot
2017-11-20	Berk Hess	Prevent PME tuning excessive grid scaling	commit \| commitdiff \| tree \| snapshot
2017-11-20	Mark Abraham	Fix nightly matrix config	commit \| commitdiff \| tree \| snapshot
2017-11-19	Berk Hess	Add SIMD for AWH	commit \| commitdiff \| tree \| snapshot
2017-11-19	Viveca Lindahl	Add AWH section to manual.	commit \| commitdiff \| tree \| snapshot
2017-11-19	Viveca Lindahl	Add AWH biasing module + tests	commit \| commitdiff \| tree \| snapshot
2017-11-19	Mark Abraham	Fix FindCUDA.cmake for -Wundef	commit \| commitdiff \| tree \| snapshot
2017-11-18	Magnus Lundborg	Added Magnus Lundborg as contributor in the manual.	commit \| commitdiff \| tree \| snapshot
2017-11-18	Aleksei Iupinov	Asynchronous CUDA transfers are asserted to always...	commit \| commitdiff \| tree \| snapshot
2017-11-17	Mark Abraham	Use HostAllocationPolicy for chargeA	commit \| commitdiff \| tree \| snapshot
2017-11-17	Mark Abraham	Add checking function for whether a buffer is pinned	commit \| commitdiff \| tree \| snapshot
2017-11-17	Mark Abraham	Improve handling of PME GPU force buffer	commit \| commitdiff \| tree \| snapshot
2017-11-17	Aleksei Iupinov	Make gpu_utils-test build with GMX_CLANG_CUDA	commit \| commitdiff \| tree \| snapshot
2017-11-16	Berk Hess	Also print 1x1 pair-list setup to log	commit \| commitdiff \| tree \| snapshot
2017-11-15	Aleksei Iupinov	Rename and expose "generic" GPU memory transfer functions	commit \| commitdiff \| tree \| snapshot
2017-11-12	Erik Lindahl	Only issue FFT warning messages on changes	commit \| commitdiff \| tree \| snapshot
2017-11-10	Roland Schulz	PME-gather: 4xN SIMD	commit \| commitdiff \| tree \| snapshot
2017-11-10	Mark Abraham	Import cmake Modules/FindCUDA.cmake	commit \| commitdiff \| tree \| snapshot
2017-11-10	Berk Hess	Fix genion charge summation accuracy	commit \| commitdiff \| tree \| snapshot
2017-11-10	Roland Schulz	Rename load1DualHsimd to loadU1DualHsimd	commit \| commitdiff \| tree \| snapshot
2017-11-10	Roland Schulz	AVX: Improve load1DualHsimd	commit \| commitdiff \| tree \| snapshot
2017-11-10	Roland Schulz	Revert "Use -mavx2 -mfma instead of -march with AVX2"	commit \| commitdiff \| tree \| snapshot
2017-11-09	Aleksei Iupinov	Rename synchronous GPU transfer functions to match...	commit \| commitdiff \| tree \| snapshot
2017-11-09	Mark Abraham	Prepared t_mdatoms for using vector	commit \| commitdiff \| tree \| snapshot
2017-11-09	Mark Abraham	Introduce HostAllocationPolicy	commit \| commitdiff \| tree \| snapshot
2017-11-09	Roland Schulz	ICC should use ZMM if code anyhow uses ZMM	commit \| commitdiff \| tree \| snapshot
2017-11-08	Roland Schulz	Fix scalar blend	commit \| commitdiff \| tree \| snapshot
2017-11-08	Magnus Lundborg	Update to TNG v 1.8.1	commit \| commitdiff \| tree \| snapshot
2017-11-07	Szilárd Páll	Use -mavx2 -mfma instead of -march with AVX2	commit \| commitdiff \| tree \| snapshot
2017-11-07	Mark Abraham	Reform gmx_pme_pp alloc and use vector	commit \| commitdiff \| tree \| snapshot
2017-11-07	Mark Abraham	Introduce gmxopencl.h	commit \| commitdiff \| tree \| snapshot
2017-11-07	Szilárd Páll	Merge common nbnxn CUDA/OpenCL GPU wait code-paths	commit \| commitdiff \| tree \| snapshot
2017-11-07	Mark Abraham	Test clang on ARM in nightly matrix	commit \| commitdiff \| tree \| snapshot
2017-11-07	Szilárd Páll	Add wallcycle timer for the PME GPU F reduction	commit \| commitdiff \| tree \| snapshot
2017-11-07	Szilárd Páll	Split off nbnxn GPU timing and staging reduction	commit \| commitdiff \| tree \| snapshot
2017-11-07	Mark Abraham	Improve PME includes	commit \| commitdiff \| tree \| snapshot
next

Local GROMACS mirror with custom stuff

RSS Atom