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alexxy/gromacs.git
2017-12-22
Mark Abraham
Merge branch release-2016 into release-2018
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2017-12-21
Mark Abraham
Merge branch release-5-1 into release-2016
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2017-12-21
Mark Abraham
Bump minor version for theoretical new release
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2017-12-21
Pascal Merz
Documentation and fixes for physical validation
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2017-12-21
Mark Abraham
Update double-precision test configurations
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2017-12-21
Mark Abraham
Version 5.1.5
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2017-12-21
Roland Schulz
Update checks for BuildOwnFFT
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2017-12-20
Aleksei Iupinov
Set GMX_GPU_AUTO to FALSE with GMX_GPU defined
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2017-12-20
Mark Abraham
Use new defaultRealTolerance() to stabilise some tests
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2017-12-20
Mark Abraham
Merge "Merge branch release-2016 into release-2018...
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2017-12-20
Mark Abraham
Merge branch release-2016 into release-2018
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2017-12-20
Aleksei Iupinov
Remove potentially wrong "per user request" note from...
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2017-12-19
Berk Hess
Make acceleration correction VCM mode work
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2017-12-19
Mark Abraham
Third beta release of 2018
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2017-12-19
Mark Abraham
Fix table tests and improve table construction
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2017-12-19
Berk Hess
Make oversubscription warning consistent
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2017-12-19
Carsten Kutzner
Fix electric field .mdp documentation
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2017-12-19
Erik Lindahl
Use reduced default tolerances for tpx comparison
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2017-12-18
Roland Schulz
Fix cmake error with emacs lock files in place
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2017-12-17
Roland Schulz
Fix typo introduced in b1b1163a245
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2017-12-17
Roland Schulz
Change avx_128_fma build to double
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2017-12-17
Roland Schulz
Support Simd4N for SimdRealWidth<4
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2017-12-15
Roland Schulz
Remove incorrect/misleading OpenMP message
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2017-12-15
Roland Schulz
Revert "Use table Ewald for Skylake"
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2017-12-15
Mark Abraham
Make OpenCL implementation of gpu_utils tests conform
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2017-12-14
Mark Abraham
Avoid confusing message at end of non-dynamical runs
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2017-12-14
Mark Abraham
Fix return values of frame-reading functions
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2017-12-14
Berk Hess
Require -ntmpi with setting -ntomp with GPUs
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2017-12-14
Mark Abraham
Make AVX-512 CMake detction work
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2017-12-14
Paul Bauer
Remove PBC before generating TPR with group scheme
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2017-12-14
Roland Schulz
Simplify CMAP loop
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2017-12-14
Erik Lindahl
Work around AVX-512 issues in gcc-5.4 and 7.1
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2017-12-14
Erik Lindahl
Fix PBC error in gmx_spatial
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2017-12-14
Mark Abraham
Merge "Merge branch release-2016 into release-2018...
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2017-12-12
Erik Lindahl
Documented power spectrum to gmx velacc
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2017-12-12
Roland Schulz
Add work-around for ICC 18.0/.1
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2017-12-12
Erik Lindahl
Require TPR file for gmx cluster
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2017-12-12
Erik Lindahl
Disallow ascii formats for gmx trjcat
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2017-12-12
Mark Abraham
Improve grompp missing-parameters error message
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2017-12-12
Berk Hess
Check for large energy at first step
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2017-12-12
Mark Abraham
Merge branch release-2016 into release-2018
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2017-12-12
Berk Hess
Avoid yelling about thread pinning twice
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2017-12-12
Roland Schulz
Fix shift usage for KNC
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2017-12-11
Mark Abraham
Second beta release of 2018
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2017-12-11
Erik Lindahl
Remove duplicated lines from OPLS ffbonded.itp
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2017-12-11
Paul Bauer
Fewer messages when -cpi file is not present
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2017-12-11
Roland Schulz
Replace intrinsic with inline asm for AVX512 unit test
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2017-12-11
Erik Lindahl
Don't warn about NVML clocks that are at max
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2017-12-11
Mark Abraham
Leave NVML use off by default
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2017-12-11
Mark Abraham
Check for GPU detection support before detecting
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2017-12-11
Paul Bauer
Disallow combination of PME-user and verlet cutoff
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2017-12-11
Mark Abraham
Consume any error produced during GPU detection
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2017-12-11
Mark Abraham
Avoid signed-overflow warning with gcc 7
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2017-12-11
Mark Abraham
Remove SIMD shift operators
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2017-12-11
Berk Hess
Add grompp note for PR pcouple + position restraints
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2017-12-10
Erik Lindahl
Revert "Disable default-on NVML support in CMake"
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2017-12-10
Berk Hess
Remove SIMD warning for AMD Zen
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2017-12-10
Berk Hess
Tone down note about not pinning threads
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2017-12-10
Szilárd Páll
Disable default-on NVML support in CMake
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2017-12-08
Mark Abraham
Refine ulp tolerances for some more ewald tests
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2017-12-08
Berk Hess
Correct Shake test tolerances
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2017-12-08
Berk Hess
Add Viveca Lindahl as contributor
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2017-12-08
Paul Bauer
Add information regarding xlc compiler
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2017-12-07
Erik Lindahl
Added cool quote from Viveca's defense
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2017-12-07
Roland Schulz
Fix AWH test accuracy
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2017-12-07
Berk Hess
Choose faster nbnxn SIMD kernels on AMD Zen
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2017-12-07
Roland Schulz
Fix exp test for ICC in double
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2017-12-07
Roland Schulz
Fix RelWithAssert with ICC
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2017-12-07
Roland Schulz
Fix C++11 library check's thread dependency
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2017-12-07
Aleksei Iupinov
Relaxed precision in spline interpolation tests
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2017-12-06
Roland Schulz
Fix ICC warnings
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2017-12-06
Aleksei Iupinov
Provide dummy initialization to silence a warning
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2017-12-06
Roland Schulz
Added doxygen note to clarify rounding mode of SIMD
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2017-12-06
Szilárd Páll
Implement alternating GPU wait
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2017-12-05
Alexey Shvetsov
Fix build with cmake 3.10 on Linux
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2017-12-05
Aleksei Iupinov
Do not accept unsupported combination "-pme cpu -pmefft...
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2017-12-05
Mark Abraham
Fix mdrun -nb auto -pme auto when GPUs are absent
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2017-12-05
Roland Schulz
Fix ArrayRef<SimdDInt32> for SSE/AVX128
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2017-12-05
Mark Abraham
Update testing to include cmake 3.10.0
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2017-12-05
Magnus Lundborg
SIMD accelerated Urey-Bradley
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2017-12-05
Berk Hess
Fix DD exact continuation bug
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2017-12-04
Berk Hess
Fix pme gather in double with AVX(2)_128
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2017-12-04
Aleksei Iupinov
Reformulate PME solving tests tolerances
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2017-12-04
Berk Hess
Merge "Merge branch release-2016 into release-2018...
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2017-12-04
Mark Abraham
Fix free_gpu
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2017-12-04
Berk Hess
Fixed initial temperature reporting
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2017-12-04
Mark Abraham
Fix unused variables in CPU pruning kernels
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2017-12-04
Mark Abraham
Merge branch release-2016 into release-2018
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2017-12-04
Berk Hess
Update mdrun signal help text
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2017-12-04
Berk Hess
Only stop at nstlist steps with -reprod
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2017-12-04
Erik Lindahl
Fix compilation issues for AVX-512
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2017-12-03
Berk Hess
Clear vsite velocities for simple integrators
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2017-12-03
Mark Abraham
Fix fft5d pinning
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2017-12-03
Berk Hess
Tighten B-spline moduli single precision test tolerance...
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2017-12-02
Berk Hess
Avoid assertion failure in AWH
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2017-11-30
Viveca Lindahl
Correct AWH input file name in documentation
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2017-11-29
Berk Hess
Change the GPU SMT cut-off to quadratic
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2017-11-28
Erik Lindahl
Fix AVX-512 SIMD test for C
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2017-11-28
Mark Abraham
GROMACS 2018 first beta release
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2017-11-28
Berk Hess
Update documention of Nose-Hoover output
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