| 2010-10-29 |
Szilard Pall | fixed make install-mdrun issue (bug #605) |
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| 2010-10-29 |
Szilard Pall | (re)added "-dev" suffix for the CMake hardcoded version... |
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| 2010-10-29 |
Szilard Pall | added CMake option GMX_PREFER_STATIC_LIBS (also fixes... |
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| 2010-10-28 |
David van der... | Merge branch 'release-4-5-patches' of git.gromacs.org... |
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| 2010-10-28 |
Per Larsson | Fixed a bug in the all-vs-all sse gb kernels, where... |
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| 2010-10-28 |
Berk Hess | added HEM to HEME renaming for Gromos and Charmm ff's |
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| 2010-10-28 |
Berk Hess | fixed pdb2gmx chain merging bug (bugzilla 544) |
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| 2010-10-27 |
hess | changed fftw2_empty to fftw3_empty in gmx_fft_fftw3.c |
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| 2010-10-26 |
Berk Hess | fixed cycle print type cast issue on certain platforms... |
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| 2010-10-24 |
Mark Abraham | Don't sprintf variable-sized input into fixed-size... |
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| 2010-10-22 |
Mark Abraham | Re-enabled for BlueGene/L an optimization in the BG... |
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| 2010-10-22 |
Mark Abraham | Rearranged cmake+BlueGene solution to have the same... |
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| 2010-10-22 |
Mark Abraham | Made GMX_POWERPC_INVSQRT work properly on Power6 and... |
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| 2010-10-22 |
Mark Abraham | Power6 FORTRAN kernels do not work on PPC440 or PPC450... |
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| 2010-10-22 |
Mark Abraham | Fixing a trivial mangle introduced in b5d842ff1d94174b6... |
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| 2010-10-22 |
Carsten Kutzner | Fixed segv in g_potential. Field output has now also... |
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| 2010-10-22 |
Per Larsson | Added a check in grompp for the case with particles... |
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| 2010-10-21 |
Berk Hess | clarified make_ndx error message |
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| 2010-10-20 |
Mark Abraham | Fixed cmake to work with BlueGene/L. This fix does... |
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| 2010-10-20 |
Sander Pronk | file reading error messages in g_bar less confusing. |
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| 2010-10-20 |
Per Larsson | Removed code for calculating logarithms using a table |
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| 2010-10-19 |
Berk Hess | changed enxio warning into fatal errors by default... |
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| 2010-10-19 |
Per Larsson | Fixed a compiler warning introduced by commit 9ccc786e4... |
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| 2010-10-19 |
Per Larsson | Replaced _mm_castsi128_pd with gmx_mm_castsi128_pd... |
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| 2010-10-18 |
Per Larsson | Double precision GB energies are now summed corrently... |
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| 2010-10-18 |
Sander Pronk | Tries recovery during errors in .edr files. |
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| 2010-10-18 |
Sander Pronk | Better time checks in .edrs wihtout version numbers. |
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| 2010-10-18 |
Sander Pronk | More stringent .edr file data checks. |
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| 2010-10-18 |
Berk Hess | fixed atom type name case for methanol.itp in gromos43a1.ff |
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| 2010-10-18 |
Teemu Murtola | Use CMake install for install-mdrun (bugs #549, #555) |
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| 2010-10-18 |
Berk Hess | fixed possible overflow of unused variable in lincs |
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| 2010-10-18 |
Berk Hess | added checks for rare events that would make variables... |
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| 2010-10-15 |
Berk Hess | more fixes for TPI with PME, now really fixed bugzilla 590 |
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| 2010-10-13 |
Berk Hess | fixed g_velacc -m not automatically using -s |
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| 2010-10-13 |
Teemu Murtola | Fixed selection problems with a minus sign. |
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| 2010-10-13 |
Teemu Murtola | Fixed valgrind warnings in selections. |
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| 2010-10-13 |
Teemu Murtola | Fixed more selection negation segfaults. |
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| 2010-10-13 |
Teemu Murtola | Fixed segfaults with negations in selections. |
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| 2010-10-13 |
Roland Schulz | make sure that the MANPATH is not set to only GMXMANPATH |
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| 2010-10-12 |
Berk Hess | added note to g_density for using g_energy for normal... |
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| 2010-10-12 |
Berk Hess | fixed incorrect dispersion correction for TPI with... |
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| 2010-10-11 |
Roland Schulz | fixed spelling |
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| 2010-10-09 |
Erik Lindahl | Merge branch 'release-4-5-patches' of git.gromacs.org... |
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| 2010-10-09 |
Erik Lindahl | Fixed uninitialized variable warning in grompp.c |
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| 2010-10-09 |
Roland Shulz | fixed d3b582c73 |
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| 2010-10-09 |
Roland Shulz | fixed 624db1bb |
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| 2010-10-08 |
Berk Hess | fixed typo in checkpoint warning |
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| 2010-10-08 |
Berk Hess | made combination of tpi and pme work again in parallel |
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| 2010-10-08 |
Berk Hess | fixed combination of tpic with pme, pme mesh energy... |
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| 2010-10-08 |
David van der... | Merge branch 'release-4-5-patches' of git.gromacs.org... |
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| 2010-10-08 |
Christoph Junghans | CMake: another fortran fix |
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| 2010-10-08 |
Sander Pronk | Now really fixed locking of log file. |
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| 2010-10-08 |
Roland Schulz | fixed locking of log file - broken by d750b9ce |
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| 2010-10-07 |
hess | Made Charmm27 DNA and RNA termini (Michel Cuendet)... |
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| 2010-10-07 |
Sander Pronk | cmake LIB environment variable check, and GMXRC check... |
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| 2010-10-07 |
David van der... | Fixed compilation issues with C99 compatibility. |
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| 2010-10-07 |
David van der... | Fixes and small additions to g_wham, due to Jochen... |
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| 2010-10-07 |
hess | fixed genbox producing incorrect residue names with... |
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| 2010-10-07 |
Roland Schulz | added a comment about assumptions of aligned memory |
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| 2010-10-06 |
Christoph Junghans | CMake: fortran fix |
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| 2010-10-06 |
Szilard Pall | fixed syntax error from commit bd5b2724 |
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| 2010-10-05 |
Christoph Junghans | cmake: give openmm default suffixes |
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| 2010-10-05 |
Christoph Junghans | cmake: install-mdrun should not install pkg-config... |
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| 2010-10-05 |
Sander Pronk | Modified FORTRAN and threads warning. |
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| 2010-10-05 |
Szilard Pall | improved option compatibility checking with OpenMM |
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| 2010-10-05 |
Berk Hess | made grompp mdp input file non-optional, fixes bugzilla 577 |
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| 2010-10-05 |
Berk Hess | added fail-safe check for OpenMM with double precision |
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| 2010-10-05 |
Berk Hess | renamed mdp setting Ace-approx to Ace-approximation |
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| 2010-10-05 |
Berk Hess | fixed completely incorrect pressure scaling with nstlis... |
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| 2010-10-05 |
Mark Abraham | Fix manual references for 'continuation', rather than... |
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| 2010-10-05 |
Mark Abraham | mk_dlist() changed its parameter list, so its declarati... |
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| 2010-10-04 |
Roland Schulz | fix broken check for dlopen (by Christoph Junghans... |
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| 2010-10-01 |
Roland Schulz | fix FFTW3 interface for non aligned memory |
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| 2010-10-01 |
Szilard Pall | make install-mdrun now installes shared libs (fix for... |
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| 2010-09-30 |
Christoph Junghans | configure: added '--disable-la-files' option |
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| 2010-09-30 |
Berk Hess | changed the grompp charge group radii to always check... |
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| 2010-09-30 |
Sander Pronk | Error message on enabling FORTRAN and threads. |
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| 2010-09-30 |
Roland Schulz | made vmdio work with older api version (e.g. vmd 1... |
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| 2010-09-28 |
David van der... | Re-added g_kinetics to src/tools/Makefile.am |
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| 2010-09-27 |
Roland Schulz | include "error.h" was not neccessary and caused problem... |
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| 2010-09-26 |
Roland Schulz | 1) gmx_fio_seek was not returning correct return value... |
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| 2010-09-25 |
Rossen Apostolov | Reverted changes to md_openmm.c, get rid of 'nan' in... |
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| 2010-09-25 |
David van der... | Added software-related quote |
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| 2010-09-25 |
Rossen Apostolov | mdrun-gpu now doesn't output individual energy term... |
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| 2010-09-25 |
Berk Hess | fixed case of opls atom types in share/top/ions.itp... |
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| 2010-09-24 |
David van der... | Updated to reflect bug 557. |
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| 2010-09-23 |
Mark Abraham | Fixes for g_chi for bugzilla 569, so that it now uses... |
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| 2010-09-23 |
Mark Abraham | Extensions to the gmx_residuetypes_t API to meet the... |
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| 2010-09-23 |
Roland Schulz | vmdio read the box but didn't mark it as beeing read... |
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| 2010-09-22 |
Roland Shulz | MCH3S was missing |
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| 2010-09-22 |
Sander Pronk | Added missing includes to gmx_tune_pme.c |
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| 2010-09-22 |
Berk Hess | added a warning/note for bond oscillational periods... |
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| 2010-09-21 |
Berk Hess | added check for tau_t<=0 with integrator sd |
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| 2010-09-21 |
Berk Hess | fixed incorrect gmxcheck comparison of ir->separate_dhd... |
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| 2010-09-21 |
Carsten Kutzner | Added missing #ifdef around MPI directive |
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| 2010-09-21 |
Rossen Apostolov | Fixed missing installation of the openmm_api_wrapper... |
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| 2010-09-21 |
Berk Hess | improved the initial guess and fitting weights for... |
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| 2010-09-21 |
Berk Hess | removed g_analyze confusing fitting messages about... |
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| 2010-09-20 |
Szilard Pall | FindFFT?[F] scripts can use a path provided in FFTWx... |
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| 2010-09-20 |
Berk Hess | fixed too small fixed array in grompp top reading ... |
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